4H3TA

Crystal structure of crispr-associated protein cse1 from acidimicrobium ferrooxidans
Total Genus 173
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
173
sequence length
530
structure length
517
Chain Sequence
EPEMHFDLSSEPWLPVRFRDGRRSEVSLRDIFVLAHTIVGFDVDFPTLEPALLRLVLALAYRILRGPKDDAEWGRLWEADRFSEDAIDDYFARWRHRFDLFSKEFPFFQVADLEPAGKGGVKTANSLVAYAPSTELALSPAEAARWLVERHAFGSASDKTGAKGNPKVKGGKDTPAIGYLAWIGFVAPVGQTLRETLLLNLVPWQYRNLIRGGEDDVPAWERDPLGPTRVMRAPDGVCDLFTWQGRRIRLFPERRGDAIVVPRVLICAGDEVDRRAARDVDPHVGWRMESRRGAEVSYVPLRARPGQQVWRGLSSVLALGAEEQRAGVLSFVEGLQSRGIALVSLLVTSAKFGNMSTTLDDLAYDRLDTPLAVLNQEDPAAATVAIDAVTFAAHAAQALGYVAEARYLSYDLSFHEESKRHRVPEGKAALAKAARSALAEEIYGRLDAPYRHFLTGLANIDDLERPRAEWAALVEAVARDLASRELAQLAPAQAFAGVAGEDRFRRMLARARNEFSP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of CRISPR-associated protein Cse1 from Acidimicrobium ferrooxidans
rcsb
source organism Acidimicrobium ferrooxidans
molecule tags Cell invasion
molecule keywords CRISPR-associated protein, Cse1 family
total genus 173
structure length 517
sequence length 530
ec nomenclature
pdb deposition date 2012-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09481 CRISPR_Cse1 CRISPR-associated protein Cse1 (CRISPR_cse1)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.100 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 4h3tA02
4F3EA 3WVOA 4H3TA 4EJ3A 4AN8A
chains in the Genus database with same CATH superfamily
1A36A 4NOLA 4Q5GA 1TWCA 1I6VD 2YU9A 4KB4A 3SJRA 1WQHA 1Y1VA 1TWAA 1YNJD 2F4QA 4GFQA 1EK8A 1R9TA 1WQGA 4KB2A 4IP8A 3K5NA 1TWFA 2WAQA 3K5OA 1IW7D 1K83A 3GTQA 1WQFA 2CW0D 2B63A 1A31A 1A35A 4EJ3A 3FKIA 4KAWX 2JA5A 1HQMD 3K5MA 3GTOA 1MIUA 4LMOA 2JA7A 1DD5A 3K57A 3LHPS 4JLRC 2E2HA 3DU6A 1K4SA 4NOKA 4AHCA 4QIWA 2VUMA 2NVXA 2A68D 1K4TA 2Y0SA 4IP9A 3LF9A 4C2MA 1Y698 5JSBB 1ZYRD 4D3ZA 3CQZA 3M4AA 2A69D 3K5LA 1SEUA 1WCMA 4AYBA 1SMYD 5JSNB 1RRJA 4NOMA 1NH3A 3IAYA 3GTGA 1R49A 2R4GA 2R7ZA 2R92A 2R93A 4FGUA 5MLC9 4OYDB 2A6ED 2PMZA 1EJ9A 2BE5D 3MAQA 1TWGA 3GTKA 2WB1A 4AN8A 2NVYA 3K58A 1TL8A 3P9AA 4FXDA 2O5JD 1EH1A 1SFOA 1IS1A 1RR8C 2JA6A 1LPQA 3GTPA 2E2IA 1I50A 3KYLA 3GTJA 4Q5VA 2B9SB 2A6HD 1Q8IA 1SC7A 1GE9A 1TGOA 1I3QA 4D3YA 3H0GA 3GTMA 1YNND 1T8IA 5C9HA 4FYDA 4QCLA 3K59A 5CQGA 1R5ZA 4KDDA 3DU5A 1Y1WA 3HKZA 3WVOA 4KC6A 1ISEA 4H3TA 4L8IA 4F3EA 4O26A 1V9MA 1TWHA 3GTLA
