3WVOA

Crystal structure of thermobifida fusca cse1
Total Genus 168
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
168
sequence length
547
structure length
543
Chain Sequence
MTTDAPSFNLITQPWLPVQYRDGTEKELSLLEVFKQAPLLRRLVGDVPTQEFALLRLLLAILHDAIGGPEDSDEWAELWTQDEAEQQLPFDCIASYLEQYYHRFDLLHPTTPFFQVADLHTQKNDVFSLDRIVADVPNGELFFTMRARGVDRLSFAEAARWLVHAHAYDTSGIKSGAVGDPRAKGGKGYPQGVSWAGNLGGILVEGANLYETLLLNLVAFDTDNLIVTPEDRPAWRQPPTTAAPADDEELAQRPYGLCDLYTWQSRRIRLHYDADGVYGVLLAYGDPLAPHNKHNHEPMTAWRRSPAQEKKLKKPQVYLPREHDPTRSAWRGLGALVAGEASGAEQRGEAAAIVRPRILDWVARLVNEGFLPEDYFIRTRLIGVSYGTQQAVIDEIVDDHVAMAVVLLHERDSGLGRTAIKAVEDAEKAVTVLGGLAADLAKAAGADPETPRAAARDRGFGMLDGPFRTWLATLAPGTDATERRRAWQQKAHRIISDLGRQLVAEAGEAAWNKGKNTDVWLNASRADLKFRAELKKELPMATS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell invasion
molecule keywords CRISPR-associated protein, Cse1 family
publication title Crystal structure of Thermobifida fusca Cse1 reveals target DNA binding site
pubmed doi rcsb
source organism Thermobifida fusca
total genus 168
structure length 543
sequence length 547
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2014-06-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09481 CRISPR_Cse1 CRISPR-associated protein Cse1 (CRISPR_cse1)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.100 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 3wvoA02
4H3TA 4F3EA 4AN8A 4EJ3A 3WVOA
chains in the Genus database with same CATH superfamily
1SEUA 1WQFA 4KC6A 2JA5A 3M4AA 1I3QA 2B63A 2R92A 1DD5A 1WQGA 1ISEA 2A6HD 1R49A 1A35A 1Y1WA 1TWGA 4D3ZA 3GTMA 5MLC9 5C9HA 4KDDA 4GFQA 2B9SB 1A31A 2PMZA 2YU9A 1TWCA 1LPQA 2E2HA 2WAQA 1I6VD 2A69D 2NVXA 2NVYA 3SJRA 2R93A 1SMYD 3K58A 1R5ZA 2A68D 3LF9A 4NOMA 2VUMA 4AN8A 4Q5GA 4D3YA 1NH3A 1TWAA 4FYDA 1ZYRD 5JSNB 4H3TA 4OYDB 3KYLA 1K4SA 1EH1A 1IW7D 4FXDA 1TWFA 1IS1A 4JLRC 2JA6A 4AHCA 1A36A 1R9TA 1WQHA 2BE5D 4FGUA 3GTPA 3MAQA 1HQMD 4KAWX 4NOKA 5CQGA 4QIWA 3GTKA 3GTQA 2A6ED 1RR8C 2E2IA 3DU6A 4Q5VA 3K5OA 4EJ3A 4L8IA 3WVOA 4QCLA 3FKIA 3K5NA 1EJ9A 1YNJD 3H0GA 1TGOA 2CW0D 2R7ZA 4NOLA 1I50A 1MIUA 1RRJA 4C2MA 1SFOA 1K83A 2Y0SA 3LHPS 1YNND 3K5LA 3HKZA 4AYBA 1SC7A 3GTLA 1Y698 1GE9A 1TL8A 1Q8IA 4O26A 3K57A 2JA7A 3K5MA 4IP8A 4KB2A 1K4TA 1WCMA 5JSBB 3GTJA 3GTOA 1Y1VA 3K59A 1V9MA 2WB1A 3P9AA 3IAYA 1EK8A 1TWHA 3CQZA 3GTGA 4IP9A 2F4QA 4F3EA 4KB4A 2O5JD 1T8IA 2R4GA 3DU5A 4LMOA
