4F3EA

Crystal structure of thermus thermophilus hb8 casa
Total Genus 158
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
492
structure length
473
Chain Sequence
EKFNLIDEPWIPVLKGGRVVEVGIGEALLRAHEFARIETPSPLEEAVLHRLLLAVLHRALSGPRCPEDVLDWWRKGGFPQDPIRDYLNRFRDRFFLFHPEAPFLQVADLPEENPLPWSKLLPELENLPKATYAQAARALLVHQAFAPGGLLRRYGVGSAKDAPVARPALFLPTGQNLLETLLLNLVPYTPEDDAPIWEVPPLRLGDLEGARTKWPLTGRTRVYTWPARGVRLLDEGDGVRFMGYGPGVEPLEATHRDPMVAQRLDAKGNLLVLRLSEERSFWRDFSAMLPRQGGKVAATLEHAENLQGELEDEGLEGRITLRVLGQVSDQAKVLDIRREVYPLPSGLLTPKAEENLEKALKMAEELGQGLKHLAQEVAKAVVGERDSPYLEELTKLANSLPLERLYWHALDGAFPRFFARVEEEASLDLWREALRGAALEAWKATRRFLGTGARHLKALAQGEQEFGRLLGEL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Crystal Structure of the Largest Subunit of a Bacterial RNA-guided Immune Complex and Its Role in DNA Target Binding.
pubmed doi rcsb
molecule tags Immune system
source organism Thermus thermophilus
molecule keywords CasA
total genus 158
structure length 473
sequence length 492
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-05-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09481 CRISPR_Cse1 CRISPR-associated protein Cse1 (CRISPR_cse1)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.100 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 4f3eA02
4EJ3A 4H3TA 3WVOA 4AN8A 4F3EA
chains in the Genus database with same CATH superfamily
4QIWA 2VUMA 4H3TA 2O5JD 1TWGA 1NH3A 2WAQA 3K5OA 4FYDA 2WB1A 1A35A 2R4GA 1K4TA 3GTMA 4KDDA 3K5LA 1RR8C 1Q8IA 5MLC9 3H0GA 4Q5VA 4IP8A 3DU6A 2B9SB 4O26A 4D3ZA 3LF9A 3WVOA 4KB2A 3M4AA 4C2MA 4LMOA 3SJRA 3GTJA 1SMYD 2Y0SA 1R5ZA 3HKZA 4IP9A 1WQHA 4AYBA 2B63A 2A6HD 4NOKA 3K57A 1TL8A 1K4SA 2A69D 3GTGA 3GTOA 1WQFA 3GTKA 1DD5A 4KAWX 1TWFA 1TGOA 3GTLA 3GTQA 5C9HA 1IS1A 1EK8A 2A6ED 2JA5A 4AHCA 3IAYA 1TWHA 2R92A 1Y1WA 4FXDA 5CQGA 1I50A 3GTPA 1IW7D 1TWCA 1TWAA 4FGUA 2A68D 3KYLA 1EJ9A 2NVYA 1GE9A 5JSBB 1R9TA 1SEUA 1I3QA 1EH1A 4KC6A 1ISEA 1I6VD 3LHPS 4JLRC 1MIUA 1A31A 1SC7A 3K58A 1SFOA 1Y1VA 2BE5D 1R49A 3FKIA 5JSNB 2R7ZA 2CW0D 1WQGA 3P9AA 3K5NA 4GFQA 4D3YA 1V9MA 1K83A 4L8IA 4KB4A 3CQZA 1HQMD 1WCMA 2JA6A 2PMZA 2R93A 3K59A 3K5MA 4F3EA 4EJ3A 1LPQA 2E2IA 3MAQA 4Q5GA 1Y698 1T8IA 2F4QA 4OYDB 4AN8A 1A36A 1RRJA 4NOLA 3DU5A 4NOMA 2YU9A 2E2HA 2NVXA 1YNND 4QCLA 1YNJD 2JA7A 1ZYRD
