3WVOA

Crystal structure of thermobifida fusca cse1
Total Genus 168
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
168
sequence length
547
structure length
543
Chain Sequence
MTTDAPSFNLITQPWLPVQYRDGTEKELSLLEVFKQAPLLRRLVGDVPTQEFALLRLLLAILHDAIGGPEDSDEWAELWTQDEAEQQLPFDCIASYLEQYYHRFDLLHPTTPFFQVADLHTQKNDVFSLDRIVADVPNGELFFTMRARGVDRLSFAEAARWLVHAHAYDTSGIKSGAVGDPRAKGGKGYPQGVSWAGNLGGILVEGANLYETLLLNLVAFDTDNLIVTPEDRPAWRQPPTTAAPADDEELAQRPYGLCDLYTWQSRRIRLHYDADGVYGVLLAYGDPLAPHNKHNHEPMTAWRRSPAQEKKLKKPQVYLPREHDPTRSAWRGLGALVAGEASGAEQRGEAAAIVRPRILDWVARLVNEGFLPEDYFIRTRLIGVSYGTQQAVIDEIVDDHVAMAVVLLHERDSGLGRTAIKAVEDAEKAVTVLGGLAADLAKAAGADPETPRAAARDRGFGMLDGPFRTWLATLAPGTDATERRRAWQQKAHRIISDLGRQLVAEAGEAAWNKGKNTDVWLNASRADLKFRAELKKELPMATS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords CRISPR-associated protein, Cse1 family
publication title Crystal structure of Thermobifida fusca Cse1 reveals target DNA binding site
pubmed doi rcsb
source organism Thermobifida fusca
molecule tags Cell invasion
total genus 168
structure length 543
sequence length 547
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2014-06-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09481 CRISPR_Cse1 CRISPR-associated protein Cse1 (CRISPR_cse1)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.100 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 3wvoA02
3WVOA 4AN8A 4F3EA 4EJ3A 4H3TA
chains in the Genus database with same CATH superfamily
4KB4A 1K83A 3K57A 4AHCA 1I50A 2WB1A 2O5JD 4O26A 4IP8A 4D3ZA 4AYBA 4F3EA 5MLC9 1R5ZA 1DD5A 5JSNB 3FKIA 1K4TA 4GFQA 4NOLA 1IW7D 1V9MA 1SMYD 1TWCA 4AN8A 1EJ9A 2NVXA 2F4QA 2BE5D 2R7ZA 4KB2A 1MIUA 2PMZA 1WQGA 4EJ3A 1TL8A 3MAQA 4JLRC 3KYLA 2E2HA 4Q5GA 1HQMD 1SEUA 1IS1A 3CQZA 3HKZA 1RRJA 3GTJA 3WVOA 3GTPA 2JA5A 1SFOA 3GTKA 1Q8IA 3GTMA 1TWFA 1WQFA 1R9TA 3M4AA 1Y698 1RR8C 1WQHA 2YU9A 1TWAA 3LF9A 2VUMA 3K59A 4QCLA 1A36A 1Y1VA 3K5MA 1T8IA 3K58A 4KAWX 1SC7A 1ISEA 4LMOA 4D3YA 1EH1A 4FGUA 1TGOA 4NOKA 4FYDA 1I6VD 2A6HD 1I3QA 3K5NA 3K5OA 1YNND 2R93A 1YNJD 1EK8A 3GTGA 1Y1WA 3K5LA 2E2IA 2B63A 3LHPS 1NH3A 5JSBB 4KC6A 4FXDA 4NOMA 3DU6A 1TWHA 2R4GA 2A6ED 1A35A 4KDDA 1GE9A 4C2MA 2A68D 3DU5A 1WCMA 3GTOA 1ZYRD 4H3TA 4L8IA 2Y0SA 4QIWA 3H0GA 2WAQA 1R49A 1A31A 2JA6A 2A69D 3GTQA 5C9HA 4Q5VA 4OYDB 2B9SB 1K4SA 3IAYA 3P9AA 1TWGA 3GTLA 4IP9A 2R92A 3SJRA 2NVYA 2CW0D 1LPQA 5CQGA 2JA7A
