4F3EA

Crystal structure of thermus thermophilus hb8 casa
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
492
structure length
473
Chain Sequence
EKFNLIDEPWIPVLKGGRVVEVGIGEALLRAHEFARIETPSPLEEAVLHRLLLAVLHRALSGPRCPEDVLDWWRKGGFPQDPIRDYLNRFRDRFFLFHPEAPFLQVADLPEENPLPWSKLLPELENLPKATYAQAARALLVHQAFAPGGLLRRYGVGSAKDAPVARPALFLPTGQNLLETLLLNLVPYTPEDDAPIWEVPPLRLGDLEGARTKWPLTGRTRVYTWPARGVRLLDEGDGVRFMGYGPGVEPLEATHRDPMVAQRLDAKGNLLVLRLSEERSFWRDFSAMLPRQGGKVAATLEHAENLQGELEDEGLEGRITLRVLGQVSDQAKVLDIRREVYPLPSGLLTPKAEENLEKALKMAEELGQGLKHLAQEVAKAVVGERDSPYLEELTKLANSLPLERLYWHALDGAFPRFFARVEEEASLDLWREALRGAALEAWKATRRFLGTGARHLKALAQGEQEFGRLLGEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords CasA
publication title Crystal Structure of the Largest Subunit of a Bacterial RNA-guided Immune Complex and Its Role in DNA Target Binding.
pubmed doi rcsb
source organism Thermus thermophilus
total genus 158
structure length 473
sequence length 492
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-05-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09481 CRISPR_Cse1 CRISPR-associated protein Cse1 (CRISPR_cse1)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.100 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 4f3eA02
4H3TA 3WVOA 4EJ3A 4F3EA 4AN8A
chains in the Genus database with same CATH superfamily
2A69D 2NVXA 2WB1A 4Q5GA 3CQZA 1SFOA 1MIUA 5MLC9 1DD5A 1HQMD 2WAQA 4KB2A 1A36A 3GTOA 3DU5A 1SEUA 3LF9A 3K5OA 4KDDA 1EJ9A 3GTGA 3K5NA 4NOLA 2Y0SA 1YNND 1TWGA 2F4QA 1WQFA 1TWHA 2O5JD 1K4SA 4D3ZA 1K4TA 1A31A 5CQGA 4D3YA 3HKZA 1WQHA 1TWFA 3DU6A 2CW0D 1TGOA 1ISEA 2JA5A 4JLRC 1EK8A 2A68D 2E2HA 1R49A 4FYDA 1ZYRD 4QIWA 3FKIA 4C2MA 3KYLA 1R5ZA 2YU9A 2NVYA 1NH3A 4LMOA 1T8IA 3MAQA 3K57A 1K83A 2B9SB 3K5LA 3K5MA 4NOMA 1TL8A 3WVOA 3K58A 3P9AA 3H0GA 1I3QA 4FXDA 4AYBA 1EH1A 4IP9A 2B63A 3IAYA 1YNJD 4H3TA 2R7ZA 1IW7D 3GTLA 2A6HD 3K59A 4O26A 2A6ED 3SJRA 1LPQA 2R92A 3GTJA 4EJ3A 4AN8A 1RR8C 2VUMA 3M4AA 4FGUA 5JSBB 4Q5VA 4GFQA 4L8IA 4OYDB 1V9MA 1Y698 2BE5D 3LHPS 1A35A 1TWCA 3GTMA 4F3EA 2R93A 1Y1WA 4NOKA 3GTKA 1I50A 4KB4A 2E2IA 1GE9A 3GTPA 2JA6A 1WQGA 2R4GA 5C9HA 4IP8A 3GTQA 1Y1VA 4AHCA 1Q8IA 4KAWX 1SMYD 2JA7A 1RRJA 1WCMA 1I6VD 2PMZA 5JSNB 1IS1A 1TWAA 1SC7A 4KC6A 4QCLA 1R9TA