chains in the Genus database with same CATH topology
1SEUA 1WQFA 4KC6A 2JA5A 3M4AA 1I3QA 2B63A 2R92A 1DD5A 1WQGA 1ISEA 2A6HD 1R49A 1A35A 1Y1WA 1TWGA 4D3ZA 3GTMA 5MLC9 5C9HA 4KDDA 4GFQA 2B9SB 1A31A 2PMZA 2YU9A 1TWCA 1LPQA 2E2HA 2WAQA 1I6VD 2A69D 2NVXA 2NVYA 3SJRA 2R93A 1SMYD 3K58A 1R5ZA 2A68D 3LF9A 4NOMA 2VUMA 4AN8A 4Q5GA 4D3YA 1NH3A 1TWAA 4FYDA 1ZYRD 5JSNB 4H3TA 4OYDB 3KYLA 1K4SA 1EH1A 1IW7D 4FXDA 1TWFA 1IS1A 4JLRC 2JA6A 4AHCA 1A36A 1R9TA 1WQHA 2BE5D 4FGUA 3GTPA 3MAQA 1HQMD 4KAWX 4NOKA 5CQGA 4QIWA 3GTKA 3GTQA 2A6ED 1RR8C 2E2IA 3DU6A 4Q5VA 3K5OA 4EJ3A 4L8IA 3WVOA 4QCLA 3FKIA 3K5NA 1EJ9A 1YNJD 3H0GA 1TGOA 2CW0D 2R7ZA 4NOLA 1I50A 1MIUA 1RRJA 4C2MA 1SFOA 1K83A 2Y0SA 3LHPS 1YNND 3K5LA 3HKZA 4AYBA 1SC7A 3GTLA 1Y698 1GE9A 1TL8A 1Q8IA 4O26A 3K57A 2JA7A 3K5MA 4IP8A 4KB2A 1K4TA 1WCMA 5JSBB 3GTJA 3GTOA 1Y1VA 3K59A 1V9MA 2WB1A 3P9AA 3IAYA 1EK8A 1TWHA 3CQZA 3GTGA 4IP9A 2F4QA 4F3EA 4KB4A 2O5JD 1T8IA 2R4GA 3DU5A 4LMOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4H3T A;  4F3E A;  4AN8 A;  4EJ3 A;  3WVO A; 
#chains in the Genus database with same CATH topology
 1SEU A;  1WQF A;  4KC6 A;  2JA5 A;  3M4A A;  1I3Q A;  2B63 A;  2R92 A;  1DD5 A;  1WQG A;  1ISE A;  2A6H D;  1R49 A;  1A35 A;  1Y1W A;  1TWG A;  4D3Z A;  3GTM A;  5MLC 9;  5C9H A;  4KDD A;  4GFQ A;  2B9S B;  1A31 A;  2PMZ A;  2YU9 A;  1TWC A;  1LPQ A;  2E2H A;  2WAQ A;  1I6V D;  2A69 D;  2NVX A;  2NVY A;  3SJR A;  2R93 A;  1SMY D;  3K58 A;  1R5Z A;  2A68 D;  3LF9 A;  4NOM A;  2VUM A;  4AN8 A;  4Q5G A;  4D3Y A;  1NH3 A;  1TWA A;  4FYD A;  1ZYR D;  5JSN B;  4H3T A;  4OYD B;  3KYL A;  1K4S A;  1EH1 A;  1IW7 D;  4FXD A;  1TWF A;  1IS1 A;  4JLR C;  2JA6 A;  4AHC A;  1A36 A;  1R9T A;  1WQH A;  2BE5 D;  4FGU A;  3GTP A;  3MAQ A;  1HQM D;  4KAW X;  4NOK A;  5CQG A;  4QIW A;  3GTK A;  3GTQ A;  2A6E D;  1RR8 C;  