4H3TA

Crystal structure of crispr-associated protein cse1 from acidimicrobium ferrooxidans
Total Genus 173
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
173
sequence length
530
structure length
517
Chain Sequence
b'EPEMHFDLSSEPWLPVRFRDGRRSEVSLRDIFVLAHTIVGFDVDFPTLEPALLRLVLALAYRILRGPKDDAEWGRLWEADRFSEDAIDDYFARWRHRFDLFSKEFPFFQVADLEPAGKGGVKTANSLVAYAPSTELALSPAEAARWLVERHAFGSASDKTGAKGNPKVKGGKDTPAIGYLAWIGFVAPVGQTLRETLLLNLVPWQYRNLIRGGEDDVPAWERDPLGPTRVMRAPDGVCDLFTWQGRRIRLFPERRGDAIVVPRVLICAGDEVDRRAARDVDPHVGWRMESRRGAEVSYVPLRARPGQQVWRGLSSVLALGAEEQRAGVLSFVEGLQSRGIALVSLLVTSAKFGNMSTTLDDLAYDRLDTPLAVLNQEDPAAATVAIDAVTFAAHAAQALGYVAEARYLSYDLSFHEESKRHRVPEGKAALAKAARSALAEEIYGRLDAPYRHFLTGLANIDDLERPRAEWAALVEAVARDLASRELAQLAPAQAFAGVAGEDRFRRMLARARNEFSP'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords CRISPR-associated protein, Cse1 family
publication title Crystal structure of CRISPR-associated protein Cse1 from Acidimicrobium ferrooxidans
rcsb
source organism Acidimicrobium ferrooxidans
molecule tags Cell invasion
total genus 173
structure length 517
sequence length 530
ec nomenclature
pdb deposition date 2012-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09481 CRISPR_Cse1 CRISPR-associated protein Cse1 (CRISPR_cse1)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.100 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 4h3tA02
4EJ3A 3WVOA 4AN8A 4F3EA 4H3TA
chains in the Genus database with same CATH superfamily
1TGOA 4IP8A 2JA7A 1WQFA 4FYDA 4AHCA 1I3QA 1ISEA 1EH1A 2WAQA 3K5MA 1TWGA 3LHPS 2A6HD 1TL8A 4O26A 1R49A 3P9AA 1WQGA 3GTLA 2F4QA 2NVXA 3WVOA 2O5JD 1K83A 1GE9A 4LMOA 2YU9A 3GTOA 1Y1WA 1TWHA 4OYDB 2NVYA 5JSBB 1SEUA 1YNJD 2VUMA 1SC7A 1YNND 2R7ZA 4AN8A 1R5ZA 4KDDA 2B9SB 5MLC9 1Q8IA 1Y1VA 4F3EA 4NOMA 3K59A 1ZYRD 4GFQA 5JSNB 4C2MA 4L8IA 1RRJA 3H0GA 2E2IA 1TWFA 1Y698 1T8IA 3M4AA 3K5LA 2JA6A 4NOKA 1RR8C 1V9MA 2WB1A 1EK8A 4Q5VA 1IW7D 1MIUA 1WCMA 1A35A 3K58A 3KYLA 1R9TA 3DU6A 3HKZA 2R93A 4FXDA 1TWCA 3MAQA 1HQMD 2A69D 4H3TA 2JA5A 2PMZA 1EJ9A 4QIWA 3CQZA 1I50A 3GTPA 3DU5A 2CW0D 4KAWX 3IAYA 1NH3A 4JLRC 1A31A 4KB2A 1A36A 1K4TA 5C9HA 4EJ3A 4KC6A 2R4GA 1LPQA 2R92A 4D3YA 3GTGA 3GTQA 4IP9A 2A68D 4FGUA 3K5NA 1K4SA 3LF9A 5CQGA 1TWAA 4Q5GA 3K57A 2B63A 1I6VD 1SMYD 1IS1A 4KB4A 4D3ZA 2A6ED 3GTMA 2E2HA 1DD5A 2BE5D 2Y0SA 4NOLA 3GTJA 3FKIA 4QCLA 3K5OA 4AYBA 1WQHA 3GTKA 3SJRA 1SFOA