chains in the Genus database with same CATH topology
2A69D 2NVXA 2WB1A 4Q5GA 3CQZA 1SFOA 1MIUA 5MLC9 1DD5A 1HQMD 2WAQA 4KB2A 1A36A 3GTOA 3DU5A 1SEUA 3LF9A 3K5OA 4KDDA 1EJ9A 3GTGA 3K5NA 4NOLA 2Y0SA 1YNND 1TWGA 2F4QA 1WQFA 1TWHA 2O5JD 1K4SA 4D3ZA 1K4TA 1A31A 5CQGA 4D3YA 3HKZA 1WQHA 1TWFA 3DU6A 2CW0D 1TGOA 1ISEA 2JA5A 4JLRC 1EK8A 2A68D 2E2HA 1R49A 4FYDA 1ZYRD 4QIWA 3FKIA 4C2MA 3KYLA 1R5ZA 2YU9A 2NVYA 1NH3A 4LMOA 1T8IA 3MAQA 3K57A 1K83A 2B9SB 3K5LA 3K5MA 4NOMA 1TL8A 3WVOA 3K58A 3P9AA 3H0GA 1I3QA 4FXDA 4AYBA 1EH1A 4IP9A 2B63A 3IAYA 1YNJD 4H3TA 2R7ZA 1IW7D 3GTLA 2A6HD 3K59A 4O26A 2A6ED 3SJRA 1LPQA 2R92A 3GTJA 4EJ3A 4AN8A 1RR8C 2VUMA 3M4AA 4FGUA 5JSBB 4Q5VA 4GFQA 4L8IA 4OYDB 1V9MA 1Y698 2BE5D 3LHPS 1A35A 1TWCA 3GTMA 4F3EA 2R93A 1Y1WA 4NOKA 3GTKA 1I50A 4KB4A 2E2IA 1GE9A 3GTPA 2JA6A 1WQGA 2R4GA 5C9HA 4IP8A 3GTQA 1Y1VA 4AHCA 1Q8IA 4KAWX 1SMYD 2JA7A 1RRJA 1WCMA 1I6VD 2PMZA 5JSNB 1IS1A 1TWAA 1SC7A 4KC6A 4QCLA 1R9TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4H3T A;  3WVO A;  4EJ3 A;  4F3E A;  4AN8 A; 
#chains in the Genus database with same CATH topology
 2A69 D;  2NVX A;  2WB1 A;  4Q5G A;  3CQZ A;  1SFO A;  1MIU A;  5MLC 9;  1DD5 A;  1HQM D;  2WAQ A;  4KB2 A;  1A36 A;  3GTO A;  3DU5 A;  1SEU A;  3LF9 A;  3K5O A;  4KDD A;  1EJ9 A;  3GTG A;  3K5N A;  4NOL A;  2Y0S A;  1YNN D;  1TWG A;  2F4Q A;  1WQF A;  1TWH A;  2O5J D;  1K4S A;  4D3Z A;  1K4T A;  1A31 A;  5CQG A;  4D3Y A;  3HKZ A;  1WQH A;  1TWF A;  3DU6 A;  2CW0 D;  1TGO A;  1ISE A;  2JA5 A;  4JLR C;  1EK8 A;  2A68 D;  2E2H A;  1R49 A;  4FYD A;  1ZYR D;  4QIW A;  3FKI A;  4C2M A;  3KYL A;  1R5Z A;  2YU9 A;  2NVY A;  1NH3 A;  4LMO A;  1T8I A;  3MAQ A;  3K57 A;  1K83 A;  2B9S B;  3K5L A;  3K5M A;  4NOM A;  1TL8 A;  3WVO A;  3K58 A;  3P9A A;  3H0G A;  1I3Q A;  4FXD A;  4AYB A;  1EH1 A;  4IP9 A;  2B63 A;  3IAY A;  1YNJ D;  4H3T A;  2R7Z A;  1IW7 