2F4QA

Crystal structure of deinococcus radiodurans topoisomerase ib
Total Genus 98
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
98
sequence length
336
structure length
309
Chain Sequence
PSRTELLAEEYLRREPQKFRLARIARLAVPPAYQDVYVSPDAENELQAFGRDAAGRLQYRYHPDFVQAGALKKWQRLTRFAGALPTLKVATTADLRASGLPPRKVMALMTRLLHVARFRVTYGLSTLRQRHVVVDGNTVTFRFKGKHGVSQHKATSDRTLAANMQKLLDLPGPWLFQTVDAGGGERRRIHSTELNAYLREVIGPFTAKDFRTWGGTLLAAEYLAQQGTESSERQAKKVLVDCVKFVADDLGNTPAVTRGSYICPVIFDRYLDGKVLDDYEPRTERQEAELEGLTRSEGALKRMLESERT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
molecule keywords type I topoisomerase, putative
publication title Crystal structure of a bacterial type IB DNA topoisomerase reveals a preassembled active site in the absence of DNA.
pubmed doi rcsb
source organism Deinococcus radiodurans
total genus 98
structure length 309
sequence length 336
ec nomenclature
pdb deposition date 2005-11-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01028 Topoisom_I Eukaryotic DNA topoisomerase I, catalytic core
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.120 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 2f4qA02
3.30.66.10 Alpha Beta 2-Layer Sandwich Viral Topoisomerase I DNA topoisomerase I domain 2f4qA01
3.90.15.10 Alpha Beta Alpha-Beta Complex Topoisomerase I; Chain A, domain 3 Topoisomerase I; Chain A, domain 3 2f4qA03
2F4QA 1RR8C 1RRJA 2H7FX 2B9SA 3M4AA 1LPQA 1R49A 1A35A 3IGCA 1NH3A 1K4TA 1T8IA 2H7GX 1A31A 1A36A 1TL8A 1EJ9A 1K4SA 1SC7A 1SEUA 1VCCA 1A41A
chains in the Genus database with same CATH superfamily
2A68D 1I50A 4Q5GA 1SMYD 1I3QA 2E2HA 2A69D 2H7FX 2JA7A 4AHCA 1TWFA 3GTGA 3GTMA 1TGOA 1GE9A 3M4AA 4KB2A 4NOKA 2B9SB 4LMOA 1A35A 2R92A 1NH3A 1K4TA 2PMZA 3WVOA 1YNJD 1WQFA 3K5OA 4JLRC 2BE5D 2VUMA 1A31A 2YU9A 2A6ED 1SFOA 2F4QA 1R9TA 1RRJA 4KC6A 3DU5A 1IS1A 4FGUA 3IAYA 4AN8A 2B9SA 5JSBB 3K5MA 5CQGA 4C2MA 3GTKA 4L8IA 3DU6A 1EH1A 4FYDA 4KDDA 3H0GA 2H7GX 1TWGA 2B63A 5MLC9 4O26A 1HQMD 1EJ9A 1K4SA 4NOMA 5C9HA 3GTQA 4GFQA 3GTLA 3LF9A 4D3YA 3K5LA 1IW7D 3HKZA 3LHPS 4H3TA 4NOLA 5JSNB 1WQHA 4QCLA 1TWAA 4QIWA 1K83A 3GTOA 1Q8IA 4KB4A 2R4GA 1DD5A 1LPQA 1Y698 3IGCA 4FXDA 2O5JD 1TWCA 4EJ3A 2R7ZA 2NVYA 1T8IA 4IP9A 3K57A 2R93A 1A36A 4OYDB 3FKIA 3CQZA 3MAQA 3K58A 2NVXA 2E2IA 1SEUA 1I6VD 3GTPA 1Y1VA 2Y0SA 1VCCA 1WCMA 1YNND 4KAWX 3P9AA 1RR8C 3GTJA 4D3ZA 4Q5VA 1TWHA 1ISEA 1MIUA 1ZYRD 2WAQA 3SJRA 2JA5A 2A6HD 1WQGA 1R49A 4AYBA 4IP8A 3KYLA 1V9MA 1A41A 2JA6A 3K59A 3K5NA 1Y1WA 1TL8A 4F3EA 1SC7A 2WB1A 1R5ZA 2CW0D 1EK8A