chains in the Genus database with same CATH topology
1A36A 4NOLA 4Q5GA 1TWCA 1I6VD 2YU9A 4KB4A 3SJRA 1WQHA 1Y1VA 1TWAA 1YNJD 2F4QA 4GFQA 1EK8A 1R9TA 1WQGA 4KB2A 4IP8A 3K5NA 1TWFA 2WAQA 3K5OA 1IW7D 1K83A 3GTQA 1WQFA 2CW0D 2B63A 1A31A 1A35A 4EJ3A 3FKIA 4KAWX 2JA5A 1HQMD 3K5MA 3GTOA 1MIUA 4LMOA 2JA7A 1DD5A 3K57A 3LHPS 4JLRC 2E2HA 3DU6A 1K4SA 4NOKA 4AHCA 4QIWA 2VUMA 2NVXA 2A68D 1K4TA 2Y0SA 4IP9A 3LF9A 4C2MA 1Y698 5JSBB 1ZYRD 4D3ZA 3CQZA 3M4AA 2A69D 3K5LA 1SEUA 1WCMA 4AYBA 1SMYD 5JSNB 1RRJA 4NOMA 1NH3A 3IAYA 3GTGA 1R49A 2R4GA 2R7ZA 2R92A 2R93A 4FGUA 5MLC9 4OYDB 2A6ED 2PMZA 1EJ9A 2BE5D 3MAQA 1TWGA 3GTKA 2WB1A 4AN8A 2NVYA 3K58A 1TL8A 3P9AA 4FXDA 2O5JD 1EH1A 1SFOA 1IS1A 1RR8C 2JA6A 1LPQA 3GTPA 2E2IA 1I50A 3KYLA 3GTJA 4Q5VA 2B9SB 2A6HD 1Q8IA 1SC7A 1GE9A 1TGOA 1I3QA 4D3YA 3H0GA 3GTMA 1YNND 1T8IA 5C9HA 4FYDA 4QCLA 3K59A 5CQGA 1R5ZA 4KDDA 3DU5A 1Y1WA 3HKZA 3WVOA 4KC6A 1ISEA 4H3TA 4L8IA 4F3EA 4O26A 1V9MA 1TWHA 3GTLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4F3E A;  3WVO A;  4H3T A;  4EJ3 A;  4AN8 A; 
#chains in the Genus database with same CATH topology
 1A36 A;  4NOL A;  4Q5G A;  1TWC A;  1I6V D;  2YU9 A;  4KB4 A;  3SJR A;  1WQH A;  1Y1V A;  1TWA A;  1YNJ D;  2F4Q A;  4GFQ A;  1EK8 A;  1R9T A;  1WQG A;  4KB2 A;  4IP8 A;  3K5N A;  1TWF A;  2WAQ A;  3K5O A;  1IW7 D;  1K83 A;  3GTQ A;  1WQF A;  2CW0 D;  2B63 A;  1A31 A;  1A35 A;  4EJ3 A;  3FKI A;  4KAW X;  2JA5 A;  1HQM D;  3K5M A;  3GTO A;  1MIU A;  4LMO A;  2JA7 A;  1DD5 A;  3K57 A;  3LHP S;  4JLR C;  2E2H A;  3DU6 A;  1K4S A;  4NOK A;  4AHC A;  4QIW A;  2VUM A;  2NVX A;  2A68 D;  1K4T A;  2Y0S A;  4IP9 A;  3LF9 A;  4C2M A;  1Y69 8;  5JSB B;  1ZYR D;  4D3Z A;  3CQZ A;  3M4A A;  2A69 D;  3K5L A;  1SEU A;  1WCM A;  4AYB A;  1SMY D;  5JSN B;  1RRJ A;  4NOM A;  1NH3 A;  3IAY A;  3GTG A;  1R49 A;  2R4G A;  2R7Z