3WVOA

Crystal structure of thermobifida fusca cse1
Total Genus 168
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
168
sequence length
547
structure length
543
Chain Sequence
MTTDAPSFNLITQPWLPVQYRDGTEKELSLLEVFKQAPLLRRLVGDVPTQEFALLRLLLAILHDAIGGPEDSDEWAELWTQDEAEQQLPFDCIASYLEQYYHRFDLLHPTTPFFQVADLHTQKNDVFSLDRIVADVPNGELFFTMRARGVDRLSFAEAARWLVHAHAYDTSGIKSGAVGDPRAKGGKGYPQGVSWAGNLGGILVEGANLYETLLLNLVAFDTDNLIVTPEDRPAWRQPPTTAAPADDEELAQRPYGLCDLYTWQSRRIRLHYDADGVYGVLLAYGDPLAPHNKHNHEPMTAWRRSPAQEKKLKKPQVYLPREHDPTRSAWRGLGALVAGEASGAEQRGEAAAIVRPRILDWVARLVNEGFLPEDYFIRTRLIGVSYGTQQAVIDEIVDDHVAMAVVLLHERDSGLGRTAIKAVEDAEKAVTVLGGLAADLAKAAGADPETPRAAARDRGFGMLDGPFRTWLATLAPGTDATERRRAWQQKAHRIISDLGRQLVAEAGEAAWNKGKNTDVWLNASRADLKFRAELKKELPMATS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell invasion
molecule keywords CRISPR-associated protein, Cse1 family
publication title Crystal structure of Thermobifida fusca Cse1 reveals target DNA binding site
pubmed doi rcsb
source organism Thermobifida fusca
total genus 168
structure length 543
sequence length 547
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2014-06-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09481 CRISPR_Cse1 CRISPR-associated protein Cse1 (CRISPR_cse1)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.100 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 3wvoA02
3WVOA 4H3TA 4EJ3A 4F3EA 4AN8A
chains in the Genus database with same CATH superfamily
2A6ED 2R93A 1EJ9A 4C2MA 4Q5VA 1TWGA 4GFQA 1HQMD 4FXDA 1GE9A 5CQGA 2JA7A 1I6VD 3DU6A 1TWAA 4NOKA 1I3QA 2R92A 1TL8A 2PMZA 1R49A 2E2IA 4F3EA 1Y698 1YNJD 2A69D 3WVOA 4NOMA 3M4AA 1SEUA 2JA5A 5MLC9 4EJ3A 5JSBB 3K57A 4NOLA 4KB2A 4D3ZA 3KYLA 3MAQA 1R9TA 4IP9A 4KB4A 4AHCA 1K83A 1TGOA 1R5ZA 1Y1WA 1RR8C 3P9AA 2O5JD 2R7ZA 1SMYD 2Y0SA 1EK8A 1LPQA 3GTKA 1MIUA 1WQFA 3CQZA 3K5MA 3GTJA 1WCMA 2NVXA 2NVYA 2WB1A 4L8IA 1TWHA 1TWCA 2A68D 4IP8A 4JLRC 2B9SB 3K59A 4FYDA 1TWFA 4KC6A 3K5LA 4D3YA 1IS1A 1I50A 2CW0D 1DD5A 4LMOA 2VUMA 5C9HA 3GTPA 1YNND 1SC7A 3HKZA 3GTLA 3GTOA 2BE5D 1A36A 2F4QA 4AYBA 1ZYRD 1RRJA 1K4SA 3GTQA 1WQGA 3H0GA 4OYDB 2B63A 4QIWA 3LHPS 4AN8A 3K5NA 3SJRA 1IW7D 3K58A 1ISEA 3DU5A 3GTGA 4KDDA 1NH3A 4H3TA 3LF9A 1V9MA 2WAQA 4Q5GA 2A6HD 3IAYA 1WQHA 3FKIA 1T8IA 3K5OA 2YU9A 4O26A 3GTMA 4QCLA 5JSNB 4KAWX 1SFOA 2E2HA 1Q8IA 1K4TA 2JA6A 1Y1VA 1A31A 2R4GA 1EH1A 1A35A 4FGUA
