4F3EA

Crystal structure of thermus thermophilus hb8 casa
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
492
structure length
473
Chain Sequence
EKFNLIDEPWIPVLKGGRVVEVGIGEALLRAHEFARIETPSPLEEAVLHRLLLAVLHRALSGPRCPEDVLDWWRKGGFPQDPIRDYLNRFRDRFFLFHPEAPFLQVADLPEENPLPWSKLLPELENLPKATYAQAARALLVHQAFAPGGLLRRYGVGSAKDAPVARPALFLPTGQNLLETLLLNLVPYTPEDDAPIWEVPPLRLGDLEGARTKWPLTGRTRVYTWPARGVRLLDEGDGVRFMGYGPGVEPLEATHRDPMVAQRLDAKGNLLVLRLSEERSFWRDFSAMLPRQGGKVAATLEHAENLQGELEDEGLEGRITLRVLGQVSDQAKVLDIRREVYPLPSGLLTPKAEENLEKALKMAEELGQGLKHLAQEVAKAVVGERDSPYLEELTKLANSLPLERLYWHALDGAFPRFFARVEEEASLDLWREALRGAALEAWKATRRFLGTGARHLKALAQGEQEFGRLLGEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of the Largest Subunit of a Bacterial RNA-guided Immune Complex and Its Role in DNA Target Binding.
pubmed doi rcsb
molecule keywords CasA
molecule tags Immune system
source organism Thermus thermophilus
total genus 158
structure length 473
sequence length 492
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-05-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09481 CRISPR_Cse1 CRISPR-associated protein Cse1 (CRISPR_cse1)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.100 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 4f3eA02
4F3EA 4AN8A 4H3TA 3WVOA 4EJ3A
chains in the Genus database with same CATH superfamily
2JA7A 1WQGA 1Y1WA 3GTOA 1IW7D 4F3EA 2BE5D 1Y1VA 3SJRA 4LMOA 2A68D 2F4QA 3GTKA 4FYDA 1K83A 1R5ZA 1LPQA 1HQMD 1TGOA 1WQFA 1WQHA 1RR8C 1A31A 3KYLA 1ISEA 2PMZA 1TWAA 3WVOA 1TL8A 3GTGA 3GTLA 1GE9A 4NOLA 2R92A 4IP9A 2A69D 1YNND 3K5MA 1K4SA 1R9TA 2WAQA 2B63A 2WB1A 4KB2A 3K59A 1WCMA 4GFQA 3K57A 3M4AA 2A6ED 1EK8A 1DD5A 4Q5VA 1SMYD 3K58A 4D3ZA 4D3YA 4NOMA 3DU6A 3P9AA 3LHPS 3LF9A 3K5NA 4JLRC 4IP8A 2JA5A 3CQZA 5MLC9 1T8IA 4KAWX 5C9HA 3DU5A 3GTJA 3GTMA 1SC7A 4OYDB 1EJ9A 3GTQA 2JA6A 3K5OA 4O26A 3K5LA 2A6HD 1ZYRD 1Q8IA 3H0GA 2B9SB 1Y698 5JSBB 5CQGA 2E2IA 3GTPA 1I3QA 4KC6A 2E2HA 2R4GA 1MIUA 4KB4A 1TWHA 5JSNB 1A35A 1R49A 1YNJD 1K4TA 2NVYA 4Q5GA 3HKZA 3IAYA 1SEUA 1TWGA 2VUMA 4H3TA 1EH1A 2R93A 4QCLA 4QIWA 4AN8A 4AHCA 1I50A 4NOKA 1RRJA 4FXDA 2CW0D 2Y0SA 2NVXA 1TWCA 3FKIA 1TWFA 4KDDA 4L8IA 1A36A 4FGUA 1IS1A 2O5JD 2R7ZA 4AYBA 1I6VD 3MAQA 1NH3A 2YU9A 4C2MA 1V9MA 4EJ3A 1SFOA