chains in the Genus database with same CATH topology
4QIWA 2VUMA 4H3TA 2O5JD 1TWGA 1NH3A 2WAQA 3K5OA 4FYDA 2WB1A 1A35A 2R4GA 1K4TA 3GTMA 4KDDA 3K5LA 1RR8C 1Q8IA 5MLC9 3H0GA 4Q5VA 4IP8A 3DU6A 2B9SB 4O26A 4D3ZA 3LF9A 3WVOA 4KB2A 3M4AA 4C2MA 4LMOA 3SJRA 3GTJA 1SMYD 2Y0SA 1R5ZA 3HKZA 4IP9A 1WQHA 4AYBA 2B63A 2A6HD 4NOKA 3K57A 1TL8A 1K4SA 2A69D 3GTGA 3GTOA 1WQFA 3GTKA 1DD5A 4KAWX 1TWFA 1TGOA 3GTLA 3GTQA 5C9HA 1IS1A 1EK8A 2A6ED 2JA5A 4AHCA 3IAYA 1TWHA 2R92A 1Y1WA 4FXDA 5CQGA 1I50A 3GTPA 1IW7D 1TWCA 1TWAA 4FGUA 2A68D 3KYLA 1EJ9A 2NVYA 1GE9A 5JSBB 1R9TA 1SEUA 1I3QA 1EH1A 4KC6A 1ISEA 1I6VD 3LHPS 4JLRC 1MIUA 1A31A 1SC7A 3K58A 1SFOA 1Y1VA 2BE5D 1R49A 3FKIA 5JSNB 2R7ZA 2CW0D 1WQGA 3P9AA 3K5NA 4GFQA 4D3YA 1V9MA 1K83A 4L8IA 4KB4A 3CQZA 1HQMD 1WCMA 2JA6A 2PMZA 2R93A 3K59A 3K5MA 4F3EA 4EJ3A 1LPQA 2E2IA 3MAQA 4Q5GA 1Y698 1T8IA 2F4QA 4OYDB 4AN8A 1A36A 1RRJA 4NOLA 3DU5A 4NOMA 2YU9A 2E2HA 2NVXA 1YNND 4QCLA 1YNJD 2JA7A 1ZYRD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EJ3 A;  4H3T A;  3WVO A;  4AN8 A;  4F3E A; 
#chains in the Genus database with same CATH topology
 4QIW A;  2VUM A;  4H3T A;  2O5J D;  1TWG A;  1NH3 A;  2WAQ A;  3K5O A;  4FYD A;  2WB1 A;  1A35 A;  2R4G A;  1K4T A;  3GTM A;  4KDD A;  3K5L A;  1RR8 C;  1Q8I A;  5MLC 9;  3H0G A;  4Q5V A;  4IP8 A;  3DU6 A;  2B9S B;  4O26 A;  4D3Z A;  3LF9 A;  3WVO A;  4KB2 A;  3M4A A;  4C2M A;  4LMO A;  3SJR A;  3GTJ A;  1SMY D;  2Y0S A;  1R5Z A;  3HKZ A;  4IP9 A;  1WQH A;  4AYB A;  2B63 A;  2A6H D;  4NOK A;  3K57 A;  1TL8 A;  1K4S A;  2A69 D;  3GTG A;  3GTO A;  1WQF A;  3GTK A;  1DD5 A;  4KAW X;  1TWF A;  1TGO A;  3GTL A;  3GTQ A;  5C9H A;  1IS1 A;  1EK8 A;  2A6E D;  2JA5 A;  4AHC A;  3IAY A;  1TWH A;  2R92 A;  1Y1W A;  4FXD A;  5CQG A;  1I50 A;  3GTP A;  1IW7 D;  1TWC A;  1TWA A;  4FGU A;  2A68 D;  3KYL A;  1EJ9 