4H3TA

Crystal structure of crispr-associated protein cse1 from acidimicrobium ferrooxidans
Total Genus 173
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
173
sequence length
530
structure length
517
Chain Sequence
EPEMHFDLSSEPWLPVRFRDGRRSEVSLRDIFVLAHTIVGFDVDFPTLEPALLRLVLALAYRILRGPKDDAEWGRLWEADRFSEDAIDDYFARWRHRFDLFSKEFPFFQVADLEPAGKGGVKTANSLVAYAPSTELALSPAEAARWLVERHAFGSASDKTGAKGNPKVKGGKDTPAIGYLAWIGFVAPVGQTLRETLLLNLVPWQYRNLIRGGEDDVPAWERDPLGPTRVMRAPDGVCDLFTWQGRRIRLFPERRGDAIVVPRVLICAGDEVDRRAARDVDPHVGWRMESRRGAEVSYVPLRARPGQQVWRGLSSVLALGAEEQRAGVLSFVEGLQSRGIALVSLLVTSAKFGNMSTTLDDLAYDRLDTPLAVLNQEDPAAATVAIDAVTFAAHAAQALGYVAEARYLSYDLSFHEESKRHRVPEGKAALAKAARSALAEEIYGRLDAPYRHFLTGLANIDDLERPRAEWAALVEAVARDLASRELAQLAPAQAFAGVAGEDRFRRMLARARNEFSP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords CRISPR-associated protein, Cse1 family
publication title Crystal structure of CRISPR-associated protein Cse1 from Acidimicrobium ferrooxidans
rcsb
source organism Acidimicrobium ferrooxidans
molecule tags Cell invasion
total genus 173
structure length 517
sequence length 530
ec nomenclature
pdb deposition date 2012-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09481 CRISPR_Cse1 CRISPR-associated protein Cse1 (CRISPR_cse1)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.100 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 4h3tA02
4AN8A 4F3EA 4H3TA 3WVOA 4EJ3A
chains in the Genus database with same CATH superfamily
3K5LA 3MAQA 4KDDA 2A68D 1RRJA 3DU5A 2F4QA 1WQFA 2BE5D 4D3YA 3GTJA 2CW0D 3GTQA 1TWGA 1TWFA 1TWHA 1YNJD 3LF9A 4EJ3A 2B63A 5JSNB 1MIUA 1T8IA 3K5MA 1Y698 1R9TA 1V9MA 3M4AA 1WQGA 4GFQA 3GTGA 4NOKA 2PMZA 1ISEA 2VUMA 3CQZA 1ZYRD 3K57A 2NVXA 1EK8A 4NOLA 4KB4A 4AYBA 1TWAA 2E2IA 5C9HA 4QIWA 4Q5VA 1I50A 4O26A 4D3ZA 1A36A 1TL8A 1A35A 1Y1VA 4FYDA 2JA5A 1TGOA 3GTKA 3DU6A 4KC6A 4H3TA 3GTOA 2E2HA 2A6HD 1SEUA 1TWCA 3K5NA 5CQGA 4IP8A 2YU9A 3GTPA 2R4GA 4AHCA 1YNND 3GTMA 4NOMA 1K4SA 4C2MA 4L8IA 4F3EA 4FXDA 1I3QA 3KYLA 3K59A 3K58A 4AN8A 1WQHA 1R5ZA 2R7ZA 3IAYA 4JLRC 2B9SB 4QCLA 1A31A 1K83A 3P9AA 5MLC9 3SJRA 1DD5A 2R92A 1LPQA 2JA6A 1HQMD 2WB1A 1IW7D 4LMOA 1SMYD 3K5OA 1IS1A 4IP9A 1I6VD 4OYDB 3LHPS 4Q5GA 2A6ED 1RR8C 4KAWX 2R93A 1Y1WA 1NH3A 2JA7A 1EH1A 3HKZA 2O5JD 4FGUA 1Q8IA 2Y0SA 2WAQA 1K4TA 5JSBB 1WCMA 1SC7A 3FKIA 2NVYA 1R49A 3H0GA 1EJ9A 1SFOA 3WVOA 3GTLA 1GE9A 2A69D 4KB2A