chains in the Genus database with same CATH topology
2JA7A 1WQGA 1Y1WA 3GTOA 1IW7D 4F3EA 2BE5D 1Y1VA 3SJRA 4LMOA 2A68D 2F4QA 3GTKA 4FYDA 1K83A 1R5ZA 1LPQA 1HQMD 1TGOA 1WQFA 1WQHA 1RR8C 1A31A 3KYLA 1ISEA 2PMZA 1TWAA 3WVOA 1TL8A 3GTGA 3GTLA 1GE9A 4NOLA 2R92A 4IP9A 2A69D 1YNND 3K5MA 1K4SA 1R9TA 2WAQA 2B63A 2WB1A 4KB2A 3K59A 1WCMA 4GFQA 3K57A 3M4AA 2A6ED 1EK8A 1DD5A 4Q5VA 1SMYD 3K58A 4D3ZA 4D3YA 4NOMA 3DU6A 3P9AA 3LHPS 3LF9A 3K5NA 4JLRC 4IP8A 2JA5A 3CQZA 5MLC9 1T8IA 4KAWX 5C9HA 3DU5A 3GTJA 3GTMA 1SC7A 4OYDB 1EJ9A 3GTQA 2JA6A 3K5OA 4O26A 3K5LA 2A6HD 1ZYRD 1Q8IA 3H0GA 2B9SB 1Y698 5JSBB 5CQGA 2E2IA 3GTPA 1I3QA 4KC6A 2E2HA 2R4GA 1MIUA 4KB4A 1TWHA 5JSNB 1A35A 1R49A 1YNJD 1K4TA 2NVYA 4Q5GA 3HKZA 3IAYA 1SEUA 1TWGA 2VUMA 4H3TA 1EH1A 2R93A 4QCLA 4QIWA 4AN8A 4AHCA 1I50A 4NOKA 1RRJA 4FXDA 2CW0D 2Y0SA 2NVXA 1TWCA 3FKIA 1TWFA 4KDDA 4L8IA 1A36A 4FGUA 1IS1A 2O5JD 2R7ZA 4AYBA 1I6VD 3MAQA 1NH3A 2YU9A 4C2MA 1V9MA 4EJ3A 1SFOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4F3E A;  4AN8 A;  4H3T A;  3WVO A;  4EJ3 A; 
#chains in the Genus database with same CATH topology
 2JA7 A;  1WQG A;  1Y1W A;  3GTO A;  1IW7 D;  4F3E A;  2BE5 D;  1Y1V A;  3SJR A;  4LMO A;  2A68 D;  2F4Q A;  3GTK A;  4FYD A;  1K83 A;  1R5Z A;  1LPQ A;  1HQM D;  1TGO A;  1WQF A;  1WQH A;  1RR8 C;  1A31 A;  3KYL A;  1ISE A;  2PMZ A;  1TWA A;  3WVO A;  1TL8 A;  3GTG A;  3GTL A;  1GE9 A;  4NOL A;  2R92 A;  4IP9 A;  2A69 D;  1YNN D;  3K5M A;  1K4S A;  1R9T A;  2WAQ A;  2B63 A;  2WB1 A;  4KB2 A;  3K59 A;  1WCM A;  4GFQ A;  3K57 A;  3M4A A;  2A6E D;  1EK8 A;  1DD5 A;  4Q5V A;  1SMY D;  3K58 A;  4D3Z A;  4D3Y A;  4NOM A;  3DU6 A;  3P9A A;  3LHP S;  3LF9 A;  3K5N A;  4JLR C;  4IP8 A;  2JA5 A;  3CQZ A;  5MLC 9;  1T8I A;  4KAW X;  5C9H A;  3DU5 A;  3GTJ A;  3GTM A;  1SC7 A;  4OYD B;  1EJ9 A;  3GTQ A;  2JA6 A;  3K5O A;  4O26 A;  3K5L A;  2A6H D;  