1V9MA

Crystal structure of the c subunit of v-type atpase from thermus thermophilus
Total Genus 118
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
118
sequence length
319
structure length
312
Chain Sequence
FAYLNARVRVRRGTLLKESFFQEALDLSFADFLRLLSETVYGGELAGQGLPDVDRAVLRTQAKLVGDLPRLVTGEAREAVRLLLLRNDLHNLQALLRAKATGRPFEEVLLLPGTLREEVWRQAYEAQDPAGMAQVLAVPGHPLARALRAVLRETQDLARVEALLAKRFFEDVAKPALRDYLALEVDAENLRTAFKLQGSGLAPDAFFLKGGRFVDRVRFARLMEGDYAVLDELSGTPFSGLSGVRDLKALERGLRCVLLKEAKKGVQDPLGVGLVLAYVKEREWEAVRLRLLARRAYFGLPRAQVEEEVVCP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords V-type ATP synthase subunit C
publication title Structure of the C subunit of V-type ATPase from Thermus thermophilus at 1.85 A resolution.
pubmed doi rcsb
source organism Thermus thermophilus
total genus 118
structure length 312
sequence length 319
ec nomenclature ec 3.6.3.14: Transferred entry: 7.1.2.2.
pdb deposition date 2004-01-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01992 vATP-synt_AC39 ATP synthase (C/AC39) subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.50 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 1v9mA01
1.20.1690.10 Mainly Alpha Up-down Bundle V-type ATP synthase subunit C fold V-type ATP synthase subunit C domain 1v9mA02
1.20.1690.10 Mainly Alpha Up-down Bundle V-type ATP synthase subunit C fold V-type ATP synthase subunit C domain 1v9mA03
1R5ZA 1V9MA
chains in the Genus database with same CATH superfamily
2B63A 1LPQA 1I50A 3LF9A 1WQHA 2PMZA 2A69D 1K4TA 2A6HD 4FYDA 1R9TA 1Y1VA 1ISEA 4D3ZA 5MLC9 1TL8A 3K58A 2VUMA 1SFOA 2F4QA 4KDDA 1MIUA 1A31A 2CW0D 1WQGA 4AN8A 1Q8IA 1EJ9A 3K57A 2BE5D 2E2IA 1Y1WA 1EH1A 1EK8A 4KC6A 5CQGA 3DU6A 4F3EA 1HQMD 1I6VD 1V9MA 4AHCA 3K5LA 1K4SA 3GTQA 5JSBB 4D3YA 4IP8A 3MAQA 2JA5A 5C9HA 2WAQA 3WVOA 3S6PA 4EJ3A 1TGOA 4KB4A 4GFQA 1TWCA 3DU5A 3K5NA 1K83A 4OYDB 1DD5A 4KB2A 3K5OA 1SEUA 3K5MA 2E2HA 2A6ED 4Q5VA 1ZYRD 4LMOA 2Y0SA 2A68D 4FXDA 1T8IA 4NOKA 5JSNB 3GTMA 2JA6A 1NH3A 3CQZA 4H3TA 2B9SB 1WCMA 2JA7A 1A36A 3GTJA 1R5ZA 3M4AA 1TWFA 2NVXA 1GE9A 3K59A 3GTOA 4JLRC 2YU9A 1A35A 4IP9A 3KYLA 4Q5GA 3GTLA 2NVYA 2WB1A 1OHFA 1RR8C 1TWHA 1RRJA 4L8IA 3IAYA 1I3QA 1WQFA 1SC7A 2R7ZA 1YNND 2R4GA 4NOLA 1TWAA 4QIWA 4C2MA 3FKIA 1IS1A 3H0GA 3HKZA 3GTPA 1SMYD 4KAWX 1R49A 1IW7D 3P9AA 4FGUA 3GTGA 1TWGA 1Y698 1YNJD 4O26A 4QCLA 2R92A 3SJRA 2O5JD 3GTKA 3LHPS 4NOMA 2QQPA 4AYBA 2R93A
