4F3EA

Crystal structure of thermus thermophilus hb8 casa
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
492
structure length
473
Chain Sequence
EKFNLIDEPWIPVLKGGRVVEVGIGEALLRAHEFARIETPSPLEEAVLHRLLLAVLHRALSGPRCPEDVLDWWRKGGFPQDPIRDYLNRFRDRFFLFHPEAPFLQVADLPEENPLPWSKLLPELENLPKATYAQAARALLVHQAFAPGGLLRRYGVGSAKDAPVARPALFLPTGQNLLETLLLNLVPYTPEDDAPIWEVPPLRLGDLEGARTKWPLTGRTRVYTWPARGVRLLDEGDGVRFMGYGPGVEPLEATHRDPMVAQRLDAKGNLLVLRLSEERSFWRDFSAMLPRQGGKVAATLEHAENLQGELEDEGLEGRITLRVLGQVSDQAKVLDIRREVYPLPSGLLTPKAEENLEKALKMAEELGQGLKHLAQEVAKAVVGERDSPYLEELTKLANSLPLERLYWHALDGAFPRFFARVEEEASLDLWREALRGAALEAWKATRRFLGTGARHLKALAQGEQEFGRLLGEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords CasA
publication title Crystal Structure of the Largest Subunit of a Bacterial RNA-guided Immune Complex and Its Role in DNA Target Binding.
pubmed doi rcsb
source organism Thermus thermophilus
molecule tags Immune system
total genus 158
structure length 473
sequence length 492
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-05-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09481 CRISPR_Cse1 CRISPR-associated protein Cse1 (CRISPR_cse1)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.100 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 4f3eA02
4EJ3A 4AN8A 3WVOA 4H3TA 4F3EA
chains in the Genus database with same CATH superfamily
1K4SA 3P9AA 1YNND 1I6VD 4QIWA 3MAQA 1YNJD 1WQHA 4EJ3A 2NVXA 1SC7A 2A68D 1TGOA 1R5ZA 4KB2A 2R93A 1SMYD 1R9TA 1ZYRD 4D3YA 2A6HD 4NOMA 4KC6A 4LMOA 1Y1WA 1RR8C 4GFQA 1WQGA 5C9HA 3LHPS 1K4TA 1MIUA 3LF9A 4L8IA 2WB1A 2NVYA 2E2IA 3K57A 3GTLA 1TWFA 4O26A 3GTPA 3K5NA 1A35A 1HQMD 3FKIA 4AN8A 2R4GA 4C2MA 4H3TA 4IP8A 5JSNB 4FGUA 4D3ZA 1IW7D 1DD5A 2VUMA 3GTMA 3DU5A 4F3EA 1EJ9A 1SEUA 1K83A 4IP9A 2B63A 3K58A 4KDDA 1NH3A 1I3QA 3GTKA 5CQGA 1R49A 1TL8A 2O5JD 2PMZA 4NOKA 3KYLA 2YU9A 2R7ZA 1WQFA 5JSBB 1T8IA 5MLC9 2A6ED 4AYBA 4KAWX 1WCMA 3GTJA 1I50A 1LPQA 4JLRC 1TWHA 2B9SB 3K5MA 3WVOA 1SFOA 4OYDB 2CW0D 3GTGA 2JA5A 3HKZA 1EH1A 1TWCA 2R92A 1EK8A 2A69D 3H0GA 1A36A 3M4AA 2Y0SA 3K59A 4NOLA 4Q5VA 1GE9A 1A31A 3CQZA 3K5LA 4KB4A 1Y698 1Y1VA 1TWAA 1IS1A 2E2HA 2F4QA 3GTQA 1TWGA 4AHCA 3K5OA 3IAYA 4FYDA 3SJRA 4QCLA 1RRJA 3DU6A 1Q8IA 3GTOA 1V9MA 2BE5D 2JA6A 1ISEA 4FXDA 4Q5GA 2JA7A 2WAQA
