4F3EA

Crystal structure of thermus thermophilus hb8 casa
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
492
structure length
473
Chain Sequence
b'EKFNLIDEPWIPVLKGGRVVEVGIGEALLRAHEFARIETPSPLEEAVLHRLLLAVLHRALSGPRCPEDVLDWWRKGGFPQDPIRDYLNRFRDRFFLFHPEAPFLQVADLPEENPLPWSKLLPELENLPKATYAQAARALLVHQAFAPGGLLRRYGVGSAKDAPVARPALFLPTGQNLLETLLLNLVPYTPEDDAPIWEVPPLRLGDLEGARTKWPLTGRTRVYTWPARGVRLLDEGDGVRFMGYGPGVEPLEATHRDPMVAQRLDAKGNLLVLRLSEERSFWRDFSAMLPRQGGKVAATLEHAENLQGELEDEGLEGRITLRVLGQVSDQAKVLDIRREVYPLPSGLLTPKAEENLEKALKMAEELGQGLKHLAQEVAKAVVGERDSPYLEELTKLANSLPLERLYWHALDGAFPRFFARVEEEASLDLWREALRGAALEAWKATRRFLGTGARHLKALAQGEQEFGRLLGEL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords CasA
publication title Crystal Structure of the Largest Subunit of a Bacterial RNA-guided Immune Complex and Its Role in DNA Target Binding.
pubmed doi rcsb
source organism Thermus thermophilus
molecule tags Immune system
total genus 158
structure length 473
sequence length 492
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-05-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09481 CRISPR_Cse1 CRISPR-associated protein Cse1 (CRISPR_cse1)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.100 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 4f3eA02
3WVOA 4H3TA 4F3EA 4EJ3A 4AN8A
chains in the Genus database with same CATH superfamily
1K4TA 2WB1A 1TWHA 3GTGA 1SC7A 1T8IA 1IS1A 4IP8A 2R93A 1WQGA 3CQZA 1A31A 1A35A 3GTMA 1R9TA 2PMZA 1TWGA 2F4QA 1RRJA 3GTJA 1NH3A 4D3YA 1SEUA 3GTPA 4OYDB 4JLRC 4GFQA 2JA6A 4AHCA 4F3EA 4LMOA 1I3QA 3H0GA 2Y0SA 1Y1VA 1K83A 4L8IA 1TWFA 3SJRA 2B9SB 1YNJD 3GTQA 1Y1WA 4EJ3A 2E2IA 2BE5D 2VUMA 4H3TA 1ZYRD 1TWAA 1TL8A 1TGOA 4FGUA 2E2HA 4KC6A 4FXDA 3DU5A 1R49A 1TWCA 2B63A 2NVYA 4FYDA 3K5LA 2NVXA 4NOMA 1K4SA 3GTLA 1YNND 1Y698 3LF9A 3LHPS 1WCMA 2R7ZA 2O5JD 4KDDA 3GTOA 3K58A 2A69D 4QCLA 4C2MA 3IAYA 1V9MA 2YU9A 2A6ED 4QIWA 3KYLA 4AN8A 3M4AA 1I6VD 5JSNB 5C9HA 4NOKA 5JSBB 3MAQA 1GE9A 1DD5A 2R92A 1MIUA 3DU6A 3K5OA 1IW7D 5CQGA 3K57A 2JA5A 1A36A 1Q8IA 1I50A 1LPQA 4KAWX 2WAQA 2JA7A 5MLC9 4AYBA 3K5MA 1SFOA 2A68D 3K5NA 1EJ9A 1EH1A 4Q5GA 4D3ZA 4IP9A 2A6HD 2CW0D 3FKIA 4O26A 1WQFA 1HQMD 1R5ZA 1ISEA 3GTKA 1WQHA 1SMYD 3HKZA 3WVOA 4Q5VA 4KB4A 4KB2A 4NOLA 1EK8A 3K59A 2R4GA 1RR8C 3P9AA
