1V9MA

Crystal structure of the c subunit of v-type atpase from thermus thermophilus
Total Genus 118
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
118
sequence length
319
structure length
312
Chain Sequence
FAYLNARVRVRRGTLLKESFFQEALDLSFADFLRLLSETVYGGELAGQGLPDVDRAVLRTQAKLVGDLPRLVTGEAREAVRLLLLRNDLHNLQALLRAKATGRPFEEVLLLPGTLREEVWRQAYEAQDPAGMAQVLAVPGHPLARALRAVLRETQDLARVEALLAKRFFEDVAKPALRDYLALEVDAENLRTAFKLQGSGLAPDAFFLKGGRFVDRVRFARLMEGDYAVLDELSGTPFSGLSGVRDLKALERGLRCVLLKEAKKGVQDPLGVGLVLAYVKEREWEAVRLRLLARRAYFGLPRAQVEEEVVCP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords V-type ATP synthase subunit C
publication title Structure of the C subunit of V-type ATPase from Thermus thermophilus at 1.85 A resolution.
pubmed doi rcsb
source organism Thermus thermophilus
molecule tags Hydrolase
total genus 118
structure length 312
sequence length 319
ec nomenclature ec 3.6.3.14: Transferred entry: 7.1.2.2.
pdb deposition date 2004-01-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01992 vATP-synt_AC39 ATP synthase (C/AC39) subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.50 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 1v9mA01
1.20.1690.10 Mainly Alpha Up-down Bundle V-type ATP synthase subunit C fold V-type ATP synthase subunit C domain 1v9mA02
1.20.1690.10 Mainly Alpha Up-down Bundle V-type ATP synthase subunit C fold V-type ATP synthase subunit C domain 1v9mA03
1V9MA 1R5ZA
chains in the Genus database with same CATH superfamily
2WAQA 4NOKA 1WQGA 4AN8A 4GFQA 3H0GA 2JA6A 1K83A 4KB2A 3GTJA 1TWHA 4NOMA 1SFOA 4Q5GA 3K5MA 3FKIA 1OHFA 1Y1WA 2VUMA 1TL8A 4KDDA 2R7ZA 5JSNB 3DU6A 4KB4A 1TWCA 1K4TA 1NH3A 2YU9A 2A6HD 1YNJD 1WQFA 1I3QA 3M4AA 2WB1A 2JA5A 3K58A 1A35A 5CQGA 3IAYA 1IW7D 1R9TA 2BE5D 4IP9A 1IS1A 1TGOA 3GTMA 4FYDA 3K59A 1EJ9A 1RRJA 1EK8A 2PMZA 4OYDB 4L8IA 1MIUA 3S6PA 1Y698 1I50A 4C2MA 3MAQA 4AYBA 1LPQA 2R92A 2A6ED 3GTKA 2O5JD 4KC6A 4EJ3A 2F4QA 3GTLA 2CW0D 1RR8C 1TWFA 4D3YA 4NOLA 1SMYD 3CQZA 1V9MA 2NVYA 3K57A 2B9SB 2R4GA 5C9HA 3DU5A 2E2HA 1R5ZA 1ZYRD 1GE9A 1HQMD 4KAWX 1DD5A 4IP8A 3GTPA 3K5NA 5MLC9 2JA7A 4D3ZA 2A68D 1R49A 1T8IA 1TWGA 3P9AA 3WVOA 5JSBB 2R93A 2Y0SA 1TWAA 4FXDA 2A69D 1A36A 4O26A 3K5OA 3GTOA 3LHPS 3LF9A 1K4SA 4QCLA 1SEUA 1A31A 1I6VD 1Q8IA 4LMOA 1YNND 4H3TA 4JLRC 3SJRA 4Q5VA 2QQPA 1SC7A 4F3EA 3K5LA 2E2IA 3GTGA 1Y1VA 1ISEA 1WQHA 3GTQA 1EH1A 1WCMA 2B63A 4FGUA 4AHCA 3HKZA 3KYLA 2NVXA 4QIWA
