3SJRA

Crystal structure of conserved unkown function protein cv_1783 from chromobacterium violaceum atcc 12472
Total Genus 44
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
126
structure length
126
Chain Sequence
ISLSQGAQAAALLFSAAMDQISRLAELDIEPVRLPESELTGDSHSQHLLLGMEILMELYRQQHPDWTAPAIRQAFAPLARAGLERGYQEACQVLRQLNVYTPAVAGQLQGLLLLTQRLFEERLQIA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Structural genomics, unknown function
source organism Chromobacterium violaceum
publication title Crystal structure of conserved unkown function protein CV_1783 from Chromobacterium violaceum ATCC 12472
rcsb
molecule keywords Uncharacterized protein
total genus 44
structure length 126
sequence length 126
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2011-06-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18433 DUF5610 Domain of unknown function (DUF5610)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.90 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 3sjrA00
3SJRA
chains in the Genus database with same CATH superfamily
3P9AA 1T8IA 4L8IA 2E2HA 4EJ3A 4KAWX 1TWHA 3GTOA 1SFOA 1TWGA 4OYDB 4D3ZA 1TL8A 1WQFA 3K5OA 3SJRA 1K4SA 3DU5A 1TGOA 1MIUA 3K5NA 1WQHA 1TWFA 3MAQA 4NOMA 1I50A 3GTLA 5JSBB 1WCMA 4Q5VA 2WAQA 4NOLA 1GE9A 2YU9A 3LF9A 2O5JD 1K83A 4H3TA 2BE5D 1YNND 1A35A 2E2IA 2R4GA 1WQGA 1A31A 2A6ED 2B63A 3KYLA 3K5MA 4FGUA 1V9MA 2CW0D 3K58A 2R92A 4KDDA 4FXDA 1EK8A 4C2MA 4AN8A 3GTQA 1IS1A 1K4TA 2A69D 1ZYRD 4AYBA 3K59A 3IAYA 3FKIA 1YNJD 1Y1WA 1EH1A 4FYDA 4IP8A 4LMOA 1DD5A 2A68D 3LHPS 4KB4A 4QIWA 2JA5A 2PMZA 2F4QA 5CQGA 4KC6A 1A36A 4QCLA 2A6HD 1TWAA 1I3QA 4KB2A 4D3YA 4IP9A 3H0GA 3GTPA 4NOKA 1SMYD 2WB1A 2VUMA 3DU6A 3HKZA 3WVOA 1ISEA 1SC7A 1LPQA 1RRJA 4Q5GA 2NVXA 2JA7A 3K57A 1SEUA 2B9SB 1TWCA 1Y1VA 4AHCA 2NVYA 3M4AA 3K5LA 1HQMD 1R9TA 4F3EA 1R5ZA 5JSNB 1EJ9A 3CQZA 4JLRC 1R49A 3GTKA 4O26A 1Y698 1NH3A 2JA6A 5MLC9 1I6VD 1Q8IA 3GTGA 3GTJA 2R93A 1RR8C 2Y0SA 4GFQA 3GTMA 2R7ZA 1IW7D 5C9HA
chains in the Genus database with same CATH topology
3P9AA 1T8IA 4L8IA 2E2HA 4EJ3A 4KAWX 1TWHA 3GTOA 1SFOA 1TWGA 4OYDB 4D3ZA 1TL8A 1WQFA 3K5OA 3SJRA 1K4SA 3DU5A 1TGOA 1MIUA 3K5NA 1WQHA 1TWFA 3MAQA 4NOMA 1I50A 3GTLA 5JSBB 1WCMA 4Q5VA 2WAQA 4NOLA 1GE9A 2YU9A 3LF9A 2O5JD 1K83A 4H3TA 2BE5D 1YNND 1A35A 2E2IA 2R4GA 1WQGA 1A31A 2A6ED 2B63A 3KYLA 3K5MA 4FGUA 1V9MA 2CW0D 3K58A 2R92A 4KDDA 4FXDA 1EK8A 4C2MA 4AN8A 3GTQA 1IS1A 1K4TA 2A69D 1ZYRD 4AYBA 3K59A 3IAYA 3FKIA 1YNJD 1Y1WA 1EH1A 4FYDA 4IP8A 4LMOA 1DD5A 2A68D 3LHPS 4KB4A 4QIWA 2JA5A 2PMZA 2F4QA 5CQGA 4KC6A 1A36A 4QCLA 2A6HD 1TWAA 1I3QA 4KB2A 4D3YA 4IP9A 3H0GA 3GTPA 4NOKA 1SMYD 2WB1A 2VUMA 3DU6A 3HKZA 3WVOA 1ISEA 1SC7A 1LPQA 1RRJA 4Q5GA 2NVXA 2JA7A 3K57A 1SEUA 2B9SB 1TWCA 1Y1VA 4AHCA 2NVYA 3M4AA 3K5LA 1HQMD 1R9TA 4F3EA 1R5ZA 5JSNB 1EJ9A 3CQZA 4JLRC 1R49A 3GTKA 4O26A 1Y698 1NH3A 2JA6A 5MLC9 1I6VD 1Q8IA 3GTGA 3GTJA 2R93A 1RR8C 2Y0SA 4GFQA 3GTMA 2R7ZA 1IW7D 5C9HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SJR A; 