chains in the Genus database with same CATH topology
2A68D 1I50A 4Q5GA 1SMYD 1I3QA 2E2HA 2A69D 2H7FX 2JA7A 4AHCA 1TWFA 3GTGA 3GTMA 1TGOA 1GE9A 3M4AA 4KB2A 4NOKA 2B9SB 4LMOA 1A35A 2R92A 1NH3A 1K4TA 2PMZA 3WVOA 1YNJD 1WQFA 3K5OA 4JLRC 2BE5D 2VUMA 1A31A 2YU9A 2A6ED 1SFOA 2F4QA 1R9TA 1RRJA 4KC6A 3DU5A 1IS1A 4FGUA 3IAYA 4AN8A 2B9SA 5JSBB 3K5MA 5CQGA 4C2MA 3GTKA 4L8IA 3DU6A 1EH1A 4FYDA 4KDDA 3H0GA 2H7GX 1TWGA 2B63A 5MLC9 4O26A 1HQMD 1EJ9A 1K4SA 4NOMA 5C9HA 3GTQA 4GFQA 3GTLA 3LF9A 4D3YA 3K5LA 1IW7D 3HKZA 3LHPS 4H3TA 4NOLA 5JSNB 1WQHA 4QCLA 1TWAA 4QIWA 1K83A 3GTOA 1Q8IA 4KB4A 2R4GA 1DD5A 1LPQA 1Y698 3IGCA 4FXDA 2O5JD 1TWCA 4EJ3A 2R7ZA 2NVYA 1T8IA 4IP9A 3K57A 2R93A 1A36A 4OYDB 3FKIA 3CQZA 3MAQA 3K58A 2NVXA 2E2IA 1SEUA 1I6VD 3GTPA 1Y1VA 2Y0SA 1VCCA 1WCMA 1YNND 4KAWX 3P9AA 1RR8C 3GTJA 4D3ZA 4Q5VA 1TWHA 1ISEA 1MIUA 1ZYRD 2WAQA 3SJRA 2JA5A 2A6HD 1WQGA 1R49A 4AYBA 4IP8A 3KYLA 1V9MA 1A41A 2JA6A 3K59A 3K5NA 1Y1WA 1TL8A 4F3EA 1SC7A 2WB1A 1R5ZA 2CW0D 1EK8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2F4Q A;  1RR8 C;  1RRJ A;  2H7F X;  2B9S A;  3M4A A;  1LPQ A;  1R49 A;  1A35 A;  3IGC A;  1NH3 A;  1K4T A;  1T8I A;  2H7G X;  1A31 A;  1A36 A;  1TL8 A;  1EJ9 A;  1K4S A;  1SC7 A;  1SEU A;  1VCC A;  1A41 A; 
#chains in the Genus database with same CATH topology
 2A68 D;  1I50 A;  4Q5G A;  1SMY D;  1I3Q A;  2E2H A;  2A69 D;  2H7F X;  2JA7 A;  4AHC A;  1TWF A;  3GTG A;  3GTM A;  1TGO A;  1GE9 A;  3M4A A;  4KB2 A;  4NOK A;  2B9S B;  4LMO A;  1A35 A;  2R92 A;  1NH3 A;  1K4T A;  2PMZ A;  3WVO A;  1YNJ D;  1WQF A;  3K5O A;  4JLR C;  2BE5 D;  2VUM A;  1A31 A;  2YU9 A;  2A6E D;  1SFO A;  2F4Q A;  1R9T A;  1RRJ A;  4KC6 A;  3DU5 A;  1IS1 A;  4FGU A;  3IAY A;  4AN8 A;  2B9S A;  5JSB B;  3K5M A;  5CQG A;  4C2M A;  3GTK A;  4L8I A;  3DU6 A;  1EH1 A;  4FYD A;  4KDD A;  3H0G A;  2H7G X;  1TWG A;  2B63 A;  5MLC 9;  4O26 A;  1HQM D;  1EJ9 A;  1K4S A;  4NOM A;  5C9H A;  3GTQ A;  4GFQ A;  3GTL A;  3LF9 A;  4D3Y A;  3K5L A;  1IW7 D;  