chains in the Genus database with same CATH topology
1TGOA 4IP8A 2JA7A 1WQFA 4FYDA 4AHCA 1I3QA 1ISEA 1EH1A 2WAQA 3K5MA 1TWGA 3LHPS 2A6HD 1TL8A 4O26A 1R49A 3P9AA 1WQGA 3GTLA 2F4QA 2NVXA 3WVOA 2O5JD 1K83A 1GE9A 4LMOA 2YU9A 3GTOA 1Y1WA 1TWHA 4OYDB 2NVYA 5JSBB 1SEUA 1YNJD 2VUMA 1SC7A 1YNND 2R7ZA 4AN8A 1R5ZA 4KDDA 2B9SB 5MLC9 1Q8IA 1Y1VA 4F3EA 4NOMA 3K59A 1ZYRD 4GFQA 5JSNB 4C2MA 4L8IA 1RRJA 3H0GA 2E2IA 1TWFA 1Y698 1T8IA 3M4AA 3K5LA 2JA6A 4NOKA 1RR8C 1V9MA 2WB1A 1EK8A 4Q5VA 1IW7D 1MIUA 1WCMA 1A35A 3K58A 3KYLA 1R9TA 3DU6A 3HKZA 2R93A 4FXDA 1TWCA 3MAQA 1HQMD 2A69D 4H3TA 2JA5A 2PMZA 1EJ9A 4QIWA 3CQZA 1I50A 3GTPA 3DU5A 2CW0D 4KAWX 3IAYA 1NH3A 4JLRC 1A31A 4KB2A 1A36A 1K4TA 5C9HA 4EJ3A 4KC6A 2R4GA 1LPQA 2R92A 4D3YA 3GTGA 3GTQA 4IP9A 2A68D 4FGUA 3K5NA 1K4SA 3LF9A 5CQGA 1TWAA 4Q5GA 3K57A 2B63A 1I6VD 1SMYD 1IS1A 4KB4A 4D3ZA 2A6ED 3GTMA 2E2HA 1DD5A 2BE5D 2Y0SA 4NOLA 3GTJA 3FKIA 4QCLA 3K5OA 4AYBA 1WQHA 3GTKA 3SJRA 1SFOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EJ3 A;  3WVO A;  4AN8 A;  4F3E A;  4H3T A; 
#chains in the Genus database with same CATH topology
 1TGO A;  4IP8 A;  2JA7 A;  1WQF A;  4FYD A;  4AHC A;  1I3Q A;  1ISE A;  1EH1 A;  2WAQ A;  3K5M A;  1TWG A;  3LHP S;  2A6H D;  1TL8 A;  4O26 A;  1R49 A;  3P9A A;  1WQG A;  3GTL A;  2F4Q A;  2NVX A;  3WVO A;  2O5J D;  1K83 A;  1GE9 A;  4LMO A;  2YU9 A;  3GTO A;  1Y1W A;  1TWH A;  4OYD B;  2NVY A;  5JSB B;  1SEU A;  1YNJ D;  2VUM A;  1SC7 A;  1YNN D;  2R7Z A;  4AN8 A;  1R5Z A;  4KDD A;  2B9S B;  5MLC 9;  1Q8I A;  1Y1V A;  4F3E A;  4NOM A;  3K59 A;  1ZYR D;  4GFQ A;  5JSN B;  4C2M A;  4L8I A;  1RRJ A;  3H0G A;  2E2I A;  1TWF A;  1Y69 8;  1T8I A;  3M4A A;  3K5L A;  2JA6 A;  4NOK A;  1RR8 C;  1V9M A;  2WB1 A;  1EK8 A;  4Q5V A;  1IW7 D;  1MIU A;  1WCM A;  1A35 A;  3K58 A;  3KYL A;  1R9T A;  3DU6 A;  3HKZ A;  2R93 A;  4FXD A;  1TWC A;  3MAQ A;  1HQM D;  2A69 D;  4H3T A;  2JA5 A;  2PMZ A;  1EJ9 A;  4QIW A;  3CQZ A;  1I50 A;  3GTP A;  3DU5 A;  2CW0 D;  4KAW X;  3IAY A;  1NH3 A;  4JLR C;  1A31 A;  4KB2 A;  1A36 A;  1K4T A;  5C9H A;  4EJ3 A;  4KC6 A;  2R4G A;  1LPQ A;  2R92 A;  4D3Y A;  3GTG A;  3GTQ A;  4IP9 A;  2A68 D;  4FGU A;  3K5N A;  1K4S A;  3LF9 A;  5CQG A;  1TWA A;  4Q5G A;  3K57 A;  2B63 A;  1I6V D;  1SMY D;  1IS1 A;  4KB4 A;  4D3Z A;  2A6E D;  3GTM A;  2E2H A;  1DD5 A;  2BE5 D;  2Y0S A;  4NOL A;  3GTJ A;  3FKI A;  4QCL A;  3K5O A;  4AYB A;  1WQH A;  3GTK A;  3SJR A;  1SFO A; 
#chains in the Genus database with same CATH homology
 1TGO A;  4IP8 A;  2JA7 A;  1WQF A;  4FYD A;  4AHC A;  1I3Q A;  1ISE A;  1EH1 A;  2WAQ A;  3K5M A;  1TWG A;  3LHP S;  2A6H D;  1TL8 A;  4O26 A;  1R49 A;  3P9A A;  1WQG A;  3GTL A;  2F4Q A;  2NVX A;  3WVO A;  2O5J D;  1K83 A;  1GE9 A;  4LMO A;  2YU9 A;  3GTO A;  1Y1W A;  1TWH A;  4OYD B;  2NVY A;  5JSB B;  1SEU A;  1YNJ D;  2VUM A;  1SC7 A;  1YNN D;  2R7Z A;  4AN8 A;  1R5Z A;  4KDD A;  2B9S B;  5MLC 9;  1Q8I A;  1Y1V A;  4F3E A;  4NOM A;  3K59 A;  1ZYR D;  4GFQ A;  5JSN B;  4C2M A;  4L8I A;  1RRJ A;  3H0G A;  2E2I A;  1TWF A;  1Y69 8;  1T8I A;  3M4A A;  3K5L A;  2JA6 A;  4NOK A;  1RR8 C;  1V9M A;  2WB1 A;  1EK8 A;  4Q5V A;  1IW7 D;  1MIU A;  1WCM A;  1A35 A;  3K58 A;  3KYL A;  1R9T A;  3DU6 A;  3HKZ A;  2R93 A;  4FXD A;  1TWC A;  3MAQ A;  1HQM D;  2A69 D;  4H3T A;  2JA5 A;  2PMZ A;  1EJ9 A;  4QIW A;  3CQZ A;  1I50 A;  3GTP A;  3DU5 A;  2CW0 D;  4KAW X;  3IAY A;  1NH3 A;  4JLR C;  1A31 A;  4KB2 A;  1A36 A;  1K4T A;  5C9H A;  4EJ3 A;  4KC6 A;  2R4G A;  1LPQ A;  2R92 A;  4D3Y A;  3GTG A;  3GTQ A;  4IP9 A;  2A68 D;  4FGU A;  3K5N A;  1K4S A;  3LF9 A;  5CQG A;  1TWA A;  4Q5G A;  3K57 A;  2B63 A;  1I6V D;  1SMY D;  1IS1 A;  4KB4 A;  4D3Z A;  2A6E D;  3GTM A;  2E2H A;  1DD5 A;  2BE5 D;  2Y0S A;  4NOL A;  3GTJ A;  3FKI A;  4QCL A;  3K5O A;  4AYB A;  1WQH A;  3GTK A;  3SJR A;  1SFO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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