#chains in the Genus database with same CATH topology
 3P9A A;  1T8I A;  4L8I A;  2E2H A;  4EJ3 A;  4KAW X;  1TWH A;  3GTO A;  1SFO A;  1TWG A;  4OYD B;  4D3Z A;  1TL8 A;  1WQF A;  3K5O A;  3SJR A;  1K4S A;  3DU5 A;  1TGO A;  1MIU A;  3K5N A;  1WQH A;  1TWF A;  3MAQ A;  4NOM A;  1I50 A;  3GTL A;  5JSB B;  1WCM A;  4Q5V A;  2WAQ A;  4NOL A;  1GE9 A;  2YU9 A;  3LF9 A;  2O5J D;  1K83 A;  4H3T A;  2BE5 D;  1YNN D;  1A35 A;  2E2I A;  2R4G A;  1WQG A;  1A31 A;  2A6E D;  2B63 A;  3KYL A;  3K5M A;  4FGU A;  1V9M A;  2CW0 D;  3K58 A;  2R92 A;  4KDD A;  4FXD A;  1EK8 A;  4C2M A;  4AN8 A;  3GTQ A;  1IS1 A;  1K4T A;  2A69 D;  1ZYR D;  4AYB A;  3K59 A;  3IAY A;  3FKI A;  1YNJ D;  1Y1W A;  1EH1 A;  4FYD A;  4IP8 A;  4LMO A;  1DD5 A;  2A68 D;  3LHP S;  4KB4 A;  4QIW A;  2JA5 A;  2PMZ A;  2F4Q A;  5CQG A;  4KC6 A;  1A36 A;  4QCL A;  2A6H D;  1TWA A;  1I3Q A;  4KB2 A;  4D3Y A;  4IP9 A;  3H0G A;  3GTP A;  4NOK A;  1SMY D;  2WB1 A;  2VUM A;  3DU6 A;  3HKZ A;  3WVO A;  1ISE A;  1SC7 A;  1LPQ A;  1RRJ A;  4Q5G A;  2NVX A;  2JA7 A;  3K57 A;  1SEU A;  2B9S B;  1TWC A;  1Y1V A;  4AHC A;  2NVY A;  3M4A A;  3K5L A;  1HQM D;  1R9T A;  4F3E A;  1R5Z A;  5JSN B;  1EJ9 A;  3CQZ A;  4JLR C;  1R49 A;  3GTK A;  4O26 A;  1Y69 8;  1NH3 A;  2JA6 A;  5MLC 9;  1I6V D;  1Q8I A;  3GTG A;  3GTJ A;  2R93 A;  1RR8 C;  2Y0S A;  4GFQ A;  3GTM A;  2R7Z A;  1IW7 D;  5C9H A; 
#chains in the Genus database with same CATH homology
 3P9A A;  1T8I A;  4L8I A;  2E2H A;  4EJ3 A;  4KAW X;  1TWH A;  3GTO A;  1SFO A;  1TWG A;  4OYD B;  4D3Z A;  1TL8 A;  1WQF A;  3K5O A;  3SJR A;  1K4S A;  3DU5 A;  1TGO A;  1MIU A;  3K5N A;  1WQH A;  1TWF A;  3MAQ A;  4NOM A;  1I50 A;  3GTL A;  5JSB B;  1WCM A;  4Q5V A;  2WAQ A;  4NOL A;  1GE9 A;  2YU9 A;  3LF9 A;  2O5J D;  1K83 A;  4H3T A;  2BE5 D;  1YNN D;  1A35 A;  2E2I A;  2R4G A;  1WQG A;  1A31 A;  2A6E D;  2B63 A;  3KYL A;  3K5M A;  4FGU A;  1V9M A;  2CW0 D;  3K58 A;  2R92 A;  4KDD A;  4FXD A;  1EK8 A;  4C2M A;  4AN8 A;  3GTQ A;  1IS1 A;  1K4T A;  2A69 D;  1ZYR D;  4AYB A;  3K59 A;  3IAY A;  3FKI A;  1YNJ D;  1Y1W A;  1EH1 A;  4FYD A;  4IP8 A;  4LMO A;  1DD5 A;  2A68 D;  3LHP S;  4KB4 A;  4QIW A;  2JA5 A;  2PMZ A;  2F4Q A;  5CQG A;  4KC6 A;  1A36 A;  4QCL A;  2A6H D;  1TWA A;  1I3Q A;  4KB2 A;  4D3Y A;  4IP9 A;  3H0G A;  3GTP A;  4NOK A;  1SMY D;  2WB1 A;  2VUM A;  3DU6 A;  3HKZ A;  3WVO A;  1ISE A;  1SC7 A;  1LPQ A;  1RRJ A;  4Q5G A;  2NVX A;  2JA7 A;  3K57 A;  1SEU A;  2B9S B;  1TWC A;  1Y1V A;  4AHC A;  2NVY A;  3M4A A;  3K5L A;  1HQM D;  1R9T A;  4F3E A;  1R5Z A;  5JSN B;  1EJ9 A;  3CQZ A;  4JLR C;  1R49 A;  3GTK A;  4O26 A;  1Y69 8;  1NH3 A;  2JA6 A;  5MLC 9;  1I6V D;  1Q8I A;  3GTG A;  3GTJ A;  2R93 A;  1RR8 C;  2Y0S A;  4GFQ A;  3GTM A;  2R7Z A;  1IW7 D;  5C9H A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...