1R5ZA

Crystal structure of subunit c of v-atpase
Total Genus 123
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
123
sequence length
320
structure length
320
Chain Sequence
DDFAYLNARVRVRRGTLLKESFFQEALDLSFADFLRLLSETVYGGELAGQGLPDVDRAVLRTQAKLVGDLPRLVTGEAREAVRLLLLRNDLHNLQALLRAKATGRPFEEVLLLPGTLREEVWRQAYEAQDPAGMAQVLAVPGHPLARALRAVLRETQDLARVEALLAKRFFEDVAKAAKGLDQPALRDYLALEVDAENLRTAFKLQGSGLAPDAFFLKGGRFVDRVRFARLMEGDYAVLDELSGTPFSGLSGVRDLKALERGLRCVLLKEAKKGVQDPLGVGLVLAYVKEREWEAVRLRLLARRAYFGLPRAQVEEEVVC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords V-type ATP synthase subunit C
publication title Crystal structure of a central stalk subunit C and reversible association/dissociation of vacuole-type ATPase.
pubmed doi rcsb
source organism Thermus thermophilus
total genus 123
structure length 320
sequence length 320
chains with identical sequence B, C
ec nomenclature ec 3.6.3.14: Transferred entry: 7.1.2.2.
pdb deposition date 2003-10-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01992 vATP-synt_AC39 ATP synthase (C/AC39) subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.50 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 1r5zA01
1.20.1690.10 Mainly Alpha Up-down Bundle V-type ATP synthase subunit C fold V-type ATP synthase subunit C domain 1r5zA02
1.20.1690.10 Mainly Alpha Up-down Bundle V-type ATP synthase subunit C fold V-type ATP synthase subunit C domain 1r5zA03
1V9MA 1R5ZA
chains in the Genus database with same CATH superfamily
2A69D 2VUMA 1Q8IA 2WB1A 4F3EA 2R4GA 1R49A 1MIUA 3CQZA 2Y0SA 2R93A 1OHFA 2JA5A 4AYBA 1EK8A 2E2IA 4LMOA 1I50A 3K5NA 5C9HA 1TWAA 1ISEA 1K4SA 2A6ED 1SFOA 3GTGA 1Y1WA 3DU6A 2R92A 4AN8A 1HQMD 4H3TA 2BE5D 4OYDB 1R9TA 2A6HD 4NOKA 3FKIA 5MLC9 2JA6A 1IS1A 1A36A 3GTKA 3P9AA 1T8IA 1V9MA 2WAQA 1Y1VA 1Y698 2R7ZA 1GE9A 1TWGA 3IAYA 1IW7D 4FYDA 1RR8C 5JSNB 1TWCA 3DU5A 2CW0D 4KAWX 1RRJA 3WVOA 2B63A 2JA7A 2QQPA 4Q5VA 1R5ZA 4C2MA 2NVYA 4IP8A 3MAQA 1WQFA 1YNJD 3H0GA 1WQHA 1NH3A 1I6VD 1I3QA 3HKZA 3LHPS 3SJRA 1K83A 1A31A 1SMYD 3K58A 1TWFA 3S6PA 2O5JD 4D3YA 3K59A 3KYLA 3LF9A 1DD5A 3K5MA 2B9SB 1YNND 1EH1A 4EJ3A 2YU9A 3K5OA 4O26A 4QCLA 2PMZA 4L8IA 3GTOA 4NOMA 3M4AA 2NVXA 4FGUA 1EJ9A 5CQGA 3GTPA 4IP9A 1TGOA 1LPQA 3GTLA 4KDDA 2A68D 3K57A 4FXDA 4AHCA 5JSBB 1TWHA 3K5LA 1WCMA 4NOLA 4Q5GA 2F4QA 4GFQA 1TL8A 4KB2A 1A35A 3GTQA 4KC6A 1SEUA 3GTMA 3GTJA 4JLRC 2E2HA 1WQGA 4QIWA 4KB4A 4D3ZA 1SC7A 1K4TA 1ZYRD
