1V9MA

Crystal structure of the c subunit of v-type atpase from thermus thermophilus
Total Genus 118
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
118
sequence length
319
structure length
312
Chain Sequence
b'FAYLNARVRVRRGTLLKESFFQEALDLSFADFLRLLSETVYGGELAGQGLPDVDRAVLRTQAKLVGDLPRLVTGEAREAVRLLLLRNDLHNLQALLRAKATGRPFEEVLLLPGTLREEVWRQAYEAQDPAGMAQVLAVPGHPLARALRAVLRETQDLARVEALLAKRFFEDVAKPALRDYLALEVDAENLRTAFKLQGSGLAPDAFFLKGGRFVDRVRFARLMEGDYAVLDELSGTPFSGLSGVRDLKALERGLRCVLLKEAKKGVQDPLGVGLVLAYVKEREWEAVRLRLLARRAYFGLPRAQVEEEVVCP'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords V-type ATP synthase subunit C
publication title Structure of the C subunit of V-type ATPase from Thermus thermophilus at 1.85 A resolution.
pubmed doi rcsb
source organism Thermus thermophilus
molecule tags Hydrolase
total genus 118
structure length 312
sequence length 319
ec nomenclature ec 3.6.3.14: Transferred entry: 7.1.2.2.
pdb deposition date 2004-01-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01992 vATP-synt_AC39 ATP synthase (C/AC39) subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.50 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 1v9mA01
1.20.1690.10 Mainly Alpha Up-down Bundle V-type ATP synthase subunit C fold V-type ATP synthase subunit C domain 1v9mA02
1.20.1690.10 Mainly Alpha Up-down Bundle V-type ATP synthase subunit C fold V-type ATP synthase subunit C domain 1v9mA03
1R5ZA 1V9MA
chains in the Genus database with same CATH superfamily
3DU6A 3H0GA 5JSBB 4Q5VA 1TWFA 1I3QA 2E2IA 1IW7D 1YNJD 5JSNB 1Y1WA 1GE9A 2A68D 4AYBA 2YU9A 1WQGA 4FXDA 2CW0D 3CQZA 3GTMA 3KYLA 2A6HD 1Y698 2O5JD 3S6PA 4NOMA 4QCLA 4AN8A 1A36A 2A6ED 1WCMA 1Y1VA 1T8IA 1NH3A 2PMZA 1OHFA 1LPQA 2R4GA 3MAQA 1RR8C 1MIUA 1R9TA 2WAQA 2R92A 2E2HA 1SEUA 3M4AA 4FYDA 4GFQA 4OYDB 1ISEA 2JA5A 3GTPA 1RRJA 4FGUA 4LMOA 3DU5A 3GTKA 1WQHA 3FKIA 4JLRC 3K59A 2NVXA 4H3TA 4IP8A 3K58A 1EJ9A 4QIWA 5C9HA 1YNND 3HKZA 3LF9A 4IP9A 3IAYA 4KDDA 1DD5A 3K5LA 2BE5D 2B9SB 4KAWX 1ZYRD 3K57A 4NOLA 1HQMD 3GTGA 4D3YA 3LHPS 4C2MA 2JA7A 1TWCA 1A35A 1SMYD 3WVOA 1R49A 3SJRA 4KC6A 4KB2A 3K5MA 4NOKA 3GTQA 1IS1A 2F4QA 4O26A 3K5OA 1R5ZA 3GTOA 2Y0SA 4Q5GA 4D3ZA 4AHCA 5CQGA 1TL8A 1TGOA 1A31A 1TWGA 3P9AA 1SFOA 3K5NA 3GTLA 2R7ZA 1Q8IA 1I6VD 2A69D 2QQPA 1K83A 4EJ3A 4KB4A 1SC7A 2NVYA 1WQFA 4L8IA 2VUMA 2R93A 4F3EA 1V9MA 2JA6A 1K4SA 1TWAA 3GTJA 1I50A 5MLC9 2B63A 1EK8A 1EH1A 1K4TA 2WB1A 1TWHA