chains in the Genus database with same CATH topology
3K5LA 3MAQA 4KDDA 2A68D 1RRJA 3DU5A 2F4QA 1WQFA 2BE5D 4D3YA 3GTJA 2CW0D 3GTQA 1TWGA 1TWFA 1TWHA 1YNJD 3LF9A 4EJ3A 2B63A 5JSNB 1MIUA 1T8IA 3K5MA 1Y698 1R9TA 1V9MA 3M4AA 1WQGA 4GFQA 3GTGA 4NOKA 2PMZA 1ISEA 2VUMA 3CQZA 1ZYRD 3K57A 2NVXA 1EK8A 4NOLA 4KB4A 4AYBA 1TWAA 2E2IA 5C9HA 4QIWA 4Q5VA 1I50A 4O26A 4D3ZA 1A36A 1TL8A 1A35A 1Y1VA 4FYDA 2JA5A 1TGOA 3GTKA 3DU6A 4KC6A 4H3TA 3GTOA 2E2HA 2A6HD 1SEUA 1TWCA 3K5NA 5CQGA 4IP8A 2YU9A 3GTPA 2R4GA 4AHCA 1YNND 3GTMA 4NOMA 1K4SA 4C2MA 4L8IA 4F3EA 4FXDA 1I3QA 3KYLA 3K59A 3K58A 4AN8A 1WQHA 1R5ZA 2R7ZA 3IAYA 4JLRC 2B9SB 4QCLA 1A31A 1K83A 3P9AA 5MLC9 3SJRA 1DD5A 2R92A 1LPQA 2JA6A 1HQMD 2WB1A 1IW7D 4LMOA 1SMYD 3K5OA 1IS1A 4IP9A 1I6VD 4OYDB 3LHPS 4Q5GA 2A6ED 1RR8C 4KAWX 2R93A 1Y1WA 1NH3A 2JA7A 1EH1A 3HKZA 2O5JD 4FGUA 1Q8IA 2Y0SA 2WAQA 1K4TA 5JSBB 1WCMA 1SC7A 3FKIA 2NVYA 1R49A 3H0GA 1EJ9A 1SFOA 3WVOA 3GTLA 1GE9A 2A69D 4KB2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AN8 A;  4F3E A;  4H3T A;  3WVO A;  4EJ3 A; 
#chains in the Genus database with same CATH topology
 3K5L A;  3MAQ A;  4KDD A;  2A68 D;  1RRJ A;  3DU5 A;  2F4Q A;  1WQF A;  2BE5 D;  4D3Y A;  3GTJ A;  2CW0 D;  3GTQ A;  1TWG A;  1TWF A;  1TWH A;  1YNJ D;  3LF9 A;  4EJ3 A;  2B63 A;  5JSN B;  1MIU A;  1T8I A;  3K5M A;  1Y69 8;  1R9T A;  1V9M A;  3M4A A;  1WQG A;  4GFQ A;  3GTG A;  4NOK A;  2PMZ A;  1ISE A;  2VUM A;  3CQZ A;  1ZYR D;  3K57 A;  2NVX A;  1EK8 A;  4NOL A;  4KB4 A;  4AYB A;  1TWA A;  2E2I A;  5C9H A;  4QIW A;  4Q5V A;  1I50 A;  4O26 A;  4D3Z A;  1A36 A;  1TL8 A;  1A35 A;  1Y1V A;  4FYD A;  2JA5 A;  1TGO A;  3GTK A;  3DU6 A;  4KC6 A;  4H3T A;  3GTO A;  2E2H A;  2A6H D;  1SEU A;  1TWC A;  3K5N A;  5CQG A;  4IP8 A;  2YU9 A;  3GTP A;  2R4G A;  4AHC A;  1YNN D;  3GTM A;  4NOM A;  1K4S A;  4C2M A;  