A;  2NVY A;  1GE9 A;  5JSB B;  1R9T A;  1SEU A;  1I3Q A;  1EH1 A;  4KC6 A;  1ISE A;  1I6V D;  3LHP S;  4JLR C;  1MIU A;  1A31 A;  1SC7 A;  3K58 A;  1SFO A;  1Y1V A;  2BE5 D;  1R49 A;  3FKI A;  5JSN B;  2R7Z A;  2CW0 D;  1WQG A;  3P9A A;  3K5N A;  4GFQ A;  4D3Y A;  1V9M A;  1K83 A;  4L8I A;  4KB4 A;  3CQZ A;  1HQM D;  1WCM A;  2JA6 A;  2PMZ A;  2R93 A;  3K59 A;  3K5M A;  4F3E A;  4EJ3 A;  1LPQ A;  2E2I A;  3MAQ A;  4Q5G A;  1Y69 8;  1T8I A;  2F4Q A;  4OYD B;  4AN8 A;  1A36 A;  1RRJ A;  4NOL A;  3DU5 A;  4NOM A;  2YU9 A;  2E2H A;  2NVX A;  1YNN D;  4QCL A;  1YNJ D;  2JA7 A;  1ZYR D; 
#chains in the Genus database with same CATH homology
 4QIW A;  2VUM A;  4H3T A;  2O5J D;  1TWG A;  1NH3 A;  2WAQ A;  3K5O A;  4FYD A;  2WB1 A;  1A35 A;  2R4G A;  1K4T A;  3GTM A;  4KDD A;  3K5L A;  1RR8 C;  1Q8I A;  5MLC 9;  3H0G A;  4Q5V A;  4IP8 A;  3DU6 A;  2B9S B;  4O26 A;  4D3Z A;  3LF9 A;  3WVO A;  4KB2 A;  3M4A A;  4C2M A;  4LMO A;  3SJR A;  3GTJ A;  1SMY D;  2Y0S A;  1R5Z A;  3HKZ A;  4IP9 A;  1WQH A;  4AYB A;  2B63 A;  2A6H D;  4NOK A;  3K57 A;  1TL8 A;  1K4S A;  2A69 D;  3GTG A;  3GTO A;  1WQF A;  3GTK A;  1DD5 A;  4KAW X;  1TWF A;  1TGO A;  3GTL A;  3GTQ A;  5C9H A;  1IS1 A;  1EK8 A;  2A6E D;  2JA5 A;  4AHC A;  3IAY A;  1TWH A;  2R92 A;  1Y1W A;  4FXD A;  5CQG A;  1I50 A;  3GTP A;  1IW7 D;  1TWC A;  1TWA A;  4FGU A;  2A68 D;  3KYL A;  1EJ9 A;  2NVY A;  1GE9 A;  5JSB B;  1R9T A;  1SEU A;  1I3Q A;  1EH1 A;  4KC6 A;  1ISE A;  1I6V D;  3LHP S;  4JLR C;  1MIU A;  1A31 A;  1SC7 A;  3K58 A;  1SFO A;  1Y1V A;  2BE5 D;  1R49 A;  3FKI A;  5JSN B;  2R7Z A;  2CW0 D;  1WQG A;  3P9A A;  3K5N A;  4GFQ A;  4D3Y A;  1V9M A;  1K83 A;  4L8I A;  4KB4 A;  3CQZ A;  1HQM D;  1WCM A;  2JA6 A;  2PMZ A;  2R93 A;  3K59 A;  3K5M A;  4F3E A;  4EJ3 A;  1LPQ A;  2E2I A;  3MAQ A;  4Q5G A;  1Y69 8;  1T8I A;  2F4Q A;  4OYD B;  4AN8 A;  1A36 A;  1RRJ A;  4NOL A;  3DU5 A;  4NOM A;  2YU9 A;  2E2H A;  2NVX A;  1YNN D;  4QCL A;  1YNJ D;  2JA7 A;  1ZYR D; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...