4F3EA

Crystal structure of thermus thermophilus hb8 casa
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
492
structure length
473
Chain Sequence
EKFNLIDEPWIPVLKGGRVVEVGIGEALLRAHEFARIETPSPLEEAVLHRLLLAVLHRALSGPRCPEDVLDWWRKGGFPQDPIRDYLNRFRDRFFLFHPEAPFLQVADLPEENPLPWSKLLPELENLPKATYAQAARALLVHQAFAPGGLLRRYGVGSAKDAPVARPALFLPTGQNLLETLLLNLVPYTPEDDAPIWEVPPLRLGDLEGARTKWPLTGRTRVYTWPARGVRLLDEGDGVRFMGYGPGVEPLEATHRDPMVAQRLDAKGNLLVLRLSEERSFWRDFSAMLPRQGGKVAATLEHAENLQGELEDEGLEGRITLRVLGQVSDQAKVLDIRREVYPLPSGLLTPKAEENLEKALKMAEELGQGLKHLAQEVAKAVVGERDSPYLEELTKLANSLPLERLYWHALDGAFPRFFARVEEEASLDLWREALRGAALEAWKATRRFLGTGARHLKALAQGEQEFGRLLGEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of the Largest Subunit of a Bacterial RNA-guided Immune Complex and Its Role in DNA Target Binding.
pubmed doi rcsb
source organism Thermus thermophilus
molecule tags Immune system
molecule keywords CasA
total genus 158
structure length 473
sequence length 492
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-05-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09481 CRISPR_Cse1 CRISPR-associated protein Cse1 (CRISPR_cse1)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.100 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 4f3eA02
4AN8A 3WVOA 4H3TA 4EJ3A 4F3EA
chains in the Genus database with same CATH superfamily
2E2IA 2NVXA 2Y0SA 1ZYRD 4QIWA 1TL8A 2BE5D 2YU9A 5CQGA 1Y1WA 2E2HA 1V9MA 4IP8A 3P9AA 1SC7A 1HQMD 4O26A 4GFQA 5C9HA 4KDDA 2WAQA 4FXDA 4NOMA 2VUMA 3GTKA 4KB2A 1RR8C 1EJ9A 3CQZA 2F4QA 4FYDA 1TWFA 1A36A 5MLC9 1R9TA 1T8IA 2A6HD 1MIUA 4KAWX 4L8IA 1A35A 1WQHA 4QCLA 1SMYD 1R5ZA 4Q5VA 4F3EA 3KYLA 3K5LA 1TWAA 1WQGA 3IAYA 2R7ZA 4AYBA 4OYDB 4AHCA 1WCMA 4KB4A 3GTOA 1Y698 4D3YA 1TWHA 4C2MA 4KC6A 2O5JD 3GTPA 1Y1VA 2A68D 1K4SA 1RRJA 3FKIA 1K4TA 1TWCA 1SFOA 1EH1A 1TGOA 1A31A 3LHPS 3K58A 3HKZA 4EJ3A 3K57A 2WB1A 1EK8A 2NVYA 4LMOA 4NOKA 1IW7D 3GTQA 2JA5A 3DU6A 4AN8A 1NH3A 4JLRC 1I6VD 2A6ED 1R49A 3GTLA 2JA7A 3K5OA 3DU5A 3SJRA 4H3TA 4IP9A 1YNJD 1ISEA 2JA6A 1I3QA 3GTJA 1WQFA 1LPQA 3M4AA 1Q8IA 2B9SB 4D3ZA 2A69D 5JSNB 1DD5A 4NOLA 4FGUA 3H0GA 5JSBB 2CW0D 1K83A 2B63A 2PMZA 3K5MA 1I50A 3WVOA 1YNND 3K59A 2R92A 4Q5GA 3MAQA 1GE9A 3LF9A 2R93A 3GTGA 3K5NA 2R4GA 1SEUA 1IS1A 1TWGA 3GTMA
