1R5ZA

Crystal structure of subunit c of v-atpase
Total Genus 123
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
123
sequence length
320
structure length
320
Chain Sequence
DDFAYLNARVRVRRGTLLKESFFQEALDLSFADFLRLLSETVYGGELAGQGLPDVDRAVLRTQAKLVGDLPRLVTGEAREAVRLLLLRNDLHNLQALLRAKATGRPFEEVLLLPGTLREEVWRQAYEAQDPAGMAQVLAVPGHPLARALRAVLRETQDLARVEALLAKRFFEDVAKAAKGLDQPALRDYLALEVDAENLRTAFKLQGSGLAPDAFFLKGGRFVDRVRFARLMEGDYAVLDELSGTPFSGLSGVRDLKALERGLRCVLLKEAKKGVQDPLGVGLVLAYVKEREWEAVRLRLLARRAYFGLPRAQVEEEVVC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords V-type ATP synthase subunit C
publication title Crystal structure of a central stalk subunit C and reversible association/dissociation of vacuole-type ATPase.
pubmed doi rcsb
source organism Thermus thermophilus
molecule tags Hydrolase
total genus 123
structure length 320
sequence length 320
chains with identical sequence B, C
ec nomenclature ec 3.6.3.14: Transferred entry: 7.1.2.2.
pdb deposition date 2003-10-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01992 vATP-synt_AC39 ATP synthase (C/AC39) subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.50 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 1r5zA01
1.20.1690.10 Mainly Alpha Up-down Bundle V-type ATP synthase subunit C fold V-type ATP synthase subunit C domain 1r5zA02
1.20.1690.10 Mainly Alpha Up-down Bundle V-type ATP synthase subunit C fold V-type ATP synthase subunit C domain 1r5zA03
1R5ZA 1V9MA
chains in the Genus database with same CATH superfamily
3M4AA 1YNJD 1EJ9A 2Y0SA 3GTMA 1WQHA 1I6VD 2R92A 3IAYA 1R5ZA 3K5NA 4F3EA 3CQZA 4GFQA 4KDDA 2A69D 4Q5VA 3GTKA 1Y1VA 1OHFA 3H0GA 3GTGA 1A35A 3HKZA 4OYDB 4D3ZA 2QQPA 1V9MA 1TWFA 2JA7A 2YU9A 3P9AA 1DD5A 1EH1A 3LHPS 2BE5D 4KAWX 4Q5GA 1TL8A 1NH3A 4O26A 2F4QA 3WVOA 5JSBB 3KYLA 3GTLA 3DU5A 3DU6A 1A36A 2WAQA 2E2HA 3K5OA 3K58A 2NVXA 3GTPA 1RRJA 1HQMD 4NOKA 1I3QA 1YNND 1WCMA 4JLRC 5C9HA 2B9SB 1TWCA 2A6HD 3LF9A 1SEUA 4FXDA 1K83A 4FGUA 1SFOA 3K5MA 4AYBA 1K4TA 3MAQA 4FYDA 2R4GA 2R93A 4EJ3A 1EK8A 4KB2A 2WB1A 4H3TA 2A6ED 1Q8IA 3K59A 1SC7A 1R9TA 4L8IA 1TGOA 5MLC9 4AHCA 2NVYA 