chains in the Genus database with same CATH topology
4KB4A 1K83A 3K57A 4AHCA 1I50A 2WB1A 2O5JD 4O26A 4IP8A 4D3ZA 4AYBA 4F3EA 5MLC9 1R5ZA 1DD5A 5JSNB 3FKIA 1K4TA 4GFQA 4NOLA 1IW7D 1V9MA 1SMYD 1TWCA 4AN8A 1EJ9A 2NVXA 2F4QA 2BE5D 2R7ZA 4KB2A 1MIUA 2PMZA 1WQGA 4EJ3A 1TL8A 3MAQA 4JLRC 3KYLA 2E2HA 4Q5GA 1HQMD 1SEUA 1IS1A 3CQZA 3HKZA 1RRJA 3GTJA 3WVOA 3GTPA 2JA5A 1SFOA 3GTKA 1Q8IA 3GTMA 1TWFA 1WQFA 1R9TA 3M4AA 1Y698 1RR8C 1WQHA 2YU9A 1TWAA 3LF9A 2VUMA 3K59A 4QCLA 1A36A 1Y1VA 3K5MA 1T8IA 3K58A 4KAWX 1SC7A 1ISEA 4LMOA 4D3YA 1EH1A 4FGUA 1TGOA 4NOKA 4FYDA 1I6VD 2A6HD 1I3QA 3K5NA 3K5OA 1YNND 2R93A 1YNJD 1EK8A 3GTGA 1Y1WA 3K5LA 2E2IA 2B63A 3LHPS 1NH3A 5JSBB 4KC6A 4FXDA 4NOMA 3DU6A 1TWHA 2R4GA 2A6ED 1A35A 4KDDA 1GE9A 4C2MA 2A68D 3DU5A 1WCMA 3GTOA 1ZYRD 4H3TA 4L8IA 2Y0SA 4QIWA 3H0GA 2WAQA 1R49A 1A31A 2JA6A 2A69D 3GTQA 5C9HA 4Q5VA 4OYDB 2B9SB 1K4SA 3IAYA 3P9AA 1TWGA 3GTLA 4IP9A 2R92A 3SJRA 2NVYA 2CW0D 1LPQA 5CQGA 2JA7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WVO A;  4AN8 A;  4F3E A;  4EJ3 A;  4H3T A; 
#chains in the Genus database with same CATH topology
 4KB4 A;  1K83 A;  3K57 A;  4AHC A;  1I50 A;  2WB1 A;  2O5J D;  4O26 A;  4IP8 A;  4D3Z A;  4AYB A;  4F3E A;  5MLC 9;  1R5Z A;  1DD5 A;  5JSN B;  3FKI A;  1K4T A;  4GFQ A;  4NOL A;  1IW7 D;  1V9M A;  1SMY D;  1TWC A;  4AN8 A;  1EJ9 A;  2NVX A;  2F4Q A;  2BE5 D;  2R7Z A;  4KB2 A;  1MIU A;  2PMZ A;  1WQG A;  4EJ3 A;  1TL8 A;  3MAQ A;  4JLR C;  3KYL A;  2E2H A;  4Q5G A;  1HQM D;  1SEU A;  1IS1 A;  3CQZ A;  3HKZ A;  1RRJ A;  3GTJ A;  3WVO A;  3GTP A;  2JA5 A;  1SFO A;  3GTK A;  1Q8I A;  3GTM A;  1TWF A;  1WQF A;  1R9T A;  3M4A A;  1Y69 8;  1RR8 C;  1WQH A;  2YU9 A;  1TWA A;  3LF9 A;  2VUM A;  3K59 A;  4QCL A;  1A36 A;  1Y1V A;  3K5M A;  1T8I A;  3K58 A;  4KAW X;  1SC7 A;  1ISE A;  4LMO A;  4D3Y A;  1EH1 A;  