3HKZ A;  3LHP S;  4H3T A;  4NOL A;  5JSN B;  1WQH A;  4QCL A;  1TWA A;  4QIW A;  1K83 A;  3GTO A;  1Q8I A;  4KB4 A;  2R4G A;  1DD5 A;  1LPQ A;  1Y69 8;  3IGC A;  4FXD A;  2O5J D;  1TWC A;  4EJ3 A;  2R7Z A;  2NVY A;  1T8I A;  4IP9 A;  3K57 A;  2R93 A;  1A36 A;  4OYD B;  3FKI A;  3CQZ A;  3MAQ A;  3K58 A;  2NVX A;  2E2I A;  1SEU A;  1I6V D;  3GTP A;  1Y1V A;  2Y0S A;  1VCC A;  1WCM A;  1YNN D;  4KAW X;  3P9A A;  1RR8 C;  3GTJ A;  4D3Z A;  4Q5V A;  1TWH A;  1ISE A;  1MIU A;  1ZYR D;  2WAQ A;  3SJR A;  2JA5 A;  2A6H D;  1WQG A;  1R49 A;  4AYB A;  4IP8 A;  3KYL A;  1V9M A;  1A41 A;  2JA6 A;  3K59 A;  3K5N A;  1Y1W A;  1TL8 A;  4F3E A;  1SC7 A;  2WB1 A;  1R5Z A;  2CW0 D;  1EK8 A; 
#chains in the Genus database with same CATH homology
 2A68 D;  1I50 A;  4Q5G A;  1SMY D;  1I3Q A;  2E2H A;  2A69 D;  2H7F X;  2JA7 A;  4AHC A;  1TWF A;  3GTG A;  3GTM A;  1TGO A;  1GE9 A;  3M4A A;  4KB2 A;  4NOK A;  2B9S B;  4LMO A;  1A35 A;  2R92 A;  1NH3 A;  1K4T A;  2PMZ A;  3WVO A;  1YNJ D;  1WQF A;  3K5O A;  4JLR C;  2BE5 D;  2VUM A;  1A31 A;  2YU9 A;  2A6E D;  1SFO A;  2F4Q A;  1R9T A;  1RRJ A;  4KC6 A;  3DU5 A;  1IS1 A;  4FGU A;  3IAY A;  4AN8 A;  2B9S A;  5JSB B;  3K5M A;  5CQG A;  4C2M A;  3GTK A;  4L8I A;  3DU6 A;  1EH1 A;  4FYD A;  4KDD A;  3H0G A;  2H7G X;  1TWG A;  2B63 A;  5MLC 9;  4O26 A;  1HQM D;  1EJ9 A;  1K4S A;  4NOM A;  5C9H A;  3GTQ A;  4GFQ A;  3GTL A;  3LF9 A;  4D3Y A;  3K5L A;  1IW7 D;  3HKZ A;  3LHP S;  4H3T A;  4NOL A;  5JSN B;  1WQH A;  4QCL A;  1TWA A;  4QIW A;  1K83 A;  3GTO A;  1Q8I A;  4KB4 A;  2R4G A;  1DD5 A;  1LPQ A;  1Y69 8;  3IGC A;  4FXD A;  2O5J D;  1TWC A;  4EJ3 A;  2R7Z A;  2NVY A;  1T8I A;  4IP9 A;  3K57 A;  2R93 A;  1A36 A;  4OYD B;  3FKI A;  3CQZ A;  3MAQ A;  3K58 A;  2NVX A;  2E2I A;  1SEU A;  1I6V D;  3GTP A;  1Y1V A;  2Y0S A;  1VCC A;  1WCM A;  1YNN D;  4KAW X;  3P9A A;  1RR8 C;  3GTJ A;  4D3Z A;  4Q5V A;  1TWH A;  1ISE A;  1MIU A;  1ZYR D;  2WAQ A;  3SJR A;  2JA5 A;  2A6H D;  1WQG A;  1R49 A;  4AYB A;  4IP8 A;  3KYL A;  1V9M A;  1A41 A;  2JA6 A;  3K59 A;  3K5N A;  1Y1W A;  1TL8 A;  4F3E A;  1SC7 A;  2WB1 A;  1R5Z A;  2CW0 D;  1EK8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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