4Q5GA

Crystal structure of mouse serum amyloid a3
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
103
structure length
99
Chain Sequence
RWVQFMKEAGQGSRDMWRAYSDMKKANWKNSDKYFHARGNYDAARRGPGGAWAAKVISDAREAVQKFTGDSRADQFANEWGRSGKDPNHFRPAGLPKRY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Serum amyloid A-3 protein
publication title Biochemical and structural analysis reveals a retinol binding function for serum amyloid A proteins
rcsb
source organism Mus musculus
total genus 41
structure length 99
sequence length 103
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-04-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00277 SAA Serum amyloid A protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.110 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 4q5gA00
4IP9A 4IP8A 4Q5GA
chains in the Genus database with same CATH superfamily
4EJ3A 2A6HD 3K5OA 3H0GA 3LHPS 1SC7A 1GE9A 2JA5A 3K59A 1TL8A 2R93A 4KB4A 1WQGA 4IP9A 4OYDB 2WB1A 2R92A 1K83A 2Y0SA 4LMOA 1ISEA 1Q8IA 1YNJD 1HQMD 3K58A 3WVOA 3LF9A 3GTMA 2YU9A 1V9MA 4C2MA 5CQGA 1EH1A 2JA6A 1Y1VA 2JA7A 2O5JD 2F4QA 1K4TA 1ZYRD 2CW0D 1LPQA 4FXDA 4H3TA 3HKZA 4IP8A 4AN8A 1IS1A 1IW7D 2B9SB 4O26A 1I6VD 4AHCA 4KC6A 1TWFA 3KYLA 4D3ZA 1NH3A 5JSBB 2PMZA 3FKIA 4GFQA 5MLC9 1RRJA 4KAWX 1R9TA 4QCLA 2R7ZA 1SEUA 4FGUA 4KB2A 2R4GA 2NVYA 4NOLA 4L8IA 1TWAA 2NVXA 3GTPA 1I50A 1YNND 1WQFA 3GTGA 4D3YA 1EJ9A 1SFOA 1WCMA 3GTLA 1WQHA 2A69D 2WAQA 3DU6A 2BE5D 3GTQA 1I3QA 1DD5A 1R49A 1SMYD 3DU5A 3M4AA 3GTKA 3K5LA 3SJRA 3GTJA 4FYDA 2A68D 5JSNB 4KDDA 1T8IA 1TGOA 1TWHA 4Q5GA 2E2IA 1RR8C 3GTOA 4JLRC 1MIUA 4NOMA 1A36A 1TWGA 3K5MA 4AYBA 5C9HA 1TWCA 3K57A 1K4SA 2B63A 3K5NA 3CQZA 4Q5VA 1EK8A 1Y698 3MAQA 2E2HA 1A31A 4QIWA 4NOKA 1Y1WA 2VUMA 3IAYA 1A35A 3P9AA 4F3EA 1R5ZA 2A6ED
chains in the Genus database with same CATH topology
4EJ3A 2A6HD 3K5OA 3H0GA 3LHPS 1SC7A 1GE9A 2JA5A 3K59A 1TL8A 2R93A 4KB4A 1WQGA 4IP9A 4OYDB 2WB1A 2R92A 1K83A 2Y0SA 4LMOA 1ISEA 1Q8IA 1YNJD 1HQMD 3K58A 3WVOA 3LF9A 3GTMA 2YU9A 1V9MA 4C2MA 5CQGA 1EH1A 2JA6A 1Y1VA 2JA7A 2O5JD 2F4QA 1K4TA 1ZYRD 2CW0D 1LPQA 4FXDA 4H3TA 3HKZA 4IP8A 4AN8A 1IS1A 1IW7D 2B9SB 4O26A 1I6VD 4AHCA 4KC6A 1TWFA 3KYLA 4D3ZA 1NH3A 5JSBB 2PMZA 3FKIA 4GFQA 5MLC9 1RRJA 4KAWX 1R9TA 4QCLA 2R7ZA 1SEUA 4FGUA 4KB2A 2R4GA 2NVYA 4NOLA 4L8IA 1TWAA 2NVXA 3GTPA 1I50A 1YNND 1WQFA 3GTGA 4D3YA 1EJ9A 1SFOA 1WCMA 3GTLA 1WQHA 2A69D 2WAQA 3DU6A 2BE5D 3GTQA 1I3QA 1DD5A 1R49A 1SMYD 3DU5A 3M4AA 3GTKA 3K5LA 3SJRA 3GTJA 4FYDA 2A68D 5JSNB 4KDDA 1T8IA 1TGOA 1TWHA 4Q5GA 2E2IA 1RR8C 3GTOA 4JLRC 1MIUA 4NOMA 1A36A 1TWGA 3K5MA 4AYBA 5C9HA 1TWCA 3K57A 1K4SA 2B63A 3K5NA 3CQZA 4Q5VA 1EK8A 1Y698 3MAQA 2E2HA 1A31A 4QIWA 4NOKA 1Y1WA 2VUMA 3IAYA 1A35A 3P9AA 4F3EA 1R5ZA 2A6ED
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IP9 A;  4IP8 A;  4Q5G A; 
#chains in the Genus database with same CATH topology