chains in the Genus database with same CATH topology
3DU6A 3H0GA 5JSBB 4Q5VA 1TWFA 1I3QA 2E2IA 1IW7D 1YNJD 5JSNB 1Y1WA 1GE9A 2A68D 4AYBA 2YU9A 1WQGA 4FXDA 2CW0D 3CQZA 3GTMA 3KYLA 2A6HD 1Y698 2O5JD 4NOMA 4QCLA 4AN8A 1A36A 2A6ED 1WCMA 1Y1VA 1T8IA 1NH3A 2PMZA 1LPQA 2R4GA 3MAQA 1RR8C 1MIUA 1R9TA 2WAQA 2R92A 2E2HA 1SEUA 3M4AA 4FYDA 4GFQA 4OYDB 1ISEA 2JA5A 3GTPA 1RRJA 4FGUA 4LMOA 3DU5A 3GTKA 1WQHA 3FKIA 4JLRC 3K59A 2NVXA 4H3TA 4IP8A 3K58A 1EJ9A 4QIWA 5C9HA 1YNND 3HKZA 3LF9A 4IP9A 3IAYA 4KDDA 1DD5A 3K5LA 2BE5D 2B9SB 4KAWX 1ZYRD 3K57A 4NOLA 1HQMD 3GTGA 4D3YA 3LHPS 4C2MA 2JA7A 1TWCA 1A35A 1SMYD 3WVOA 1R49A 3SJRA 4KC6A 4KB2A 3K5MA 4NOKA 3GTQA 1IS1A 2F4QA 4O26A 3K5OA 1R5ZA 3GTOA 2Y0SA 4Q5GA 4D3ZA 4AHCA 5CQGA 1TL8A 1TGOA 1A31A 1TWGA 3P9AA 1SFOA 3K5NA 3GTLA 2R7ZA 1Q8IA 1I6VD 2A69D 1K83A 4EJ3A 4KB4A 1SC7A 2NVYA 1WQFA 4L8IA 2VUMA 2R93A 4F3EA 1V9MA 2JA6A 1K4SA 1TWAA 3GTJA 1I50A 5MLC9 2B63A 1EK8A 1EH1A 1K4TA 2WB1A 1TWHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R5Z A;  1V9M A; 
#chains in the Genus database with same CATH topology
 3DU6 A;  3H0G A;  5JSB B;  4Q5V A;  1TWF A;  1I3Q A;  2E2I A;  1IW7 D;  1YNJ D;  5JSN B;  1Y1W A;  1GE9 A;  2A68 D;  4AYB A;  2YU9 A;  1WQG A;  4FXD A;  2CW0 D;  3CQZ A;  3GTM A;  3KYL A;  2A6H D;  1Y69 8;  2O5J D;  3S6P A;  4NOM A;  4QCL A;  4AN8 A;  1A36 A;  2A6E D;  1WCM A;  1Y1V A;  1T8I A;  1NH3 A;  2PMZ A;  1OHF A;  1LPQ A;  2R4G A;  3MAQ A;  1RR8 C;  1MIU A;  1R9T A;  2WAQ A;  2R92 A;  2E2H A;  1SEU A;  3M4A A;  4FYD A;  4GFQ A;  4OYD B;  1ISE A;  2JA5 A;  3GTP A;  1RRJ A;  4FGU A;  4LMO A;  3DU5 A;  3GTK A;  1WQH A;  3FKI A;  4JLR C;  3K59 A;  2NVX A;  4H3T A;  4IP8 A;  3K58 A;  1EJ9 A;  4QIW A;  5C9H A;  1YNN D;  3HKZ A;  3LF9 A;  4IP9 A;  3IAY A;  4KDD A;  1DD5 A;  3K5L A;  2BE5 D;  2B9S B;  4KAW