4FGU A;  1TGO A;  4NOK A;  4FYD A;  1I6V D;  2A6H D;  1I3Q A;  3K5N A;  3K5O A;  1YNN D;  2R93 A;  1YNJ D;  1EK8 A;  3GTG A;  1Y1W A;  3K5L A;  2E2I A;  2B63 A;  3LHP S;  1NH3 A;  5JSB B;  4KC6 A;  4FXD A;  4NOM A;  3DU6 A;  1TWH A;  2R4G A;  2A6E D;  1A35 A;  4KDD A;  1GE9 A;  4C2M A;  2A68 D;  3DU5 A;  1WCM A;  3GTO A;  1ZYR D;  4H3T A;  4L8I A;  2Y0S A;  4QIW A;  3H0G A;  2WAQ A;  1R49 A;  1A31 A;  2JA6 A;  2A69 D;  3GTQ A;  5C9H A;  4Q5V A;  4OYD B;  2B9S B;  1K4S A;  3IAY A;  3P9A A;  1TWG A;  3GTL A;  4IP9 A;  2R92 A;  3SJR A;  2NVY A;  2CW0 D;  1LPQ A;  5CQG A;  2JA7 A; 
#chains in the Genus database with same CATH homology
 4KB4 A;  1K83 A;  3K57 A;  4AHC A;  1I50 A;  2WB1 A;  2O5J D;  4O26 A;  4IP8 A;  4D3Z A;  4AYB A;  4F3E A;  5MLC 9;  1R5Z A;  1DD5 A;  5JSN B;  3FKI A;  1K4T A;  4GFQ A;  4NOL A;  1IW7 D;  1V9M A;  1SMY D;  1TWC A;  4AN8 A;  1EJ9 A;  2NVX A;  2F4Q A;  2BE5 D;  2R7Z A;  4KB2 A;  1MIU A;  2PMZ A;  1WQG A;  4EJ3 A;  1TL8 A;  3MAQ A;  4JLR C;  3KYL A;  2E2H A;  4Q5G A;  1HQM D;  1SEU A;  1IS1 A;  3CQZ A;  3HKZ A;  1RRJ A;  3GTJ A;  3WVO A;  3GTP A;  2JA5 A;  1SFO A;  3GTK A;  1Q8I A;  3GTM A;  1TWF A;  1WQF A;  1R9T A;  3M4A A;  1Y69 8;  1RR8 C;  1WQH A;  2YU9 A;  1TWA A;  3LF9 A;  2VUM A;  3K59 A;  4QCL A;  1A36 A;  1Y1V A;  3K5M A;  1T8I A;  3K58 A;  4KAW X;  1SC7 A;  1ISE A;  4LMO A;  4D3Y A;  1EH1 A;  4FGU A;  1TGO A;  4NOK A;  4FYD A;  1I6V D;  2A6H D;  1I3Q A;  3K5N A;  3K5O A;  1YNN D;  2R93 A;  1YNJ D;  1EK8 A;  3GTG A;  1Y1W A;  3K5L A;  2E2I A;  2B63 A;  3LHP S;  1NH3 A;  5JSB B;  4KC6 A;  4FXD A;  4NOM A;  3DU6 A;  1TWH A;  2R4G A;  2A6E D;  1A35 A;  4KDD A;  1GE9 A;  4C2M A;  2A68 D;  3DU5 A;  1WCM A;  3GTO A;  1ZYR D;  4H3T A;  4L8I A;  2Y0S A;  4QIW A;  3H0G A;  2WAQ A;  1R49 A;  1A31 A;  2JA6 A;  2A69 D;  3GTQ A;  5C9H A;  4Q5V A;  4OYD B;  2B9S B;  1K4S A;  3IAY A;  3P9A A;  1TWG A;  3GTL A;  4IP9 A;  2R92 A;  3SJR A;  2NVY A;  2CW0 D;  1LPQ A;  5CQG A;  2JA7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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