chains in the Genus database with same CATH topology
1K4SA 3P9AA 1YNND 1I6VD 4QIWA 3MAQA 1YNJD 1WQHA 4EJ3A 2NVXA 1SC7A 2A68D 1TGOA 1R5ZA 4KB2A 2R93A 1SMYD 1R9TA 1ZYRD 4D3YA 2A6HD 4NOMA 4KC6A 4LMOA 1Y1WA 1RR8C 4GFQA 1WQGA 5C9HA 3LHPS 1K4TA 1MIUA 3LF9A 4L8IA 2WB1A 2NVYA 2E2IA 3K57A 3GTLA 1TWFA 4O26A 3GTPA 3K5NA 1A35A 1HQMD 3FKIA 4AN8A 2R4GA 4C2MA 4H3TA 4IP8A 5JSNB 4FGUA 4D3ZA 1IW7D 1DD5A 2VUMA 3GTMA 3DU5A 4F3EA 1EJ9A 1SEUA 1K83A 4IP9A 2B63A 3K58A 4KDDA 1NH3A 1I3QA 3GTKA 5CQGA 1R49A 1TL8A 2O5JD 2PMZA 4NOKA 3KYLA 2YU9A 2R7ZA 1WQFA 5JSBB 1T8IA 5MLC9 2A6ED 4AYBA 4KAWX 1WCMA 3GTJA 1I50A 1LPQA 4JLRC 1TWHA 2B9SB 3K5MA 3WVOA 1SFOA 4OYDB 2CW0D 3GTGA 2JA5A 3HKZA 1EH1A 1TWCA 2R92A 1EK8A 2A69D 3H0GA 1A36A 3M4AA 2Y0SA 3K59A 4NOLA 4Q5VA 1GE9A 1A31A 3CQZA 3K5LA 4KB4A 1Y698 1Y1VA 1TWAA 1IS1A 2E2HA 2F4QA 3GTQA 1TWGA 4AHCA 3K5OA 3IAYA 4FYDA 3SJRA 4QCLA 1RRJA 3DU6A 1Q8IA 3GTOA 1V9MA 2BE5D 2JA6A 1ISEA 4FXDA 4Q5GA 2JA7A 2WAQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EJ3 A;  4AN8 A;  3WVO A;  4H3T A;  4F3E A; 
#chains in the Genus database with same CATH topology
 1K4S A;  3P9A A;  1YNN D;  1I6V D;  4QIW A;  3MAQ A;  1YNJ D;  1WQH A;  4EJ3 A;  2NVX A;  1SC7 A;  2A68 D;  1TGO A;  1R5Z A;  4KB2 A;  2R93 A;  1SMY D;  1R9T A;  1ZYR D;  4D3Y A;  2A6H D;  4NOM A;  4KC6 A;  4LMO A;  1Y1W A;  1RR8 C;  4GFQ A;  1WQG A;  5C9H A;  3LHP S;  1K4T A;  1MIU A;  3LF9 A;  4L8I A;  2WB1 A;  2NVY A;  2E2I A;  3K57 A;  3GTL A;  1TWF A;  4O26 A;  3GTP A;  3K5N A;  1A35 A;  1HQM D;  3FKI A;  4AN8 A;  2R4G A;  4C2M A;  4H3T A;  4IP8 A;  5JSN B;  4FGU A;  4D3Z A;  1IW7 D;  1DD5 A;  2VUM A;  3GTM A;  3DU5 A;  4F3E A;  1EJ9 A;  1SEU A;  1K83 A;  4IP9 A;  2B63 A;  3K58 A;  4KDD A;  1NH3 A;  1I3Q A;  3GTK A;  5CQG A;  1R49 A;  1TL8 A;  2O5J D;  2PMZ A;  4NOK A;  3KYL A;  2YU9 A;  2R7Z A;  1WQF A;  5JSB B;  1T8I A;  5MLC 