chains in the Genus database with same CATH topology
2A6ED 2R93A 1EJ9A 4C2MA 4Q5VA 1TWGA 4GFQA 1HQMD 4FXDA 1GE9A 5CQGA 2JA7A 1I6VD 3DU6A 1TWAA 4NOKA 1I3QA 2R92A 1TL8A 2PMZA 1R49A 2E2IA 4F3EA 1Y698 1YNJD 2A69D 3WVOA 4NOMA 3M4AA 1SEUA 2JA5A 5MLC9 4EJ3A 5JSBB 3K57A 4NOLA 4KB2A 4D3ZA 3KYLA 3MAQA 1R9TA 4IP9A 4KB4A 4AHCA 1K83A 1TGOA 1R5ZA 1Y1WA 1RR8C 3P9AA 2O5JD 2R7ZA 1SMYD 2Y0SA 1EK8A 1LPQA 3GTKA 1MIUA 1WQFA 3CQZA 3K5MA 3GTJA 1WCMA 2NVXA 2NVYA 2WB1A 4L8IA 1TWHA 1TWCA 2A68D 4IP8A 4JLRC 2B9SB 3K59A 4FYDA 1TWFA 4KC6A 3K5LA 4D3YA 1IS1A 1I50A 2CW0D 1DD5A 4LMOA 2VUMA 5C9HA 3GTPA 1YNND 1SC7A 3HKZA 3GTLA 3GTOA 2BE5D 1A36A 2F4QA 4AYBA 1ZYRD 1RRJA 1K4SA 3GTQA 1WQGA 3H0GA 4OYDB 2B63A 4QIWA 3LHPS 4AN8A 3K5NA 3SJRA 1IW7D 3K58A 1ISEA 3DU5A 3GTGA 4KDDA 1NH3A 4H3TA 3LF9A 1V9MA 2WAQA 4Q5GA 2A6HD 3IAYA 1WQHA 3FKIA 1T8IA 3K5OA 2YU9A 4O26A 3GTMA 4QCLA 5JSNB 4KAWX 1SFOA 2E2HA 1Q8IA 1K4TA 2JA6A 1Y1VA 1A31A 2R4GA 1EH1A 1A35A 4FGUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WVO A;  4H3T A;  4EJ3 A;  4F3E A;  4AN8 A; 
#chains in the Genus database with same CATH topology
 2A6E D;  2R93 A;  1EJ9 A;  4C2M A;  4Q5V A;  1TWG A;  4GFQ A;  1HQM D;  4FXD A;  1GE9 A;  5CQG A;  2JA7 A;  1I6V D;  3DU6 A;  1TWA A;  4NOK A;  1I3Q A;  2R92 A;  1TL8 A;  2PMZ A;  1R49 A;  2E2I A;  4F3E A;  1Y69 8;  1YNJ D;  2A69 D;  3WVO A;  4NOM A;  3M4A A;  1SEU A;  2JA5 A;  5MLC 9;  4EJ3 A;  5JSB B;  3K57 A;  4NOL A;  4KB2 A;  4D3Z A;  3KYL A;  3MAQ A;  1R9T A;  4IP9 A;  4KB4 A;  4AHC A;  1K83 A;  1TGO A;  1R5Z A;  1Y1W A;  1RR8 C;  3P9A A;  2O5J D;  2R7Z A;  1SMY D;  2Y0S A;  1EK8 A;  1LPQ A;  3GTK A;  1MIU A;  1WQF A;  3CQZ A;  3K5M A;  3GTJ A;  1WCM A;  2NVX A;  2NVY A;  2WB1 A;  4L8I A;  1TWH A;  1TWC A;  2A68 D;  4IP8 A;  4JLR C;  2B9S B;  3K59 A;  4FYD A;  1TWF A;  4KC6 A;  3K5L A;  4D3Y A;  