4JLRC

Crystal structure of a designed respiratory syncytial virus immunogen in complex with motavizumab
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
103
structure length
100
Chain Sequence
KDAERRFDKFVEAAKNKFDKFKAALDIKEERRKDMKKLARKEAEQARRAVRNRLSELLSKINDMPITNDQKKLMSNDVLKFAAEAEKKIEALAADAEDKF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
source organism Homo sapiens
publication title Proof of principle for epitope-focused vaccine design.
pubmed doi rcsb
molecule keywords Motavizumab Fab heavy chain
total genus 29
structure length 100
sequence length 103
chains with identical sequence S
ec nomenclature
pdb deposition date 2013-03-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.20 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 4jlrC00
4JLRC 4KDDA 4OYDB 4KB2A 1WQGA 3LF9A 1IS1A 4GFQA 5MLC9 4KAWX 1GE9A 4KB4A 1EH1A 1WQFA 1EK8A 1Y698 1ISEA 3LHPS 5JSBB 1WQHA 1DD5A 4L8IA 4KC6A 5JSNB
chains in the Genus database with same CATH superfamily
4JLRC 3GTJA 2BE5D 3KYLA 4Q5VA 1WQGA 3K58A 2A68D 3LF9A 1WCMA 4GFQA 4KAWX 1GE9A 3GTMA 4EJ3A 4NOMA 2A69D 4IP9A 4IP8A 3H0GA 4NOLA 5C9HA 1A36A 1ISEA 3K57A 1A35A 1SEUA 3K5NA 1SFOA 4FYDA 4QCLA 1TWHA 2R93A 1V9MA 2B63A 1K83A 1TGOA 4KDDA 1I50A 4OYDB 1LPQA 3SJRA 5MLC9 1Q8IA 3K5LA 1TWFA 1YNJD 1EH1A 1WQFA 1YNND 1EK8A 3K59A 1Y698 1SMYD 1IW7D 3DU6A 3LHPS 5JSBB 1MIUA 2A6HD 3K5MA 4L8IA 1I3QA 1RRJA 4H3TA 5JSNB 2A6ED 1RR8C 1K4TA 2JA6A 3WVOA 3IAYA 1TWAA 1A31A 1T8IA 1IS1A 4LMOA 2WB1A 2R92A 2NVYA 2CW0D 4O26A 1R9TA 2JA7A 2WAQA 4FGUA 4D3YA 3DU5A 1SC7A 1Y1WA 4NOKA 1TWGA 2VUMA 1EJ9A 1WQHA 4D3ZA 1DD5A 2O5JD 3P9AA 2R4GA 3GTQA 2JA5A 2YU9A 3MAQA 2B9SB 3GTOA 4AN8A 4KB2A 3M4AA 2R7ZA 2NVXA 3K5OA 1HQMD 1TWCA 4QIWA 4KB4A 1ZYRD 3GTPA 3HKZA 3CQZA 1NH3A 4Q5GA 1I6VD 3FKIA 1R5ZA 2F4QA 4FXDA 2PMZA 2E2IA 3GTLA 1R49A 3GTGA 2E2HA 4F3EA 4C2MA 4KC6A 1Y1VA 4AHCA 4AYBA 3GTKA 1K4SA 2Y0SA 5CQGA 1TL8A
chains in the Genus database with same CATH topology
4JLRC 3GTJA 2BE5D 3KYLA 4Q5VA 1WQGA 3K58A 2A68D 3LF9A 1WCMA 4GFQA 4KAWX 1GE9A 3GTMA 4EJ3A 4NOMA 2A69D 4IP9A 4IP8A 3H0GA 4NOLA 5C9HA 1A36A 1ISEA 3K57A 1A35A 1SEUA 3K5NA 1SFOA 4FYDA 4QCLA 1TWHA 2R93A 1V9MA 2B63A 1K83A 1TGOA 4KDDA 1I50A 4OYDB 1LPQA 3SJRA 5MLC9 1Q8IA 3K5LA 1TWFA 1YNJD 1EH1A 1WQFA 1YNND 1EK8A 3K59A 1Y698 1SMYD 1IW7D 3DU6A 3LHPS 5JSBB 1MIUA 2A6HD 3K5MA 4L8IA 1I3QA 1RRJA 4H3TA 5JSNB 2A6ED 1RR8C 1K4TA 2JA6A 3WVOA 3IAYA 1TWAA 1A31A 1T8IA 1IS1A 4LMOA 2WB1A 2R92A 2NVYA 2CW0D 4O26A 1R9TA 2JA7A 2WAQA 4FGUA 4D3YA 3DU5A 1SC7A 1Y1WA 4NOKA 1TWGA 2VUMA 1EJ9A 1WQHA 4D3ZA 1DD5A 2O5JD 3P9AA 2R4GA 3GTQA 2JA5A 2YU9A 3MAQA 2B9SB 3GTOA 4AN8A 4KB2A 3M4AA 2R7ZA 2NVXA 3K5OA 1HQMD 1TWCA 4QIWA 4KB4A 1ZYRD 3GTPA 3HKZA 3CQZA 1NH3A 4Q5GA 1I6VD 3FKIA 1R5ZA 2F4QA 4FXDA 2PMZA 2E2IA 3GTLA 1R49A 3GTGA 2E2HA 4F3EA 4C2MA 4KC6A 1Y1VA 4AHCA 4AYBA 3GTKA 1K4SA 2Y0SA 5CQGA 1TL8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JLR C;  4KDD A;  4OYD B;  4KB2 A;  1WQG A;  3LF9 A;  1IS1 A;  4GFQ A;  5MLC 9;  4KAW X;  1GE9 A;  4KB4 A;  1EH1 A;  1WQF A;  1EK8 A;  1Y69 8;  1ISE A;  3LHP S;  5JSB B;  1WQH A;  1DD5 A;  4L8I A;  4KC6 A;  5JSN B; 