9;  2A6E D;  4AYB A;  4KAW X;  1WCM A;  3GTJ A;  1I50 A;  1LPQ A;  4JLR C;  1TWH A;  2B9S B;  3K5M A;  3WVO A;  1SFO A;  4OYD B;  2CW0 D;  3GTG A;  2JA5 A;  3HKZ A;  1EH1 A;  1TWC A;  2R92 A;  1EK8 A;  2A69 D;  3H0G A;  1A36 A;  3M4A A;  2Y0S A;  3K59 A;  4NOL A;  4Q5V A;  1GE9 A;  1A31 A;  3CQZ A;  3K5L A;  4KB4 A;  1Y69 8;  1Y1V A;  1TWA A;  1IS1 A;  2E2H A;  2F4Q A;  3GTQ A;  1TWG A;  4AHC A;  3K5O A;  3IAY A;  4FYD A;  3SJR A;  4QCL A;  1RRJ A;  3DU6 A;  1Q8I A;  3GTO A;  1V9M A;  2BE5 D;  2JA6 A;  1ISE A;  4FXD A;  4Q5G A;  2JA7 A;  2WAQ A; 
#chains in the Genus database with same CATH homology
 1K4S A;  3P9A A;  1YNN D;  1I6V D;  4QIW A;  3MAQ A;  1YNJ D;  1WQH A;  4EJ3 A;  2NVX A;  1SC7 A;  2A68 D;  1TGO A;  1R5Z A;  4KB2 A;  2R93 A;  1SMY D;  1R9T A;  1ZYR D;  4D3Y A;  2A6H D;  4NOM A;  4KC6 A;  4LMO A;  1Y1W A;  1RR8 C;  4GFQ A;  1WQG A;  5C9H A;  3LHP S;  1K4T A;  1MIU A;  3LF9 A;  4L8I A;  2WB1 A;  2NVY A;  2E2I A;  3K57 A;  3GTL A;  1TWF A;  4O26 A;  3GTP A;  3K5N A;  1A35 A;  1HQM D;  3FKI A;  4AN8 A;  2R4G A;  4C2M A;  4H3T A;  4IP8 A;  5JSN B;  4FGU A;  4D3Z A;  1IW7 D;  1DD5 A;  2VUM A;  3GTM A;  3DU5 A;  4F3E A;  1EJ9 A;  1SEU A;  1K83 A;  4IP9 A;  2B63 A;  3K58 A;  4KDD A;  1NH3 A;  1I3Q A;  3GTK A;  5CQG A;  1R49 A;  1TL8 A;  2O5J D;  2PMZ A;  4NOK A;  3KYL A;  2YU9 A;  2R7Z A;  1WQF A;  5JSB B;  1T8I A;  5MLC 9;  2A6E D;  4AYB A;  4KAW X;  1WCM A;  3GTJ A;  1I50 A;  1LPQ A;  4JLR C;  1TWH A;  2B9S B;  3K5M A;  3WVO A;  1SFO A;  4OYD B;  2CW0 D;  3GTG A;  2JA5 A;  3HKZ A;  1EH1 A;  1TWC A;  2R92 A;  1EK8 A;  2A69 D;  3H0G A;  1A36 A;  3M4A A;  2Y0S A;  3K59 A;  4NOL A;  4Q5V A;  1GE9 A;  1A31 A;  3CQZ A;  3K5L A;  4KB4 A;  1Y69 8;  1Y1V A;  1TWA A;  1IS1 A;  2E2H A;  2F4Q A;  3GTQ A;  1TWG A;  4AHC A;  3K5O A;  3IAY A;  4FYD A;  3SJR A;  4QCL A;  1RRJ A;  3DU6 A;  1Q8I A;  3GTO A;  1V9M A;  2BE5 D;  2JA6 A;  1ISE A;  4FXD A;  4Q5G A;  2JA7 A;  2WAQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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