chains in the Genus database with same CATH topology
2B63A 1LPQA 1I50A 3LF9A 1WQHA 2PMZA 2A69D 1K4TA 2A6HD 4FYDA 1R9TA 1Y1VA 1ISEA 4D3ZA 5MLC9 1TL8A 3K58A 2VUMA 1SFOA 2F4QA 4KDDA 1MIUA 1A31A 2CW0D 1WQGA 4AN8A 1Q8IA 1EJ9A 3K57A 2BE5D 2E2IA 1Y1WA 1EH1A 1EK8A 4KC6A 5CQGA 3DU6A 4F3EA 1HQMD 1I6VD 1V9MA 4AHCA 3K5LA 1K4SA 3GTQA 5JSBB 4D3YA 4IP8A 3MAQA 2JA5A 5C9HA 2WAQA 3WVOA 4EJ3A 1TGOA 4KB4A 4GFQA 1TWCA 3DU5A 3K5NA 1K83A 4OYDB 1DD5A 4KB2A 3K5OA 1SEUA 3K5MA 2E2HA 2A6ED 4Q5VA 1ZYRD 4LMOA 2Y0SA 2A68D 4FXDA 1T8IA 4NOKA 5JSNB 3GTMA 2JA6A 1NH3A 3CQZA 4H3TA 2B9SB 1WCMA 2JA7A 1A36A 3GTJA 1R5ZA 3M4AA 1TWFA 2NVXA 1GE9A 3K59A 3GTOA 4JLRC 2YU9A 1A35A 4IP9A 3KYLA 4Q5GA 3GTLA 2NVYA 2WB1A 1RR8C 1TWHA 1RRJA 4L8IA 3IAYA 1I3QA 1WQFA 1SC7A 2R7ZA 1YNND 2R4GA 4NOLA 1TWAA 4QIWA 4C2MA 3FKIA 1IS1A 3H0GA 3HKZA 3GTPA 1SMYD 4KAWX 1R49A 1IW7D 3P9AA 4FGUA 3GTGA 1TWGA 1Y698 1YNJD 4O26A 4QCLA 2R92A 3SJRA 2O5JD 3GTKA 3LHPS 4NOMA 4AYBA 2R93A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R5Z A;  1V9M A; 
#chains in the Genus database with same CATH topology
 2B63 A;  1LPQ A;  1I50 A;  3LF9 A;  1WQH A;  2PMZ A;  2A69 D;  1K4T A;  2A6H D;  4FYD A;  1R9T A;  1Y1V A;  1ISE A;  4D3Z A;  5MLC 9;  1TL8 A;  3K58 A;  2VUM A;  1SFO A;  2F4Q A;  4KDD A;  1MIU A;  1A31 A;  2CW0 D;  1WQG A;  4AN8 A;  1Q8I A;  1EJ9 A;  3K57 A;  2BE5 D;  2E2I A;  1Y1W A;  1EH1 A;  1EK8 A;  4KC6 A;  5CQG A;  3DU6 A;  4F3E A;  1HQM D;  1I6V D;  1V9M A;  4AHC A;  3K5L A;  1K4S A;  3GTQ A;  5JSB B;  4D3Y A;  4IP8 A;  3MAQ A;  2JA5 A;  5C9H A;  2WAQ A;  3WVO A;  3S6P A;  4EJ3 A;  1TGO A;  4KB4 A;  4GFQ A;  1TWC A;  3DU5 A;  3K5N A;  1K83 A;  4OYD B;  1DD5 A;  4KB2 A;  3K5O A;  1SEU A;  3K5M A;  2E2H A;  2A6E D;  4Q5V A;  1ZYR D;  4LMO A;  2Y0S A;  2A68 D;  4FXD A;  1T8I A;  4NOK A;  5JSN B;  3GTM A;  2JA6 