1IS1A 4D3YA 2R7ZA 1ISEA 3S6PA 1TWAA 3SJRA 1I50A 4LMOA 1TWHA 3GTQA 2A68D 2JA6A 1TWGA 3GTJA 1IW7D 1R49A 1K4SA 1Y698 4KB4A 1SMYD 1RR8C 1GE9A 2PMZA 2JA5A 5JSNB 4KC6A 4QCLA 2CW0D 2O5JD 2E2IA 1MIUA 2VUMA 1T8IA 4C2MA 1A31A 3K57A 4NOMA 4AN8A 1LPQA 1Y1WA 4IP9A 1ZYRD 5CQGA 1WQGA 3FKIA 3GTOA 4NOLA 4IP8A 3K5LA 1WQFA 2B63A 4QIWA
chains in the Genus database with same CATH topology
3M4AA 1YNJD 1EJ9A 2Y0SA 3GTMA 1WQHA 1I6VD 2R92A 3IAYA 1R5ZA 3K5NA 4F3EA 3CQZA 4GFQA 4KDDA 2A69D 4Q5VA 3GTKA 1Y1VA 3H0GA 3GTGA 1A35A 3HKZA 4OYDB 4D3ZA 1V9MA 1TWFA 2JA7A 2YU9A 3P9AA 1DD5A 1EH1A 3LHPS 2BE5D 4KAWX 4Q5GA 1TL8A 1NH3A 4O26A 2F4QA 3WVOA 5JSBB 3KYLA 3GTLA 3DU5A 3DU6A 1A36A 2WAQA 2E2HA 3K5OA 3K58A 2NVXA 3GTPA 1RRJA 1HQMD 4NOKA 1I3QA 1YNND 1WCMA 4JLRC 5C9HA 2B9SB 1TWCA 2A6HD 3LF9A 1SEUA 4FXDA 1K83A 4FGUA 1SFOA 3K5MA 4AYBA 1K4TA 3MAQA 4FYDA 2R4GA 2R93A 4EJ3A 1EK8A 4KB2A 2WB1A 4H3TA 2A6ED 1Q8IA 3K59A 1SC7A 1R9TA 4L8IA 1TGOA 5MLC9 4AHCA 2NVYA 1IS1A 4D3YA 2R7ZA 1ISEA 1TWAA 3SJRA 1I50A 4LMOA 1TWHA 3GTQA 2A68D 2JA6A 1TWGA 3GTJA 1IW7D 1R49A 1K4SA 1Y698 4KB4A 1SMYD 1RR8C 1GE9A 2PMZA 2JA5A 5JSNB 4KC6A 4QCLA 2CW0D 2O5JD 2E2IA 1MIUA 2VUMA 1T8IA 4C2MA 1A31A 3K57A 4NOMA 4AN8A 1LPQA 1Y1WA 4IP9A 1ZYRD 5CQGA 1WQGA 3FKIA 3GTOA 4NOLA 4IP8A 3K5LA 1WQFA 2B63A 4QIWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R5Z A;  1V9M A; 
#chains in the Genus database with same CATH topology
 3M4A A;  1YNJ D;  1EJ9 A;  2Y0S A;  3GTM A;  1WQH A;  1I6V D;  2R92 A;  3IAY A;  1R5Z A;  3K5N A;  4F3E A;  3CQZ A;  4GFQ A;  4KDD A;  2A69 D;  4Q5V A;  3GTK A;  1Y1V A;  1OHF A;  3H0G A;  3GTG A;  1A35 A;  3HKZ A;  4OYD B;  4D3Z A;  2QQP A;  1V9M A;  1TWF A;  2JA7 A;  2YU9 A;  3P9A A;  1DD5 A;  1EH1 A;  3LHP S;  2BE5 D;  4KAW X;  4Q5G A;  1TL8 A;  1NH3 A;  4O26 A;  2F4Q A;  3WVO A;  5JSB B;  3KYL A;  3GTL A;  3DU5 A;  3DU6 A;  1A36 A;  2WAQ A;  2E2H A;  3K5O A;  3K58 A;  2NVX A;  3GTP A;  1RRJ A;  1HQM D;  4NOK A;  1I3Q A;  1YNN D;  1WCM A;  4JLR C;  5C9H A;  2B9S B;  1TWC A;  2A6H D;  3LF9 A;  1SEU A;  4FXD A;  1K83 A;  4FGU A;  1SFO A;  3K5M A;  4AYB A;  1K4T A;  3MAQ A;  4FYD A;  2R4G A;  2R93 A;  