4IP8A

Structure of human serum amyloid a1
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
105
structure length
105
Chain Sequence
MRSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNYDAAKRGPGGVWAAEAISDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNHFRPAGLPEKY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
source organism Homo sapiens
publication title Structural mechanism of serum amyloid A-mediated inflammatory amyloidosis.
pubmed doi rcsb
molecule keywords Serum amyloid A-1 protein
total genus 47
structure length 105
sequence length 105
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2013-01-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00277 SAA Serum amyloid A protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.110 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 4ip8A00
4IP9A 4IP8A 4Q5GA
chains in the Genus database with same CATH superfamily
1R9TA 4Q5VA 2NVXA 1A35A 3FKIA 2E2IA 1Y1VA 2B9SB 1WQGA 2WAQA 4KB4A 1MIUA 1SMYD 3CQZA 1K4SA 4QCLA 4NOKA 3GTOA 2A68D 2JA7A 3DU6A 3DU5A 4F3EA 3GTLA 2E2HA 3SJRA 2Y0SA 2A6HD 5CQGA 3K5LA 1I50A 4GFQA 1SC7A 4KAWX 3GTJA 1WQFA 5C9HA 1RRJA 4H3TA 4AYBA 4KB2A 1RR8C 3GTQA 4FYDA 4Q5GA 1TWGA 1ISEA 1V9MA 1YNJD 4KC6A 2A69D 1Y698 3KYLA 3WVOA 3LHPS 1I3QA 1A36A 2B63A 4D3YA 3LF9A 3H0GA 1SFOA 1EJ9A 2CW0D 3GTKA 4O26A 1R5ZA 1TL8A 1HQMD 1IS1A 4QIWA 1Q8IA 2F4QA 1Y1WA 1T8IA 1SEUA 4EJ3A 2BE5D 4L8IA 4FXDA 1TWAA 1DD5A 1I6VD 2JA5A 3K58A 5MLC9 2VUMA 4NOLA 4KDDA 3HKZA 1TWCA 1GE9A 4NOMA 4AHCA 4IP8A 3IAYA 1TWFA 1IW7D 3GTMA 3P9AA 1WQHA 2PMZA 2A6ED 2WB1A 2R92A 4D3ZA 1TWHA 2R7ZA 1ZYRD 4FGUA 2NVYA 1EK8A 4LMOA 3K5NA 1YNND 1TGOA 5JSNB 1LPQA 2JA6A 1R49A 5JSBB 3MAQA 4AN8A 3K59A 3GTGA 3K5MA 4JLRC 2R4GA 2YU9A 2R93A 3GTPA 1WCMA 3K57A 1NH3A 1K4TA 1EH1A 1A31A 3M4AA 2O5JD 4IP9A 4C2MA 3K5OA 1K83A 4OYDB
chains in the Genus database with same CATH topology
1R9TA 4Q5VA 2NVXA 1A35A 3FKIA 2E2IA 1Y1VA 2B9SB 1WQGA 2WAQA 4KB4A 1MIUA 1SMYD 3CQZA 1K4SA 4QCLA 4NOKA 3GTOA 2A68D 2JA7A 3DU6A 3DU5A 4F3EA 3GTLA 2E2HA 3SJRA 2Y0SA 2A6HD 5CQGA 3K5LA 1I50A 4GFQA 1SC7A 4KAWX 3GTJA 1WQFA 5C9HA 1RRJA 4H3TA 4AYBA 4KB2A 1RR8C 3GTQA 4FYDA 4Q5GA 1TWGA 1ISEA 1V9MA 1YNJD 4KC6A 2A69D 1Y698 3KYLA 3WVOA 3LHPS 1I3QA 1A36A 2B63A 4D3YA 3LF9A 3H0GA 1SFOA 1EJ9A 2CW0D 3GTKA 4O26A 1R5ZA 1TL8A 1HQMD 1IS1A 4QIWA 1Q8IA 2F4QA 1Y1WA 1T8IA 1SEUA 4EJ3A 2BE5D 4L8IA 4FXDA 1TWAA 1DD5A 1I6VD 2JA5A 3K58A 5MLC9 2VUMA 4NOLA 4KDDA 3HKZA 1TWCA 1GE9A 4NOMA 4AHCA 4IP8A 3IAYA 1TWFA 1IW7D 3GTMA 3P9AA 1WQHA 2PMZA 2A6ED 2WB1A 2R92A 4D3ZA 1TWHA 2R7ZA 1ZYRD 4FGUA 2NVYA 1EK8A 4LMOA 3K5NA 1YNND 1TGOA 5JSNB 1LPQA 2JA6A 1R49A 5JSBB 3MAQA 4AN8A 3K59A 3GTGA 3K5MA 4JLRC 2R4GA 2YU9A 2R93A 3GTPA 1WCMA 3K57A 1NH3A 1K4TA 1EH1A 1A31A 3M4AA 2O5JD 4IP9A 4C2MA 3K5OA 1K83A 4OYDB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IP9 A;  4IP8 A;  4Q5G A; 