#chains in the Genus database with same CATH topology
 4JLR C;  3GTJ A;  2BE5 D;  3KYL A;  4Q5V A;  1WQG A;  3K58 A;  2A68 D;  3LF9 A;  1WCM A;  4GFQ A;  4KAW X;  1GE9 A;  3GTM A;  4EJ3 A;  4NOM A;  2A69 D;  4IP9 A;  4IP8 A;  3H0G A;  4NOL A;  5C9H A;  1A36 A;  1ISE A;  3K57 A;  1A35 A;  1SEU A;  3K5N A;  1SFO A;  4FYD A;  4QCL A;  1TWH A;  2R93 A;  1V9M A;  2B63 A;  1K83 A;  1TGO A;  4KDD A;  1I50 A;  4OYD B;  1LPQ A;  3SJR A;  5MLC 9;  1Q8I A;  3K5L A;  1TWF A;  1YNJ D;  1EH1 A;  1WQF A;  1YNN D;  1EK8 A;  3K59 A;  1Y69 8;  1SMY D;  1IW7 D;  3DU6 A;  3LHP S;  5JSB B;  1MIU A;  2A6H D;  3K5M A;  4L8I A;  1I3Q A;  1RRJ A;  4H3T A;  5JSN B;  2A6E D;  1RR8 C;  1K4T A;  2JA6 A;  3WVO A;  3IAY A;  1TWA A;  1A31 A;  1T8I A;  1IS1 A;  4LMO A;  2WB1 A;  2R92 A;  2NVY A;  2CW0 D;  4O26 A;  1R9T A;  2JA7 A;  2WAQ A;  4FGU A;  4D3Y A;  3DU5 A;  1SC7 A;  1Y1W A;  4NOK A;  1TWG A;  2VUM A;  1EJ9 A;  1WQH A;  4D3Z A;  1DD5 A;  2O5J D;  3P9A A;  2R4G A;  3GTQ A;  2JA5 A;  2YU9 A;  3MAQ A;  2B9S B;  3GTO A;  4AN8 A;  4KB2 A;  3M4A A;  2R7Z A;  2NVX A;  3K5O A;  1HQM D;  1TWC A;  4QIW A;  4KB4 A;  1ZYR D;  3GTP A;  3HKZ A;  3CQZ A;  1NH3 A;  4Q5G A;  1I6V D;  3FKI A;  1R5Z A;  2F4Q A;  4FXD A;  2PMZ A;  2E2I A;  3GTL A;  1R49 A;  3GTG A;  2E2H A;  4F3E A;  4C2M A;  4KC6 A;  1Y1V A;  4AHC A;  4AYB A;  3GTK A;  1K4S A;  2Y0S A;  5CQG A;  1TL8 A; 
#chains in the Genus database with same CATH homology
 4JLR C;  3GTJ A;  2BE5 D;  3KYL A;  4Q5V A;  1WQG A;  3K58 A;  2A68 D;  3LF9 A;  1WCM A;  4GFQ A;  4KAW X;  1GE9 A;  3GTM A;  4EJ3 A;  4NOM A;  2A69 D;  4IP9 A;  4IP8 A;  3H0G A;  4NOL A;  5C9H A;  1A36 A;  1ISE A;  3K57 A;  1A35 A;  1SEU A;  3K5N A;  1SFO A;  4FYD A;  4QCL A;  1TWH A;  2R93 A;  1V9M A;  2B63 A;  1K83 A;  1TGO A;  4KDD A;  1I50 A;  4OYD B;  1LPQ A;  3SJR A;  5MLC 9;  1Q8I A;  3K5L A;  1TWF A;  1YNJ D;  1EH1 A;  1WQF A;  1YNN D;  1EK8 A;  3K59 A;  1Y69 8;  1SMY D;  1IW7 D;  3DU6 A;  3LHP S;  5JSB B;  1MIU A;  2A6H D;  3K5M A;  4L8I A;  1I3Q A;  1RRJ A;  4H3T A;  5JSN B;  2A6E D;  1RR8 C;  1K4T A;  2JA6 A;  3WVO A;  3IAY A;  1TWA A;  1A31 A;  1T8I A;  1IS1 A;  4LMO A;  2WB1 A;  2R92 A;  2NVY A;  2CW0 D;  4O26 A;  1R9T A;  2JA7 A;  2WAQ A;  4FGU A;  4D3Y A;  3DU5 A;  1SC7 A;  1Y1W A;  4NOK A;  1TWG A;  2VUM A;  1EJ9 A;  1WQH A;  4D3Z A;  1DD5 A;  2O5J D;  3P9A A;  2R4G A;  3GTQ A;  2JA5 A;  2YU9 A;  3MAQ A;  2B9S B;  3GTO A;  4AN8 A;  4KB2 A;  3M4A A;  2R7Z A;  2NVX A;  3K5O A;  1HQM D;  1TWC A;  4QIW A;  4KB4 A;  1ZYR D;  3GTP A;  3HKZ A;  3CQZ A;  1NH3 A;  4Q5G A;  1I6V D;  3FKI A;  1R5Z A;  2F4Q A;  4FXD A;  2PMZ A;  2E2I A;  3GTL A;  1R49 A;  3GTG A;  2E2H A;  4F3E A;  4C2M A;  4KC6 A;  1Y1V A;  4AHC A;  4AYB A;  3GTK A;  1K4S A;  2Y0S A;  5CQG A;  1TL8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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