A;  1NH3 A;  3CQZ A;  4H3T A;  2B9S B;  1WCM A;  2JA7 A;  1A36 A;  3GTJ A;  1R5Z A;  3M4A A;  1TWF A;  2NVX A;  1GE9 A;  3K59 A;  3GTO A;  4JLR C;  2YU9 A;  1A35 A;  4IP9 A;  3KYL A;  4Q5G A;  3GTL A;  2NVY A;  2WB1 A;  1OHF A;  1RR8 C;  1TWH A;  1RRJ A;  4L8I A;  3IAY A;  1I3Q A;  1WQF A;  1SC7 A;  2R7Z A;  1YNN D;  2R4G A;  4NOL A;  1TWA A;  4QIW A;  4C2M A;  3FKI A;  1IS1 A;  3H0G A;  3HKZ A;  3GTP A;  1SMY D;  4KAW X;  1R49 A;  1IW7 D;  3P9A A;  4FGU A;  3GTG A;  1TWG A;  1Y69 8;  1YNJ D;  4O26 A;  4QCL A;  2R92 A;  3SJR A;  2O5J D;  3GTK A;  3LHP S;  4NOM A;  2QQP A;  4AYB A;  2R93 A; 
#chains in the Genus database with same CATH homology
 2B63 A;  1LPQ A;  1I50 A;  3LF9 A;  1WQH A;  2PMZ A;  2A69 D;  1K4T A;  2A6H D;  4FYD A;  1R9T A;  1Y1V A;  1ISE A;  4D3Z A;  5MLC 9;  1TL8 A;  3K58 A;  2VUM A;  1SFO A;  2F4Q A;  4KDD A;  1MIU A;  1A31 A;  2CW0 D;  1WQG A;  4AN8 A;  1Q8I A;  1EJ9 A;  3K57 A;  2BE5 D;  2E2I A;  1Y1W A;  1EH1 A;  1EK8 A;  4KC6 A;  5CQG A;  3DU6 A;  4F3E A;  1HQM D;  1I6V D;  1V9M A;  4AHC A;  3K5L A;  1K4S A;  3GTQ A;  5JSB B;  4D3Y A;  4IP8 A;  3MAQ A;  2JA5 A;  5C9H A;  2WAQ A;  3WVO A;  4EJ3 A;  1TGO A;  4KB4 A;  4GFQ A;  1TWC A;  3DU5 A;  3K5N A;  1K83 A;  4OYD B;  1DD5 A;  4KB2 A;  3K5O A;  1SEU A;  3K5M A;  2E2H A;  2A6E D;  4Q5V A;  1ZYR D;  4LMO A;  2Y0S A;  2A68 D;  4FXD A;  1T8I A;  4NOK A;  5JSN B;  3GTM A;  2JA6 A;  1NH3 A;  3CQZ A;  4H3T A;  2B9S B;  1WCM A;  2JA7 A;  1A36 A;  3GTJ A;  1R5Z A;  3M4A A;  1TWF A;  2NVX A;  1GE9 A;  3K59 A;  3GTO A;  4JLR C;  2YU9 A;  1A35 A;  4IP9 A;  3KYL A;  4Q5G A;  3GTL A;  2NVY A;  2WB1 A;  1RR8 C;  1TWH A;  1RRJ A;  4L8I A;  3IAY A;  1I3Q A;  1WQF A;  1SC7 A;  2R7Z A;  1YNN D;  2R4G A;  4NOL A;  1TWA A;  4QIW A;  4C2M A;  3FKI A;  1IS1 A;  3H0G A;  3HKZ A;  3GTP A;  1SMY D;  4KAW X;  1R49 A;  1IW7 D;  3P9A A;  4FGU A;  3GTG A;  1TWG A;  1Y69 8;  1YNJ D;  4O26 A;  4QCL A;  2R92 A;  3SJR A;  2O5J D;  3GTK A;  3LHP S;  4NOM A;  4AYB A;  2R93 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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