#chains in the Genus database with same CATH topology
 1R9T A;  4Q5V A;  2NVX A;  1A35 A;  3FKI A;  2E2I A;  1Y1V A;  2B9S B;  1WQG A;  2WAQ A;  4KB4 A;  1MIU A;  1SMY D;  3CQZ A;  1K4S A;  4QCL A;  4NOK A;  3GTO A;  2A68 D;  2JA7 A;  3DU6 A;  3DU5 A;  4F3E A;  3GTL A;  2E2H A;  3SJR A;  2Y0S A;  2A6H D;  5CQG A;  3K5L A;  1I50 A;  4GFQ A;  1SC7 A;  4KAW X;  3GTJ A;  1WQF A;  5C9H A;  1RRJ A;  4H3T A;  4AYB A;  4KB2 A;  1RR8 C;  3GTQ A;  4FYD A;  4Q5G A;  1TWG A;  1ISE A;  1V9M A;  1YNJ D;  4KC6 A;  2A69 D;  1Y69 8;  3KYL A;  3WVO A;  3LHP S;  1I3Q A;  1A36 A;  2B63 A;  4D3Y A;  3LF9 A;  3H0G A;  1SFO A;  1EJ9 A;  2CW0 D;  3GTK A;  4O26 A;  1R5Z A;  1TL8 A;  1HQM D;  1IS1 A;  4QIW A;  1Q8I A;  2F4Q A;  1Y1W A;  1T8I A;  1SEU A;  4EJ3 A;  2BE5 D;  4L8I A;  4FXD A;  1TWA A;  1DD5 A;  1I6V D;  2JA5 A;  3K58 A;  5MLC 9;  2VUM A;  4NOL A;  4KDD A;  3HKZ A;  1TWC A;  1GE9 A;  4NOM A;  4AHC A;  4IP8 A;  3IAY A;  1TWF A;  1IW7 D;  3GTM A;  3P9A A;  1WQH A;  2PMZ A;  2A6E D;  2WB1 A;  2R92 A;  4D3Z A;  1TWH A;  2R7Z A;  1ZYR D;  4FGU A;  2NVY A;  1EK8 A;  4LMO A;  3K5N A;  1YNN D;  1TGO A;  5JSN B;  1LPQ A;  2JA6 A;  1R49 A;  5JSB B;  3MAQ A;  4AN8 A;  3K59 A;  3GTG A;  3K5M A;  4JLR C;  2R4G A;  2YU9 A;  2R93 A;  3GTP A;  1WCM A;  3K57 A;  1NH3 A;  1K4T A;  1EH1 A;  1A31 A;  3M4A A;  2O5J D;  4IP9 A;  4C2M A;  3K5O A;  1K83 A;  4OYD B; 
#chains in the Genus database with same CATH homology
 1R9T A;  4Q5V A;  2NVX A;  1A35 A;  3FKI A;  2E2I A;  1Y1V A;  2B9S B;  1WQG A;  2WAQ A;  4KB4 A;  1MIU A;  1SMY D;  3CQZ A;  1K4S A;  4QCL A;  4NOK A;  3GTO A;  2A68 D;  2JA7 A;  3DU6 A;  3DU5 A;  4F3E A;  3GTL A;  2E2H A;  3SJR A;  2Y0S A;  2A6H D;  5CQG A;  3K5L A;  1I50 A;  4GFQ A;  1SC7 A;  4KAW X;  3GTJ A;  1WQF A;  5C9H A;  1RRJ A;  4H3T A;  4AYB A;  4KB2 A;  1RR8 C;  3GTQ A;  4FYD A;  4Q5G A;  1TWG A;  1ISE A;  1V9M A;  1YNJ D;  4KC6 A;  2A69 D;  1Y69 8;  3KYL A;  3WVO A;  3LHP S;  1I3Q A;  1A36 A;  2B63 A;  4D3Y A;  3LF9 A;  3H0G A;  1SFO A;  1EJ9 A;  2CW0 D;  3GTK A;  4O26 A;  1R5Z A;  1TL8 A;  1HQM D;  1IS1 A;  4QIW A;  1Q8I A;  2F4Q A;  1Y1W A;  1T8I A;  1SEU A;  4EJ3 A;  2BE5 D;  4L8I A;  4FXD A;  1TWA A;  1DD5 A;  1I6V D;  2JA5 A;  3K58 A;  5MLC 9;  2VUM A;  4NOL A;  4KDD A;  3HKZ A;  1TWC A;  1GE9 A;  4NOM A;  4AHC A;  4IP8 A;  3IAY A;  1TWF A;  1IW7 D;  3GTM A;  3P9A A;  1WQH A;  2PMZ A;  2A6E D;  2WB1 A;  2R92 A;  4D3Z A;  1TWH A;  2R7Z A;  1ZYR D;  4FGU A;  2NVY A;  1EK8 A;  4LMO A;  3K5N A;  1YNN D;  1TGO A;  5JSN B;  1LPQ A;  2JA6 A;  1R49 A;  5JSB B;  3MAQ A;  4AN8 A;  3K59 A;  3GTG A;  3K5M A;  4JLR C;  2R4G A;  2YU9 A;  2R93 A;  3GTP A;  1WCM A;  3K57 A;  1NH3 A;  1K4T A;  1EH1 A;  1A31 A;  3M4A A;  2O5J D;  4IP9 A;  4C2M A;  3K5O A;  1K83 A;  4OYD B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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