2E2I A;  3DU6 A;  4Q5V A;  3K5O A;  4EJ3 A;  4L8I A;  3WVO A;  4QCL A;  3FKI A;  3K5N A;  1EJ9 A;  1YNJ D;  3H0G A;  1TGO A;  2CW0 D;  2R7Z A;  4NOL A;  1I50 A;  1MIU A;  1RRJ A;  4C2M A;  1SFO A;  1K83 A;  2Y0S A;  3LHP S;  1YNN D;  3K5L A;  3HKZ A;  4AYB A;  1SC7 A;  3GTL A;  1Y69 8;  1GE9 A;  1TL8 A;  1Q8I A;  4O26 A;  3K57 A;  2JA7 A;  3K5M A;  4IP8 A;  4KB2 A;  1K4T A;  1WCM A;  5JSB B;  3GTJ A;  3GTO A;  1Y1V A;  3K59 A;  1V9M A;  2WB1 A;  3P9A A;  3IAY A;  1EK8 A;  1TWH A;  3CQZ A;  3GTG A;  4IP9 A;  2F4Q A;  4F3E A;  4KB4 A;  2O5J D;  1T8I A;  2R4G A;  3DU5 A;  4LMO A; 
#chains in the Genus database with same CATH homology
 1SEU A;  1WQF A;  4KC6 A;  2JA5 A;  3M4A A;  1I3Q A;  2B63 A;  2R92 A;  1DD5 A;  1WQG A;  1ISE A;  2A6H D;  1R49 A;  1A35 A;  1Y1W A;  1TWG A;  4D3Z A;  3GTM A;  5MLC 9;  5C9H A;  4KDD A;  4GFQ A;  2B9S B;  1A31 A;  2PMZ A;  2YU9 A;  1TWC A;  1LPQ A;  2E2H A;  2WAQ A;  1I6V D;  2A69 D;  2NVX A;  2NVY A;  3SJR A;  2R93 A;  1SMY D;  3K58 A;  1R5Z A;  2A68 D;  3LF9 A;  4NOM A;  2VUM A;  4AN8 A;  4Q5G A;  4D3Y A;  1NH3 A;  1TWA A;  4FYD A;  1ZYR D;  5JSN B;  4H3T A;  4OYD B;  3KYL A;  1K4S A;  1EH1 A;  1IW7 D;  4FXD A;  1TWF A;  1IS1 A;  4JLR C;  2JA6 A;  4AHC A;  1A36 A;  1R9T A;  1WQH A;  2BE5 D;  4FGU A;  3GTP A;  3MAQ A;  1HQM D;  4KAW X;  4NOK A;  5CQG A;  4QIW A;  3GTK A;  3GTQ A;  2A6E D;  1RR8 C;  2E2I A;  3DU6 A;  4Q5V A;  3K5O A;  4EJ3 A;  4L8I A;  3WVO A;  4QCL A;  3FKI A;  3K5N A;  1EJ9 A;  1YNJ D;  3H0G A;  1TGO A;  2CW0 D;  2R7Z A;  4NOL A;  1I50 A;  1MIU A;  1RRJ A;  4C2M A;  1SFO A;  1K83 A;  2Y0S A;  3LHP S;  1YNN D;  3K5L A;  3HKZ A;  4AYB A;  1SC7 A;  3GTL A;  1Y69 8;  1GE9 A;  1TL8 A;  1Q8I A;  4O26 A;  3K57 A;  2JA7 A;  3K5M A;  4IP8 A;  4KB2 A;  1K4T A;  1WCM A;  5JSB B;  3GTJ A;  3GTO A;  1Y1V A;  3K59 A;  1V9M A;  2WB1 A;  3P9A A;  3IAY A;  1EK8 A;  1TWH A;  3CQZ A;  3GTG A;  4IP9 A;  2F4Q A;  4F3E A;  4KB4 A;  2O5J D;  1T8I A;  2R4G A;  3DU5 A;  4LMO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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