chains in the Genus database with same CATH topology
1K4TA 2WB1A 1TWHA 3GTGA 1SC7A 1T8IA 1IS1A 4IP8A 2R93A 1WQGA 3CQZA 1A31A 1A35A 3GTMA 1R9TA 2PMZA 1TWGA 2F4QA 1RRJA 3GTJA 1NH3A 4D3YA 1SEUA 3GTPA 4OYDB 4JLRC 4GFQA 2JA6A 4AHCA 4F3EA 4LMOA 1I3QA 3H0GA 2Y0SA 1Y1VA 1K83A 4L8IA 1TWFA 3SJRA 2B9SB 1YNJD 3GTQA 1Y1WA 4EJ3A 2E2IA 2BE5D 2VUMA 4H3TA 1ZYRD 1TWAA 1TL8A 1TGOA 4FGUA 2E2HA 4KC6A 4FXDA 3DU5A 1R49A 1TWCA 2B63A 2NVYA 4FYDA 3K5LA 2NVXA 4NOMA 1K4SA 3GTLA 1YNND 1Y698 3LF9A 3LHPS 1WCMA 2R7ZA 2O5JD 4KDDA 3GTOA 3K58A 2A69D 4QCLA 4C2MA 3IAYA 1V9MA 2YU9A 2A6ED 4QIWA 3KYLA 4AN8A 3M4AA 1I6VD 5JSNB 5C9HA 4NOKA 5JSBB 3MAQA 1GE9A 1DD5A 2R92A 1MIUA 3DU6A 3K5OA 1IW7D 5CQGA 3K57A 2JA5A 1A36A 1Q8IA 1I50A 1LPQA 4KAWX 2WAQA 2JA7A 5MLC9 4AYBA 3K5MA 1SFOA 2A68D 3K5NA 1EJ9A 1EH1A 4Q5GA 4D3ZA 4IP9A 2A6HD 2CW0D 3FKIA 4O26A 1WQFA 1HQMD 1R5ZA 1ISEA 3GTKA 1WQHA 1SMYD 3HKZA 3WVOA 4Q5VA 4KB4A 4KB2A 4NOLA 1EK8A 3K59A 2R4GA 1RR8C 3P9AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WVO A;  4H3T A;  4F3E A;  4EJ3 A;  4AN8 A; 
#chains in the Genus database with same CATH topology
 1K4T A;  2WB1 A;  1TWH A;  3GTG A;  1SC7 A;  1T8I A;  1IS1 A;  4IP8 A;  2R93 A;  1WQG A;  3CQZ A;  1A31 A;  1A35 A;  3GTM A;  1R9T A;  2PMZ A;  1TWG A;  2F4Q A;  1RRJ A;  3GTJ A;  1NH3 A;  4D3Y A;  1SEU A;  3GTP A;  4OYD B;  4JLR C;  4GFQ A;  2JA6 A;  4AHC A;  4F3E A;  4LMO A;  1I3Q A;  3H0G A;  2Y0S A;  1Y1V A;  1K83 A;  4L8I A;  1TWF A;  3SJR A;  2B9S B;  1YNJ D;  3GTQ A;  1Y1W A;  4EJ3 A;  2E2I A;  2BE5 D;  2VUM A;  4H3T A;  1ZYR D;  1TWA A;  1TL8 A;  1TGO A;  4FGU A;  2E2H A;  4KC6 A;  4FXD A;  3DU5 A;  1R49 A;  1TWC A;  2B63 A;  2NVY A;  4FYD A;  3K5L A;  2NVX A;  4NOM A;  1K4S A;  3GTL A;  1YNN D;  1Y69 8;  3LF9 A;  3LHP S;  1WCM A;  2R7Z A;  2O5J D;  4KDD A;  3GTO A;  3K58 A;  2A69 D;  4QCL A;  4C2M A;  3IAY A;  1V9M A;  2YU9 