X;  1ZYR D;  3K57 A;  4NOL A;  1HQM D;  3GTG A;  4D3Y A;  3LHP S;  4C2M A;  2JA7 A;  1TWC A;  1A35 A;  1SMY D;  3WVO A;  1R49 A;  3SJR A;  4KC6 A;  4KB2 A;  3K5M A;  4NOK A;  3GTQ A;  1IS1 A;  2F4Q A;  4O26 A;  3K5O A;  1R5Z A;  3GTO A;  2Y0S A;  4Q5G A;  4D3Z A;  4AHC A;  5CQG A;  1TL8 A;  1TGO A;  1A31 A;  1TWG A;  3P9A A;  1SFO A;  3K5N A;  3GTL A;  2R7Z A;  1Q8I A;  1I6V D;  2A69 D;  2QQP A;  1K83 A;  4EJ3 A;  4KB4 A;  1SC7 A;  2NVY A;  1WQF A;  4L8I A;  2VUM A;  2R93 A;  4F3E A;  1V9M A;  2JA6 A;  1K4S A;  1TWA A;  3GTJ A;  1I50 A;  5MLC 9;  2B63 A;  1EK8 A;  1EH1 A;  1K4T A;  2WB1 A;  1TWH A; 
#chains in the Genus database with same CATH homology
 3DU6 A;  3H0G A;  5JSB B;  4Q5V A;  1TWF A;  1I3Q A;  2E2I A;  1IW7 D;  1YNJ D;  5JSN B;  1Y1W A;  1GE9 A;  2A68 D;  4AYB A;  2YU9 A;  1WQG A;  4FXD A;  2CW0 D;  3CQZ A;  3GTM A;  3KYL A;  2A6H D;  1Y69 8;  2O5J D;  4NOM A;  4QCL A;  4AN8 A;  1A36 A;  2A6E D;  1WCM A;  1Y1V A;  1T8I A;  1NH3 A;  2PMZ A;  1LPQ A;  2R4G A;  3MAQ A;  1RR8 C;  1MIU A;  1R9T A;  2WAQ A;  2R92 A;  2E2H A;  1SEU A;  3M4A A;  4FYD A;  4GFQ A;  4OYD B;  1ISE A;  2JA5 A;  3GTP A;  1RRJ A;  4FGU A;  4LMO A;  3DU5 A;  3GTK A;  1WQH A;  3FKI A;  4JLR C;  3K59 A;  2NVX A;  4H3T A;  4IP8 A;  3K58 A;  1EJ9 A;  4QIW A;  5C9H A;  1YNN D;  3HKZ A;  3LF9 A;  4IP9 A;  3IAY A;  4KDD A;  1DD5 A;  3K5L A;  2BE5 D;  2B9S B;  4KAW X;  1ZYR D;  3K57 A;  4NOL A;  1HQM D;  3GTG A;  4D3Y A;  3LHP S;  4C2M A;  2JA7 A;  1TWC A;  1A35 A;  1SMY D;  3WVO A;  1R49 A;  3SJR A;  4KC6 A;  4KB2 A;  3K5M A;  4NOK A;  3GTQ A;  1IS1 A;  2F4Q A;  4O26 A;  3K5O A;  1R5Z A;  3GTO A;  2Y0S A;  4Q5G A;  4D3Z A;  4AHC A;  5CQG A;  1TL8 A;  1TGO A;  1A31 A;  1TWG A;  3P9A A;  1SFO A;  3K5N A;  3GTL A;  2R7Z A;  1Q8I A;  1I6V D;  2A69 D;  1K83 A;  4EJ3 A;  4KB4 A;  1SC7 A;  2NVY A;  1WQF A;  4L8I A;  2VUM A;  2R93 A;  4F3E A;  1V9M A;  2JA6 A;  1K4S A;  1TWA A;  3GTJ A;  1I50 A;  5MLC 9;  2B63 A;  1EK8 A;  1EH1 A;  1K4T A;  2WB1 A;  1TWH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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