D;  3GTL A;  2A6H D;  3K59 A;  4O26 A;  2A6E D;  3SJR A;  1LPQ A;  2R92 A;  3GTJ A;  4EJ3 A;  4AN8 A;  1RR8 C;  2VUM A;  3M4A A;  4FGU A;  5JSB B;  4Q5V A;  4GFQ A;  4L8I A;  4OYD B;  1V9M A;  1Y69 8;  2BE5 D;  3LHP S;  1A35 A;  1TWC A;  3GTM A;  4F3E A;  2R93 A;  1Y1W A;  4NOK A;  3GTK A;  1I50 A;  4KB4 A;  2E2I A;  1GE9 A;  3GTP A;  2JA6 A;  1WQG A;  2R4G A;  5C9H A;  4IP8 A;  3GTQ A;  1Y1V A;  4AHC A;  1Q8I A;  4KAW X;  1SMY D;  2JA7 A;  1RRJ A;  1WCM A;  1I6V D;  2PMZ A;  5JSN B;  1IS1 A;  1TWA A;  1SC7 A;  4KC6 A;  4QCL A;  1R9T A; 
#chains in the Genus database with same CATH homology
 2A69 D;  2NVX A;  2WB1 A;  4Q5G A;  3CQZ A;  1SFO A;  1MIU A;  5MLC 9;  1DD5 A;  1HQM D;  2WAQ A;  4KB2 A;  1A36 A;  3GTO A;  3DU5 A;  1SEU A;  3LF9 A;  3K5O A;  4KDD A;  1EJ9 A;  3GTG A;  3K5N A;  4NOL A;  2Y0S A;  1YNN D;  1TWG A;  2F4Q A;  1WQF A;  1TWH A;  2O5J D;  1K4S A;  4D3Z A;  1K4T A;  1A31 A;  5CQG A;  4D3Y A;  3HKZ A;  1WQH A;  1TWF A;  3DU6 A;  2CW0 D;  1TGO A;  1ISE A;  2JA5 A;  4JLR C;  1EK8 A;  2A68 D;  2E2H A;  1R49 A;  4FYD A;  1ZYR D;  4QIW A;  3FKI A;  4C2M A;  3KYL A;  1R5Z A;  2YU9 A;  2NVY A;  1NH3 A;  4LMO A;  1T8I A;  3MAQ A;  3K57 A;  1K83 A;  2B9S B;  3K5L A;  3K5M A;  4NOM A;  1TL8 A;  3WVO A;  3K58 A;  3P9A A;  3H0G A;  1I3Q A;  4FXD A;  4AYB A;  1EH1 A;  4IP9 A;  2B63 A;  3IAY A;  1YNJ D;  4H3T A;  2R7Z A;  1IW7 D;  3GTL A;  2A6H D;  3K59 A;  4O26 A;  2A6E D;  3SJR A;  1LPQ A;  2R92 A;  3GTJ A;  4EJ3 A;  4AN8 A;  1RR8 C;  2VUM A;  3M4A A;  4FGU A;  5JSB B;  4Q5V A;  4GFQ A;  4L8I A;  4OYD B;  1V9M A;  1Y69 8;  2BE5 D;  3LHP S;  1A35 A;  1TWC A;  3GTM A;  4F3E A;  2R93 A;  1Y1W A;  4NOK A;  3GTK A;  1I50 A;  4KB4 A;  2E2I A;  1GE9 A;  3GTP A;  2JA6 A;  1WQG A;  2R4G A;  5C9H A;  4IP8 A;  3GTQ A;  1Y1V A;  4AHC A;  1Q8I A;  4KAW X;  1SMY D;  2JA7 A;  1RRJ A;  1WCM A;  1I6V D;  2PMZ A;  5JSN B;  1IS1 A;  1TWA A;  1SC7 A;  4KC6 A;  4QCL A;  1R9T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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