A;  2A6E D;  4QIW A;  3KYL A;  4AN8 A;  3M4A A;  1I6V D;  5JSN B;  5C9H A;  4NOK A;  5JSB B;  3MAQ A;  1GE9 A;  1DD5 A;  2R92 A;  1MIU A;  3DU6 A;  3K5O A;  1IW7 D;  5CQG A;  3K57 A;  2JA5 A;  1A36 A;  1Q8I A;  1I50 A;  1LPQ A;  4KAW X;  2WAQ A;  2JA7 A;  5MLC 9;  4AYB A;  3K5M A;  1SFO A;  2A68 D;  3K5N A;  1EJ9 A;  1EH1 A;  4Q5G A;  4D3Z A;  4IP9 A;  2A6H D;  2CW0 D;  3FKI A;  4O26 A;  1WQF A;  1HQM D;  1R5Z A;  1ISE A;  3GTK A;  1WQH A;  1SMY D;  3HKZ A;  3WVO A;  4Q5V A;  4KB4 A;  4KB2 A;  4NOL A;  1EK8 A;  3K59 A;  2R4G A;  1RR8 C;  3P9A A; 
#chains in the Genus database with same CATH homology
 1K4T A;  2WB1 A;  1TWH A;  3GTG A;  1SC7 A;  1T8I A;  1IS1 A;  4IP8 A;  2R93 A;  1WQG A;  3CQZ A;  1A31 A;  1A35 A;  3GTM A;  1R9T A;  2PMZ A;  1TWG A;  2F4Q A;  1RRJ A;  3GTJ A;  1NH3 A;  4D3Y A;  1SEU A;  3GTP A;  4OYD B;  4JLR C;  4GFQ A;  2JA6 A;  4AHC A;  4F3E A;  4LMO A;  1I3Q A;  3H0G A;  2Y0S A;  1Y1V A;  1K83 A;  4L8I A;  1TWF A;  3SJR A;  2B9S B;  1YNJ D;  3GTQ A;  1Y1W A;  4EJ3 A;  2E2I A;  2BE5 D;  2VUM A;  4H3T A;  1ZYR D;  1TWA A;  1TL8 A;  1TGO A;  4FGU A;  2E2H A;  4KC6 A;  4FXD A;  3DU5 A;  1R49 A;  1TWC A;  2B63 A;  2NVY A;  4FYD A;  3K5L A;  2NVX A;  4NOM A;  1K4S A;  3GTL A;  1YNN D;  1Y69 8;  3LF9 A;  3LHP S;  1WCM A;  2R7Z A;  2O5J D;  4KDD A;  3GTO A;  3K58 A;  2A69 D;  4QCL A;  4C2M A;  3IAY A;  1V9M A;  2YU9 A;  2A6E D;  4QIW A;  3KYL A;  4AN8 A;  3M4A A;  1I6V D;  5JSN B;  5C9H A;  4NOK A;  5JSB B;  3MAQ A;  1GE9 A;  1DD5 A;  2R92 A;  1MIU A;  3DU6 A;  3K5O A;  1IW7 D;  5CQG A;  3K57 A;  2JA5 A;  1A36 A;  1Q8I A;  1I50 A;  1LPQ A;  4KAW X;  2WAQ A;  2JA7 A;  5MLC 9;  4AYB A;  3K5M A;  1SFO A;  2A68 D;  3K5N A;  1EJ9 A;  1EH1 A;  4Q5G A;  4D3Z A;  4IP9 A;  2A6H D;  2CW0 D;  3FKI A;  4O26 A;  1WQF A;  1HQM D;  1R5Z A;  1ISE A;  3GTK A;  1WQH A;  1SMY D;  3HKZ A;  3WVO A;  4Q5V A;  4KB4 A;  4KB2 A;  4NOL A;  1EK8 A;  3K59 A;  2R4G A;  1RR8 C;  3P9A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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