4L8I A;  4F3E A;  4FXD A;  1I3Q A;  3KYL A;  3K59 A;  3K58 A;  4AN8 A;  1WQH A;  1R5Z A;  2R7Z A;  3IAY A;  4JLR C;  2B9S B;  4QCL A;  1A31 A;  1K83 A;  3P9A A;  5MLC 9;  3SJR A;  1DD5 A;  2R92 A;  1LPQ A;  2JA6 A;  1HQM D;  2WB1 A;  1IW7 D;  4LMO A;  1SMY D;  3K5O A;  1IS1 A;  4IP9 A;  1I6V D;  4OYD B;  3LHP S;  4Q5G A;  2A6E D;  1RR8 C;  4KAW X;  2R93 A;  1Y1W A;  1NH3 A;  2JA7 A;  1EH1 A;  3HKZ A;  2O5J D;  4FGU A;  1Q8I A;  2Y0S A;  2WAQ A;  1K4T A;  5JSB B;  1WCM A;  1SC7 A;  3FKI A;  2NVY A;  1R49 A;  3H0G A;  1EJ9 A;  1SFO A;  3WVO A;  3GTL A;  1GE9 A;  2A69 D;  4KB2 A; 
#chains in the Genus database with same CATH homology
 3K5L A;  3MAQ A;  4KDD A;  2A68 D;  1RRJ A;  3DU5 A;  2F4Q A;  1WQF A;  2BE5 D;  4D3Y A;  3GTJ A;  2CW0 D;  3GTQ A;  1TWG A;  1TWF A;  1TWH A;  1YNJ D;  3LF9 A;  4EJ3 A;  2B63 A;  5JSN B;  1MIU A;  1T8I A;  3K5M A;  1Y69 8;  1R9T A;  1V9M A;  3M4A A;  1WQG A;  4GFQ A;  3GTG A;  4NOK A;  2PMZ A;  1ISE A;  2VUM A;  3CQZ A;  1ZYR D;  3K57 A;  2NVX A;  1EK8 A;  4NOL A;  4KB4 A;  4AYB A;  1TWA A;  2E2I A;  5C9H A;  4QIW A;  4Q5V A;  1I50 A;  4O26 A;  4D3Z A;  1A36 A;  1TL8 A;  1A35 A;  1Y1V A;  4FYD A;  2JA5 A;  1TGO A;  3GTK A;  3DU6 A;  4KC6 A;  4H3T A;  3GTO A;  2E2H A;  2A6H D;  1SEU A;  1TWC A;  3K5N A;  5CQG A;  4IP8 A;  2YU9 A;  3GTP A;  2R4G A;  4AHC A;  1YNN D;  3GTM A;  4NOM A;  1K4S A;  4C2M A;  4L8I A;  4F3E A;  4FXD A;  1I3Q A;  3KYL A;  3K59 A;  3K58 A;  4AN8 A;  1WQH A;  1R5Z A;  2R7Z A;  3IAY A;  4JLR C;  2B9S B;  4QCL A;  1A31 A;  1K83 A;  3P9A A;  5MLC 9;  3SJR A;  1DD5 A;  2R92 A;  1LPQ A;  2JA6 A;  1HQM D;  2WB1 A;  1IW7 D;  4LMO A;  1SMY D;  3K5O A;  1IS1 A;  4IP9 A;  1I6V D;  4OYD B;  3LHP S;  4Q5G A;  2A6E D;  1RR8 C;  4KAW X;  2R93 A;  1Y1W A;  1NH3 A;  2JA7 A;  1EH1 A;  3HKZ A;  2O5J D;  4FGU A;  1Q8I A;  2Y0S A;  2WAQ A;  1K4T A;  5JSB B;  1WCM A;  1SC7 A;  3FKI A;  2NVY A;  1R49 A;  3H0G A;  1EJ9 A;  1SFO A;  3WVO A;  3GTL A;  1GE9 A;  2A69 D;  4KB2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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