chains in the Genus database with same CATH topology
2WAQA 4NOKA 1WQGA 4AN8A 4GFQA 3H0GA 2JA6A 1K83A 4KB2A 3GTJA 1TWHA 4NOMA 1SFOA 4Q5GA 3K5MA 3FKIA 1Y1WA 2VUMA 1TL8A 4KDDA 2R7ZA 5JSNB 3DU6A 4KB4A 1TWCA 1K4TA 1NH3A 2YU9A 2A6HD 1YNJD 1WQFA 1I3QA 3M4AA 2WB1A 2JA5A 3K58A 1A35A 5CQGA 3IAYA 1IW7D 1R9TA 2BE5D 4IP9A 1IS1A 1TGOA 3GTMA 4FYDA 3K59A 1EJ9A 1RRJA 1EK8A 2PMZA 4OYDB 4L8IA 1MIUA 1Y698 1I50A 4C2MA 3MAQA 4AYBA 1LPQA 2R92A 2A6ED 3GTKA 2O5JD 4KC6A 4EJ3A 2F4QA 3GTLA 2CW0D 1RR8C 1TWFA 4D3YA 4NOLA 1SMYD 3CQZA 1V9MA 2NVYA 3K57A 2B9SB 2R4GA 5C9HA 3DU5A 2E2HA 1R5ZA 1ZYRD 1GE9A 1HQMD 4KAWX 1DD5A 4IP8A 3GTPA 3K5NA 5MLC9 2JA7A 4D3ZA 2A68D 1R49A 1T8IA 1TWGA 3P9AA 3WVOA 5JSBB 2R93A 2Y0SA 1TWAA 4FXDA 2A69D 1A36A 4O26A 3K5OA 3GTOA 3LHPS 3LF9A 1K4SA 4QCLA 1SEUA 1A31A 1I6VD 1Q8IA 4LMOA 1YNND 4H3TA 4JLRC 3SJRA 4Q5VA 1SC7A 4F3EA 3K5LA 2E2IA 3GTGA 1Y1VA 1ISEA 1WQHA 3GTQA 1EH1A 1WCMA 2B63A 4FGUA 4AHCA 3HKZA 3KYLA 2NVXA 4QIWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1V9M A;  1R5Z A; 
#chains in the Genus database with same CATH topology
 2WAQ A;  4NOK A;  1WQG A;  4AN8 A;  4GFQ A;  3H0G A;  2JA6 A;  1K83 A;  4KB2 A;  3GTJ A;  1TWH A;  4NOM A;  1SFO A;  4Q5G A;  3K5M A;  3FKI A;  1OHF A;  1Y1W A;  2VUM A;  1TL8 A;  4KDD A;  2R7Z A;  5JSN B;  3DU6 A;  4KB4 A;  1TWC A;  1K4T A;  1NH3 A;  2YU9 A;  2A6H D;  1YNJ D;  1WQF A;  1I3Q A;  3M4A A;  2WB1 A;  2JA5 A;  3K58 A;  1A35 A;  5CQG A;  3IAY A;  1IW7 D;  1R9T A;  2BE5 D;  4IP9 A;  1IS1 A;  1TGO A;  3GTM A;  4FYD A;  3K59 A;  1EJ9 A;  1RRJ A;  1EK8 A;  2PMZ A;  4OYD B;  4L8I A;  1MIU A;  3S6P A;  1Y69 8;  1I50 A;  4C2M A;  3MAQ A;  4AYB A;  1LPQ A;  2R92 A;  2A6E D;  3GTK A;  2O5J D;  4KC6 A;  4EJ3 A;  2F4Q A;  3GTL A;  2CW0 D;  1RR8 C;  1TWF A;  4D3Y A;  4NOL A;  1SMY D;  3CQZ A;  1V9M A;  2NVY A;  