1IS1 A;  1I50 A;  2CW0 D;  1DD5 A;  4LMO A;  2VUM A;  5C9H A;  3GTP A;  1YNN D;  1SC7 A;  3HKZ A;  3GTL A;  3GTO A;  2BE5 D;  1A36 A;  2F4Q A;  4AYB A;  1ZYR D;  1RRJ A;  1K4S A;  3GTQ A;  1WQG A;  3H0G A;  4OYD B;  2B63 A;  4QIW A;  3LHP S;  4AN8 A;  3K5N A;  3SJR A;  1IW7 D;  3K58 A;  1ISE A;  3DU5 A;  3GTG A;  4KDD A;  1NH3 A;  4H3T A;  3LF9 A;  1V9M A;  2WAQ A;  4Q5G A;  2A6H D;  3IAY A;  1WQH A;  3FKI A;  1T8I A;  3K5O A;  2YU9 A;  4O26 A;  3GTM A;  4QCL A;  5JSN B;  4KAW X;  1SFO A;  2E2H A;  1Q8I A;  1K4T A;  2JA6 A;  1Y1V A;  1A31 A;  2R4G A;  1EH1 A;  1A35 A;  4FGU A; 
#chains in the Genus database with same CATH homology
 2A6E D;  2R93 A;  1EJ9 A;  4C2M A;  4Q5V A;  1TWG A;  4GFQ A;  1HQM D;  4FXD A;  1GE9 A;  5CQG A;  2JA7 A;  1I6V D;  3DU6 A;  1TWA A;  4NOK A;  1I3Q A;  2R92 A;  1TL8 A;  2PMZ A;  1R49 A;  2E2I A;  4F3E A;  1Y69 8;  1YNJ D;  2A69 D;  3WVO A;  4NOM A;  3M4A A;  1SEU A;  2JA5 A;  5MLC 9;  4EJ3 A;  5JSB B;  3K57 A;  4NOL A;  4KB2 A;  4D3Z A;  3KYL A;  3MAQ A;  1R9T A;  4IP9 A;  4KB4 A;  4AHC A;  1K83 A;  1TGO A;  1R5Z A;  1Y1W A;  1RR8 C;  3P9A A;  2O5J D;  2R7Z A;  1SMY D;  2Y0S A;  1EK8 A;  1LPQ A;  3GTK A;  1MIU A;  1WQF A;  3CQZ A;  3K5M A;  3GTJ A;  1WCM A;  2NVX A;  2NVY A;  2WB1 A;  4L8I A;  1TWH A;  1TWC A;  2A68 D;  4IP8 A;  4JLR C;  2B9S B;  3K59 A;  4FYD A;  1TWF A;  4KC6 A;  3K5L A;  4D3Y A;  1IS1 A;  1I50 A;  2CW0 D;  1DD5 A;  4LMO A;  2VUM A;  5C9H A;  3GTP A;  1YNN D;  1SC7 A;  3HKZ A;  3GTL A;  3GTO A;  2BE5 D;  1A36 A;  2F4Q A;  4AYB A;  1ZYR D;  1RRJ A;  1K4S A;  3GTQ A;  1WQG A;  3H0G A;  4OYD B;  2B63 A;  4QIW A;  3LHP S;  4AN8 A;  3K5N A;  3SJR A;  1IW7 D;  3K58 A;  1ISE A;  3DU5 A;  3GTG A;  4KDD A;  1NH3 A;  4H3T A;  3LF9 A;  1V9M A;  2WAQ A;  4Q5G A;  2A6H D;  3IAY A;  1WQH A;  3FKI A;  1T8I A;  3K5O A;  2YU9 A;  4O26 A;  3GTM A;  4QCL A;  5JSN B;  4KAW X;  1SFO A;  2E2H A;  1Q8I A;  1K4T A;  2JA6 A;  1Y1V A;  1A31 A;  2R4G A;  1EH1 A;  1A35 A;  4FGU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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