A;  2R92 A;  2R93 A;  4FGU A;  5MLC 9;  4OYD B;  2A6E D;  2PMZ A;  1EJ9 A;  2BE5 D;  3MAQ A;  1TWG A;  3GTK A;  2WB1 A;  4AN8 A;  2NVY A;  3K58 A;  1TL8 A;  3P9A A;  4FXD A;  2O5J D;  1EH1 A;  1SFO A;  1IS1 A;  1RR8 C;  2JA6 A;  1LPQ A;  3GTP A;  2E2I A;  1I50 A;  3KYL A;  3GTJ A;  4Q5V A;  2B9S B;  2A6H D;  1Q8I A;  1SC7 A;  1GE9 A;  1TGO A;  1I3Q A;  4D3Y A;  3H0G A;  3GTM A;  1YNN D;  1T8I A;  5C9H A;  4FYD A;  4QCL A;  3K59 A;  5CQG A;  1R5Z A;  4KDD A;  3DU5 A;  1Y1W A;  3HKZ A;  3WVO A;  4KC6 A;  1ISE A;  4H3T A;  4L8I A;  4F3E A;  4O26 A;  1V9M A;  1TWH A;  3GTL A; 
#chains in the Genus database with same CATH homology
 1A36 A;  4NOL A;  4Q5G A;  1TWC A;  1I6V D;  2YU9 A;  4KB4 A;  3SJR A;  1WQH A;  1Y1V A;  1TWA A;  1YNJ D;  2F4Q A;  4GFQ A;  1EK8 A;  1R9T A;  1WQG A;  4KB2 A;  4IP8 A;  3K5N A;  1TWF A;  2WAQ A;  3K5O A;  1IW7 D;  1K83 A;  3GTQ A;  1WQF A;  2CW0 D;  2B63 A;  1A31 A;  1A35 A;  4EJ3 A;  3FKI A;  4KAW X;  2JA5 A;  1HQM D;  3K5M A;  3GTO A;  1MIU A;  4LMO A;  2JA7 A;  1DD5 A;  3K57 A;  3LHP S;  4JLR C;  2E2H A;  3DU6 A;  1K4S A;  4NOK A;  4AHC A;  4QIW A;  2VUM A;  2NVX A;  2A68 D;  1K4T A;  2Y0S A;  4IP9 A;  3LF9 A;  4C2M A;  1Y69 8;  5JSB B;  1ZYR D;  4D3Z A;  3CQZ A;  3M4A A;  2A69 D;  3K5L A;  1SEU A;  1WCM A;  4AYB A;  1SMY D;  5JSN B;  1RRJ A;  4NOM A;  1NH3 A;  3IAY A;  3GTG A;  1R49 A;  2R4G A;  2R7Z A;  2R92 A;  2R93 A;  4FGU A;  5MLC 9;  4OYD B;  2A6E D;  2PMZ A;  1EJ9 A;  2BE5 D;  3MAQ A;  1TWG A;  3GTK A;  2WB1 A;  4AN8 A;  2NVY A;  3K58 A;  1TL8 A;  3P9A A;  4FXD A;  2O5J D;  1EH1 A;  1SFO A;  1IS1 A;  1RR8 C;  2JA6 A;  1LPQ A;  3GTP A;  2E2I A;  1I50 A;  3KYL A;  3GTJ A;  4Q5V A;  2B9S B;  2A6H D;  1Q8I A;  1SC7 A;  1GE9 A;  1TGO A;  1I3Q A;  4D3Y A;  3H0G A;  3GTM A;  1YNN D;  1T8I A;  5C9H A;  4FYD A;  4QCL A;  3K59 A;  5CQG A;  1R5Z A;  4KDD A;  3DU5 A;  1Y1W A;  3HKZ A;  3WVO A;  4KC6 A;  1ISE A;  4H3T A;  4L8I A;  4F3E A;  4O26 A;  1V9M A;  1TWH A;  3GTL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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