 4EJ3 A;  2A6H D;  3K5O A;  3H0G A;  3LHP S;  1SC7 A;  1GE9 A;  2JA5 A;  3K59 A;  1TL8 A;  2R93 A;  4KB4 A;  1WQG A;  4IP9 A;  4OYD B;  2WB1 A;  2R92 A;  1K83 A;  2Y0S A;  4LMO A;  1ISE A;  1Q8I A;  1YNJ D;  1HQM D;  3K58 A;  3WVO A;  3LF9 A;  3GTM A;  2YU9 A;  1V9M A;  4C2M A;  5CQG A;  1EH1 A;  2JA6 A;  1Y1V A;  2JA7 A;  2O5J D;  2F4Q A;  1K4T A;  1ZYR D;  2CW0 D;  1LPQ A;  4FXD A;  4H3T A;  3HKZ A;  4IP8 A;  4AN8 A;  1IS1 A;  1IW7 D;  2B9S B;  4O26 A;  1I6V D;  4AHC A;  4KC6 A;  1TWF A;  3KYL A;  4D3Z A;  1NH3 A;  5JSB B;  2PMZ A;  3FKI A;  4GFQ A;  5MLC 9;  1RRJ A;  4KAW X;  1R9T A;  4QCL A;  2R7Z A;  1SEU A;  4FGU A;  4KB2 A;  2R4G A;  2NVY A;  4NOL A;  4L8I A;  1TWA A;  2NVX A;  3GTP A;  1I50 A;  1YNN D;  1WQF A;  3GTG A;  4D3Y A;  1EJ9 A;  1SFO A;  1WCM A;  3GTL A;  1WQH A;  2A69 D;  2WAQ A;  3DU6 A;  2BE5 D;  3GTQ A;  1I3Q A;  1DD5 A;  1R49 A;  1SMY D;  3DU5 A;  3M4A A;  3GTK A;  3K5L A;  3SJR A;  3GTJ A;  4FYD A;  2A68 D;  5JSN B;  4KDD A;  1T8I A;  1TGO A;  1TWH A;  4Q5G A;  2E2I A;  1RR8 C;  3GTO A;  4JLR C;  1MIU A;  4NOM A;  1A36 A;  1TWG A;  3K5M A;  4AYB A;  5C9H A;  1TWC A;  3K57 A;  1K4S A;  2B63 A;  3K5N A;  3CQZ A;  4Q5V A;  1EK8 A;  1Y69 8;  3MAQ A;  2E2H A;  1A31 A;  4QIW A;  4NOK A;  1Y1W A;  2VUM A;  3IAY A;  1A35 A;  3P9A A;  4F3E A;  1R5Z A;  2A6E D; 
#chains in the Genus database with same CATH homology
 4EJ3 A;  2A6H D;  3K5O A;  3H0G A;  3LHP S;  1SC7 A;  1GE9 A;  2JA5 A;  3K59 A;  1TL8 A;  2R93 A;  4KB4 A;  1WQG A;  4IP9 A;  4OYD B;  2WB1 A;  2R92 A;  1K83 A;  2Y0S A;  4LMO A;  1ISE A;  1Q8I A;  1YNJ D;  1HQM D;  3K58 A;  3WVO A;  3LF9 A;  3GTM A;  2YU9 A;  1V9M A;  4C2M A;  5CQG A;  1EH1 A;  2JA6 A;  1Y1V A;  2JA7 A;  2O5J D;  2F4Q A;  1K4T A;  1ZYR D;  2CW0 D;  1LPQ A;  4FXD A;  4H3T A;  3HKZ A;  4IP8 A;  4AN8 A;  1IS1 A;  1IW7 D;  2B9S B;  4O26 A;  1I6V D;  4AHC A;  4KC6 A;  1TWF A;  3KYL A;  4D3Z A;  1NH3 A;  5JSB B;  2PMZ A;  3FKI A;  4GFQ A;  5MLC 9;  1RRJ A;  4KAW X;  1R9T A;  4QCL A;  2R7Z A;  1SEU A;  4FGU A;  4KB2 A;  2R4G A;  2NVY A;  4NOL A;  4L8I A;  1TWA A;  2NVX A;  3GTP A;  1I50 A;  1YNN D;  1WQF A;  3GTG A;  4D3Y A;  1EJ9 A;  1SFO A;  1WCM A;  3GTL A;  1WQH A;  2A69 D;  2WAQ A;  3DU6 A;  2BE5 D;  3GTQ A;  1I3Q A;  1DD5 A;  1R49 A;  1SMY D;  3DU5 A;  3M4A A;  3GTK A;  3K5L A;  3SJR A;  3GTJ A;  4FYD A;  2A68 D;  5JSN B;  4KDD A;  1T8I A;  1TGO A;  1TWH A;  4Q5G A;  2E2I A;  1RR8 C;  3GTO A;  4JLR C;  1MIU A;  4NOM A;  1A36 A;  1TWG A;  3K5M A;  4AYB A;  5C9H A;  1TWC A;  3K57 A;  1K4S A;  2B63 A;  3K5N A;  3CQZ A;  4Q5V A;  1EK8 A;  1Y69 8;  3MAQ A;  2E2H A;  1A31 A;  4QIW A;  4NOK A;  1Y1W A;  2VUM A;  3IAY A;  1A35 A;  3P9A A;  4F3E A;  1R5Z A;  2A6E D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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