4EJ3 A;  1EK8 A;  4KB2 A;  2WB1 A;  4H3T A;  2A6E D;  1Q8I A;  3K59 A;  1SC7 A;  1R9T A;  4L8I A;  1TGO A;  5MLC 9;  4AHC A;  2NVY A;  1IS1 A;  4D3Y A;  2R7Z A;  1ISE A;  3S6P A;  1TWA A;  3SJR A;  1I50 A;  4LMO A;  1TWH A;  3GTQ A;  2A68 D;  2JA6 A;  1TWG A;  3GTJ A;  1IW7 D;  1R49 A;  1K4S A;  1Y69 8;  4KB4 A;  1SMY D;  1RR8 C;  1GE9 A;  2PMZ A;  2JA5 A;  5JSN B;  4KC6 A;  4QCL A;  2CW0 D;  2O5J D;  2E2I A;  1MIU A;  2VUM A;  1T8I A;  4C2M A;  1A31 A;  3K57 A;  4NOM A;  4AN8 A;  1LPQ A;  1Y1W A;  4IP9 A;  1ZYR D;  5CQG A;  1WQG A;  3FKI A;  3GTO A;  4NOL A;  4IP8 A;  3K5L A;  1WQF A;  2B63 A;  4QIW A; 
#chains in the Genus database with same CATH homology
 3M4A A;  1YNJ D;  1EJ9 A;  2Y0S A;  3GTM A;  1WQH A;  1I6V D;  2R92 A;  3IAY A;  1R5Z A;  3K5N A;  4F3E A;  3CQZ A;  4GFQ A;  4KDD A;  2A69 D;  4Q5V A;  3GTK A;  1Y1V A;  3H0G A;  3GTG A;  1A35 A;  3HKZ A;  4OYD B;  4D3Z A;  1V9M A;  1TWF A;  2JA7 A;  2YU9 A;  3P9A A;  1DD5 A;  1EH1 A;  3LHP S;  2BE5 D;  4KAW X;  4Q5G A;  1TL8 A;  1NH3 A;  4O26 A;  2F4Q A;  3WVO A;  5JSB B;  3KYL A;  3GTL A;  3DU5 A;  3DU6 A;  1A36 A;  2WAQ A;  2E2H A;  3K5O A;  3K58 A;  2NVX A;  3GTP A;  1RRJ A;  1HQM D;  4NOK A;  1I3Q A;  1YNN D;  1WCM A;  4JLR C;  5C9H A;  2B9S B;  1TWC A;  2A6H D;  3LF9 A;  1SEU A;  4FXD A;  1K83 A;  4FGU A;  1SFO A;  3K5M A;  4AYB A;  1K4T A;  3MAQ A;  4FYD A;  2R4G A;  2R93 A;  4EJ3 A;  1EK8 A;  4KB2 A;  2WB1 A;  4H3T A;  2A6E D;  1Q8I A;  3K59 A;  1SC7 A;  1R9T A;  4L8I A;  1TGO A;  5MLC 9;  4AHC A;  2NVY A;  1IS1 A;  4D3Y A;  2R7Z A;  1ISE A;  1TWA A;  3SJR A;  1I50 A;  4LMO A;  1TWH A;  3GTQ A;  2A68 D;  2JA6 A;  1TWG A;  3GTJ A;  1IW7 D;  1R49 A;  1K4S A;  1Y69 8;  4KB4 A;  1SMY D;  1RR8 C;  1GE9 A;  2PMZ A;  2JA5 A;  5JSN B;  4KC6 A;  4QCL A;  2CW0 D;  2O5J D;  2E2I A;  1MIU A;  2VUM A;  1T8I A;  4C2M A;  1A31 A;  3K57 A;  4NOM A;  4AN8 A;  1LPQ A;  1Y1W A;  4IP9 A;  1ZYR D;  5CQG A;  1WQG A;  3FKI A;  3GTO A;  4NOL A;  4IP8 A;  3K5L A;  1WQF A;  2B63 A;  4QIW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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