chains in the Genus database with same CATH topology
2A69D 2VUMA 1Q8IA 2WB1A 4F3EA 2R4GA 1R49A 1MIUA 3CQZA 2Y0SA 2R93A 2JA5A 4AYBA 1EK8A 2E2IA 4LMOA 1I50A 3K5NA 5C9HA 1TWAA 1ISEA 1K4SA 2A6ED 1SFOA 3GTGA 1Y1WA 3DU6A 2R92A 4AN8A 1HQMD 4H3TA 2BE5D 4OYDB 1R9TA 2A6HD 4NOKA 3FKIA 5MLC9 2JA6A 1IS1A 1A36A 3GTKA 3P9AA 1T8IA 1V9MA 2WAQA 1Y1VA 1Y698 2R7ZA 1GE9A 1TWGA 3IAYA 1IW7D 4FYDA 1RR8C 5JSNB 1TWCA 3DU5A 2CW0D 4KAWX 1RRJA 3WVOA 2B63A 2JA7A 4Q5VA 1R5ZA 4C2MA 2NVYA 4IP8A 3MAQA 1WQFA 1YNJD 3H0GA 1WQHA 1NH3A 1I6VD 1I3QA 3HKZA 3LHPS 3SJRA 1K83A 1A31A 1SMYD 3K58A 1TWFA 2O5JD 4D3YA 3K59A 3KYLA 3LF9A 1DD5A 3K5MA 2B9SB 1YNND 1EH1A 4EJ3A 2YU9A 3K5OA 4O26A 4QCLA 2PMZA 4L8IA 3GTOA 4NOMA 3M4AA 2NVXA 4FGUA 1EJ9A 5CQGA 3GTPA 4IP9A 1TGOA 1LPQA 3GTLA 4KDDA 2A68D 3K57A 4FXDA 4AHCA 5JSBB 1TWHA 3K5LA 1WCMA 4NOLA 4Q5GA 2F4QA 4GFQA 1TL8A 4KB2A 1A35A 3GTQA 4KC6A 1SEUA 3GTMA 3GTJA 4JLRC 2E2HA 1WQGA 4QIWA 4KB4A 4D3ZA 1SC7A 1K4TA 1ZYRD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1V9M A;  1R5Z A; 
#chains in the Genus database with same CATH topology
 2A69 D;  2VUM A;  1Q8I A;  2WB1 A;  4F3E A;  2R4G A;  1R49 A;  1MIU A;  3CQZ A;  2Y0S A;  2R93 A;  1OHF A;  2JA5 A;  4AYB A;  1EK8 A;  2E2I A;  4LMO A;  1I50 A;  3K5N A;  5C9H A;  1TWA A;  1ISE A;  1K4S A;  2A6E D;  1SFO A;  3GTG A;  1Y1W A;  3DU6 A;  2R92 A;  4AN8 A;  1HQM D;  4H3T A;  2BE5 D;  4OYD B;  1R9T A;  2A6H D;  4NOK A;  3FKI A;  5MLC 9;  2JA6 A;  1IS1 A;  1A36 A;  3GTK A;  3P9A A;  1T8I A;  1V9M A;  2WAQ A;  1Y1V A;  1Y69 8;  2R7Z A;  1GE9 A;  1TWG A;  3IAY A;  1IW7 D;  4FYD A;  1RR8 C;  5JSN B;  1TWC A;  3DU5 A;  2CW0 D;  4KAW X;  1RRJ A;  3WVO A;  2B63 A;  2JA7 A;  2QQP A;  4Q5V A;  1R5Z A;  4C2M A;  2NVY A;  4IP8 A;  3MAQ A;  1WQF A;  1YNJ D;  3H0G A;  1WQH A;  1NH3 A;  1I6V D;  1I3Q A;  3HKZ A;  3LHP S;  3SJR A;  1K83 A;  1A31 A;  1SMY D;  3K58 A;  1TWF A;  3S6P A;  2O5J D;  4D3Y A;  3K59 A;  3KYL A;  3LF9 A;  1DD5 A;  3K5M A;  2B9S B;  1YNN D;  1EH1 A;  4EJ3 A;  2YU9 A;  3K5O A;  4O26 A;  4QCL A;  2PMZ A;  4L8I A;  3GTO A;  4NOM A;  3M4A A;  2NVX A;  4FGU A;  1EJ9 A;  5CQG A;  3GTP A;  4IP9 A;  1TGO A;  1LPQ A;  3GTL A;  4KDD A;  2A68 D;  3K57 A;  4FXD A;  4AHC A;  5JSB B;  1TWH A;  3K5L A;  1WCM A;  4NOL A;  4Q5G A;  2F4Q A;  4GFQ A;  1TL8 A;  4KB2 A;  1A35 A;  3GTQ A;  4KC6 A;  1SEU A;  3GTM A;  3GTJ A;  4JLR C;  2E2H A;  1WQG A;  4QIW A;  4KB4 A;  4D3Z A;  1SC7 A;  1K4T A;  1ZYR D; 
#chains in the Genus database with same CATH homology
 2A69 D;  2VUM A;  1Q8I A;  2WB1 A;  4F3E A;  2R4G A;  1R49 A;  1MIU A;  3CQZ A;  2Y0S A;  2R93 A;  2JA5 A;  4AYB A;  1EK8 A;  2E2I A;  4LMO A;  1I50 A;  3K5N A;  5C9H A;  1TWA A;  1ISE A;  1K4S A;  2A6E D;  1SFO A;  3GTG A;  1Y1W A;  3DU6 A;  2R92 A;  4AN8 A;  1HQM D;  4H3T A;  2BE5 D;  4OYD B;  1R9T A;  2A6H D;  4NOK A;  3FKI A;  5MLC 9;  2JA6 A;  1IS1 A;  1A36 A;  3GTK A;  3P9A A;  1T8I A;  1V9M A;  2WAQ A;  1Y1V A;  1Y69 8;  2R7Z A;  1GE9 A;  1TWG A;  3IAY A;  1IW7 D;  4FYD A;  1RR8 C;  5JSN B;  1TWC A;  3DU5 A;  2CW0 D;  4KAW X;  1RRJ A;  3WVO A;  2B63 A;  2JA7 A;  4Q5V A;  1R5Z A;  4C2M A;  2NVY A;  4IP8 A;  3MAQ A;  1WQF A;  1YNJ D;  3H0G A;  1WQH A;  1NH3 A;  1I6V D;  1I3Q A;  3HKZ A;  3LHP S;  3SJR A;  1K83 A;  1A31 A;  1SMY D;  3K58 A;  1TWF A;  2O5J D;  4D3Y A;  3K59 A;  3KYL A;  3LF9 A;  1DD5 A;  3K5M A;  2B9S B;  1YNN D;  1EH1 A;  4EJ3 A;  2YU9 A;  3K5O A;  4O26 A;  4QCL A;  2PMZ A;  4L8I A;  3GTO A;  4NOM A;  3M4A A;  2NVX A;  4FGU A;  1EJ9 A;  5CQG A;  3GTP A;  4IP9 A;  1TGO A;  1LPQ A;  3GTL A;  4KDD A;  2A68 D;  3K57 A;  4FXD A;  4AHC A;  5JSB B;  1TWH A;  3K5L A;  1WCM A;  4NOL A;  4Q5G A;  2F4Q A;  4GFQ A;  1TL8 A;  4KB2 A;  1A35 A;  3GTQ A;  4KC6 A;  1SEU A;  3GTM A;  3GTJ A;  4JLR C;  2E2H A;  1WQG A;  4QIW A;  4KB4 A;  4D3Z A;  1SC7 A;  1K4T A;  1ZYR D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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