1ZYR D;  1Q8I A;  3H0G A;  2B9S B;  1Y69 8;  5JSB B;  5CQG A;  2E2I A;  3GTP A;  1I3Q A;  4KC6 A;  2E2H A;  2R4G A;  1MIU A;  4KB4 A;  1TWH A;  5JSN B;  1A35 A;  1R49 A;  1YNJ D;  1K4T A;  2NVY A;  4Q5G A;  3HKZ A;  3IAY A;  1SEU A;  1TWG A;  2VUM A;  4H3T A;  1EH1 A;  2R93 A;  4QCL A;  4QIW A;  4AN8 A;  4AHC A;  1I50 A;  4NOK A;  1RRJ A;  4FXD A;  2CW0 D;  2Y0S A;  2NVX A;  1TWC A;  3FKI A;  1TWF A;  4KDD A;  4L8I A;  1A36 A;  4FGU A;  1IS1 A;  2O5J D;  2R7Z A;  4AYB A;  1I6V D;  3MAQ A;  1NH3 A;  2YU9 A;  4C2M A;  1V9M A;  4EJ3 A;  1SFO A; 
#chains in the Genus database with same CATH homology
 2JA7 A;  1WQG A;  1Y1W A;  3GTO A;  1IW7 D;  4F3E A;  2BE5 D;  1Y1V A;  3SJR A;  4LMO A;  2A68 D;  2F4Q A;  3GTK A;  4FYD A;  1K83 A;  1R5Z A;  1LPQ A;  1HQM D;  1TGO A;  1WQF A;  1WQH A;  1RR8 C;  1A31 A;  3KYL A;  1ISE A;  2PMZ A;  1TWA A;  3WVO A;  1TL8 A;  3GTG A;  3GTL A;  1GE9 A;  4NOL A;  2R92 A;  4IP9 A;  2A69 D;  1YNN D;  3K5M A;  1K4S A;  1R9T A;  2WAQ A;  2B63 A;  2WB1 A;  4KB2 A;  3K59 A;  1WCM A;  4GFQ A;  3K57 A;  3M4A A;  2A6E D;  1EK8 A;  1DD5 A;  4Q5V A;  1SMY D;  3K58 A;  4D3Z A;  4D3Y A;  4NOM A;  3DU6 A;  3P9A A;  3LHP S;  3LF9 A;  3K5N A;  4JLR C;  4IP8 A;  2JA5 A;  3CQZ A;  5MLC 9;  1T8I A;  4KAW X;  5C9H A;  3DU5 A;  3GTJ A;  3GTM A;  1SC7 A;  4OYD B;  1EJ9 A;  3GTQ A;  2JA6 A;  3K5O A;  4O26 A;  3K5L A;  2A6H D;  1ZYR D;  1Q8I A;  3H0G A;  2B9S B;  1Y69 8;  5JSB B;  5CQG A;  2E2I A;  3GTP A;  1I3Q A;  4KC6 A;  2E2H A;  2R4G A;  1MIU A;  4KB4 A;  1TWH A;  5JSN B;  1A35 A;  1R49 A;  1YNJ D;  1K4T A;  2NVY A;  4Q5G A;  3HKZ A;  3IAY A;  1SEU A;  1TWG A;  2VUM A;  4H3T A;  1EH1 A;  2R93 A;  4QCL A;  4QIW A;  4AN8 A;  4AHC A;  1I50 A;  4NOK A;  1RRJ A;  4FXD A;  2CW0 D;  2Y0S A;  2NVX A;  1TWC A;  3FKI A;  1TWF A;  4KDD A;  4L8I A;  1A36 A;  4FGU A;  1IS1 A;  2O5J D;  2R7Z A;  4AYB A;  1I6V D;  3MAQ A;  1NH3 A;  2YU9 A;  4C2M A;  1V9M A;  4EJ3 A;  1SFO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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