3K57 A;  2B9S B;  2R4G A;  5C9H A;  3DU5 A;  2E2H A;  1R5Z A;  1ZYR D;  1GE9 A;  1HQM D;  4KAW X;  1DD5 A;  4IP8 A;  3GTP A;  3K5N A;  5MLC 9;  2JA7 A;  4D3Z A;  2A68 D;  1R49 A;  1T8I A;  1TWG A;  3P9A A;  3WVO A;  5JSB B;  2R93 A;  2Y0S A;  1TWA A;  4FXD A;  2A69 D;  1A36 A;  4O26 A;  3K5O A;  3GTO A;  3LHP S;  3LF9 A;  1K4S A;  4QCL A;  1SEU A;  1A31 A;  1I6V D;  1Q8I A;  4LMO A;  1YNN D;  4H3T A;  4JLR C;  3SJR A;  4Q5V A;  2QQP A;  1SC7 A;  4F3E A;  3K5L A;  2E2I A;  3GTG A;  1Y1V A;  1ISE A;  1WQH A;  3GTQ A;  1EH1 A;  1WCM A;  2B63 A;  4FGU A;  4AHC A;  3HKZ A;  3KYL A;  2NVX A;  4QIW A; 
#chains in the Genus database with same CATH homology
 2WAQ A;  4NOK A;  1WQG A;  4AN8 A;  4GFQ A;  3H0G A;  2JA6 A;  1K83 A;  4KB2 A;  3GTJ A;  1TWH A;  4NOM A;  1SFO A;  4Q5G A;  3K5M A;  3FKI A;  1Y1W A;  2VUM A;  1TL8 A;  4KDD A;  2R7Z A;  5JSN B;  3DU6 A;  4KB4 A;  1TWC A;  1K4T A;  1NH3 A;  2YU9 A;  2A6H D;  1YNJ D;  1WQF A;  1I3Q A;  3M4A A;  2WB1 A;  2JA5 A;  3K58 A;  1A35 A;  5CQG A;  3IAY A;  1IW7 D;  1R9T A;  2BE5 D;  4IP9 A;  1IS1 A;  1TGO A;  3GTM A;  4FYD A;  3K59 A;  1EJ9 A;  1RRJ A;  1EK8 A;  2PMZ A;  4OYD B;  4L8I A;  1MIU A;  1Y69 8;  1I50 A;  4C2M A;  3MAQ A;  4AYB A;  1LPQ A;  2R92 A;  2A6E D;  3GTK A;  2O5J D;  4KC6 A;  4EJ3 A;  2F4Q A;  3GTL A;  2CW0 D;  1RR8 C;  1TWF A;  4D3Y A;  4NOL A;  1SMY D;  3CQZ A;  1V9M A;  2NVY A;  3K57 A;  2B9S B;  2R4G A;  5C9H A;  3DU5 A;  2E2H A;  1R5Z A;  1ZYR D;  1GE9 A;  1HQM D;  4KAW X;  1DD5 A;  4IP8 A;  3GTP A;  3K5N A;  5MLC 9;  2JA7 A;  4D3Z A;  2A68 D;  1R49 A;  1T8I A;  1TWG A;  3P9A A;  3WVO A;  5JSB B;  2R93 A;  2Y0S A;  1TWA A;  4FXD A;  2A69 D;  1A36 A;  4O26 A;  3K5O A;  3GTO A;  3LHP S;  3LF9 A;  1K4S A;  4QCL A;  1SEU A;  1A31 A;  1I6V D;  1Q8I A;  4LMO A;  1YNN D;  4H3T A;  4JLR C;  3SJR A;  4Q5V A;  1SC7 A;  4F3E A;  3K5L A;  2E2I A;  3GTG A;  1Y1V A;  1ISE A;  1WQH A;  3GTQ A;  1EH1 A;  1WCM A;  2B63 A;  4FGU A;  4AHC A;  3HKZ A;  3KYL A;  2NVX A;  4QIW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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