chains in the Genus database with same CATH topology
2E2IA 2NVXA 2Y0SA 1ZYRD 4QIWA 1TL8A 2BE5D 2YU9A 5CQGA 1Y1WA 2E2HA 1V9MA 4IP8A 3P9AA 1SC7A 1HQMD 4O26A 4GFQA 5C9HA 4KDDA 2WAQA 4FXDA 4NOMA 2VUMA 3GTKA 4KB2A 1RR8C 1EJ9A 3CQZA 2F4QA 4FYDA 1TWFA 1A36A 5MLC9 1R9TA 1T8IA 2A6HD 1MIUA 4KAWX 4L8IA 1A35A 1WQHA 4QCLA 1SMYD 1R5ZA 4Q5VA 4F3EA 3KYLA 3K5LA 1TWAA 1WQGA 3IAYA 2R7ZA 4AYBA 4OYDB 4AHCA 1WCMA 4KB4A 3GTOA 1Y698 4D3YA 1TWHA 4C2MA 4KC6A 2O5JD 3GTPA 1Y1VA 2A68D 1K4SA 1RRJA 3FKIA 1K4TA 1TWCA 1SFOA 1EH1A 1TGOA 1A31A 3LHPS 3K58A 3HKZA 4EJ3A 3K57A 2WB1A 1EK8A 2NVYA 4LMOA 4NOKA 1IW7D 3GTQA 2JA5A 3DU6A 4AN8A 1NH3A 4JLRC 1I6VD 2A6ED 1R49A 3GTLA 2JA7A 3K5OA 3DU5A 3SJRA 4H3TA 4IP9A 1YNJD 1ISEA 2JA6A 1I3QA 3GTJA 1WQFA 1LPQA 3M4AA 1Q8IA 2B9SB 4D3ZA 2A69D 5JSNB 1DD5A 4NOLA 4FGUA 3H0GA 5JSBB 2CW0D 1K83A 2B63A 2PMZA 3K5MA 1I50A 3WVOA 1YNND 3K59A 2R92A 4Q5GA 3MAQA 1GE9A 3LF9A 2R93A 3GTGA 3K5NA 2R4GA 1SEUA 1IS1A 1TWGA 3GTMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AN8 A;  3WVO A;  4H3T A;  4EJ3 A;  4F3E A; 
#chains in the Genus database with same CATH topology
 2E2I A;  2NVX A;  2Y0S A;  1ZYR D;  4QIW A;  1TL8 A;  2BE5 D;  2YU9 A;  5CQG A;  1Y1W A;  2E2H A;  1V9M A;  4IP8 A;  3P9A A;  1SC7 A;  1HQM D;  4O26 A;  4GFQ A;  5C9H A;  4KDD A;  2WAQ A;  4FXD A;  4NOM A;  2VUM A;  3GTK A;  4KB2 A;  1RR8 C;  1EJ9 A;  3CQZ A;  2F4Q A;  4FYD A;  1TWF A;  1A36 A;  5MLC 9;  1R9T A;  1T8I A;  2A6H D;  1MIU A;  4KAW X;  4L8I A;  1A35 A;  1WQH A;  4QCL A;  1SMY D;  1R5Z A;  4Q5V A;  4F3E A;  3KYL A;  3K5L A;  1TWA A;  1WQG A;  3IAY A;  2R7Z A;  4AYB A;  4OYD B;  4AHC A;  1WCM A;  4KB4 A;  3GTO A;  1Y69 8;  4D3Y A;  1TWH A;  4C2M A;  4KC6 A;  2O5J D;  3GTP A;  1Y1V A;  2A68 D;  1K4S A;  1RRJ A;  3FKI A;  1K4T A;  1TWC A;  1SFO A;  1EH1 A;  1TGO A;  1A31 A;  3LHP S;  3K58 A;  3HKZ A;  4EJ3 A;  3K57 A;  2WB1 A;  1EK8 A;  2NVY A;  4LMO A;  4NOK A;  1IW7 D;  3GTQ A;  2JA5 A;  3DU6 A;  4AN8 A;  1NH3 A;  4JLR C;  1I6V D;  2A6E D;  1R49 A;  3GTL A;  2JA7 A;  3K5O A;  3DU5 A;  3SJR A;  4H3T A;  4IP9 A;  1YNJ D;  1ISE A;  2JA6 A;  1I3Q A;  3GTJ A;  1WQF A;  1LPQ A;  3M4A A;  1Q8I A;  2B9S B;  4D3Z A;  2A69 D;  5JSN B;  1DD5 A;  4NOL A;  4FGU A;  3H0G A;  5JSB B;  2CW0 D;  1K83 A;  2B63 A;  2PMZ A;  3K5M A;  1I50 A;  3WVO A;  1YNN D;  3K59 A;  2R92 A;  4Q5G A;  3MAQ A;  1GE9 A;  3LF9 A;  2R93 A;  3GTG A;  3K5N A;  2R4G A;  1SEU A;  1IS1 A;  1TWG A;  3GTM A; 
#chains in the Genus database with same CATH homology
 2E2I A;  2NVX A;  2Y0S A;  1ZYR D;  4QIW A;  1TL8 A;  2BE5 D;  2YU9 A;  5CQG A;  1Y1W A;  2E2H A;  1V9M A;  4IP8 A;  3P9A A;  1SC7 A;  1HQM D;  4O26 A;  4GFQ A;  5C9H A;  4KDD A;  2WAQ A;  4FXD A;  4NOM A;  2VUM A;  3GTK A;  4KB2 A;  1RR8 C;  1EJ9 A;  3CQZ A;  2F4Q A;  4FYD A;  1TWF A;  1A36 A;  5MLC 9;  1R9T A;  1T8I A;  2A6H D;  1MIU A;  4KAW X;  4L8I A;  1A35 A;  1WQH A;  4QCL A;  1SMY D;  1R5Z A;  4Q5V A;  4F3E A;  3KYL A;  3K5L A;  1TWA A;  1WQG A;  3IAY A;  2R7Z A;  4AYB A;  4OYD B;  4AHC A;  1WCM A;  4KB4 A;  3GTO A;  1Y69 8;  4D3Y A;  1TWH A;  4C2M A;  4KC6 A;  2O5J D;  3GTP A;  1Y1V A;  2A68 D;  1K4S A;  1RRJ A;  3FKI A;  1K4T A;  1TWC A;  1SFO A;  1EH1 A;  1TGO A;  1A31 A;  3LHP S;  3K58 A;  3HKZ A;  4EJ3 A;  3K57 A;  2WB1 A;  1EK8 A;  2NVY A;  4LMO A;  4NOK A;  1IW7 D;  3GTQ A;  2JA5 A;  3DU6 A;  4AN8 A;  1NH3 A;  4JLR C;  1I6V D;  2A6E D;  1R49 A;  3GTL A;  2JA7 A;  3K5O A;  3DU5 A;  3SJR A;  4H3T A;  4IP9 A;  1YNJ D;  1ISE A;  2JA6 A;  1I3Q A;  3GTJ A;  1WQF A;  1LPQ A;  3M4A A;  1Q8I A;  2B9S B;  4D3Z A;  2A69 D;  5JSN B;  1DD5 A;  4NOL A;  4FGU A;  3H0G A;  5JSB B;  2CW0 D;  1K83 A;  2B63 A;  2PMZ A;  3K5M A;  1I50 A;  3WVO A;  1YNN D;  3K59 A;  2R92 A;  4Q5G A;  3MAQ A;  1GE9 A;  3LF9 A;  2R93 A;  3GTG A;  3K5N A;  2R4G A;  1SEU A;  1IS1 A;  1TWG A;  3GTM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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