4AN8A

Structure of thermus thermophilus casa (cse1)
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
493
structure length
468
Chain Sequence
LEKFNLIDEPWIPVLKGGRVVEVGIGEALLRAHEFARIETPSPLEEAVLHRLLLAVLHRALSGPRCPEDVLDWWRKGGFPQDPIRDYLNRFRDRFFLFHPEAPFLQVADLPEENPLPWSKLLPELANLPKATYAQAARALLVHQAFAPGGLLRRYGVGSAKDAPVARPALFLPTGQNLLETLLLNLVPYTPEDDAPIWEVPPLRLGDLEGARTKWPLTGRTRVYTWPARGVRLLDEGDGVRFMGYGPGVEPLEATHRDPMVAQRLDAKGNLLVLRLSEERSFWRDFSAMLPRQGGKVAATLEHAENLQGELEDEGLEGRITLRVLGQVSDQAKVLDIRREVYPLPSGLLTPKAEENLEKALKMAEELGQGLKHLAQEVAKAVVYLEELTKLANSLPLERLYWHALDGAFPRFFARVEEEASLDLWREALRGAALEAWKATRRFLGTGARHLKALAQGEQEFGRLLGEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords CSE1
publication title Mechanism of Foreign DNA Selection in a Bacterial Adaptive Immune System.
pubmed doi rcsb
source organism Thermus thermophilus
molecule tags Immune system
total genus 158
structure length 468
sequence length 493
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-03-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09481 CRISPR_Cse1 CRISPR-associated protein Cse1 (CRISPR_cse1)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.100 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 4an8A02
4F3EA 3WVOA 4H3TA 4AN8A 4EJ3A
chains in the Genus database with same CATH superfamily
1Y1VA 4QCLA 4KDDA 1R9TA 1Q8IA 2B9SB 2O5JD 1TL8A 1SMYD 2PMZA 4Q5VA 4LMOA 1MIUA 3H0GA 2WB1A 4KB4A 4AYBA 2A6ED 1RR8C 2A69D 1K4TA 3GTJA 4D3ZA 4EJ3A 1ISEA 3K57A 1TGOA 1I3QA 4F3EA 4KC6A 1HQMD 1WQGA 4OYDB 1SC7A 3K5MA 1TWHA 4H3TA 4KB2A 4AHCA 4C2MA 1Y1WA 2BE5D 1K4SA 2E2HA 1I6VD 1R5ZA 3GTQA 3LHPS 2E2IA 1IW7D 3FKIA 3GTOA 2R93A 4D3YA 2JA7A 5C9HA 1EH1A 1V9MA 4JLRC 3P9AA 4Q5GA 4GFQA 1NH3A 1TWGA 1I50A 4NOKA 2WAQA 1RRJA 3GTPA 2R4GA 3GTMA 1SEUA 1DD5A 2F4QA 5MLC9 3SJRA 3DU5A 3DU6A 1SFOA 3GTKA 1A36A 3K5LA 4AN8A 4O26A 4FXDA 2R7ZA 5CQGA 2CW0D 3WVOA 2JA5A 4FYDA 3HKZA 2Y0SA 3K58A 4NOLA 3GTLA 3GTGA 2YU9A 1EK8A 3KYLA 4KAWX 1YNND 1ZYRD 3MAQA 1WQFA 5JSNB 2NVXA 1LPQA 1R49A 4L8IA 3K5OA 1EJ9A 3IAYA 1YNJD 1TWFA 1K83A 1WCMA 2NVYA 1IS1A 3LF9A 4NOMA 3CQZA 2R92A 2A6HD 1T8IA 3M4AA 1GE9A 1TWCA 2JA6A 1TWAA 3K59A 2VUMA 1WQHA 5JSBB 2B63A 4FGUA 1Y698 4IP9A 4IP8A 3K5NA 4QIWA 1A31A 1A35A 2A68D
chains in the Genus database with same CATH topology
1Y1VA 4QCLA 4KDDA 1R9TA 1Q8IA 2B9SB 2O5JD 1TL8A 1SMYD 2PMZA 4Q5VA 4LMOA 1MIUA 3H0GA 2WB1A 4KB4A 4AYBA 2A6ED 1RR8C 2A69D 1K4TA 3GTJA 4D3ZA 4EJ3A 1ISEA 3K57A 1TGOA 1I3QA 4F3EA 4KC6A 1HQMD 1WQGA 4OYDB 1SC7A 3K5MA 1TWHA 4H3TA 4KB2A 4AHCA 4C2MA 1Y1WA 2BE5D 1K4SA 2E2HA 1I6VD 1R5ZA 3GTQA 3LHPS 2E2IA 1IW7D 3FKIA 3GTOA 2R93A 4D3YA 2JA7A 5C9HA 1EH1A 1V9MA 4JLRC 3P9AA 4Q5GA 4GFQA 1NH3A 1TWGA 1I50A 4NOKA 2WAQA 1RRJA 3GTPA 2R4GA 3GTMA 1SEUA 1DD5A 2F4QA 5MLC9 3SJRA 3DU5A 3DU6A 1SFOA 3GTKA 1A36A 3K5LA 4AN8A 4O26A 4FXDA 2R7ZA 5CQGA 2CW0D 3WVOA 2JA5A 4FYDA 3HKZA 2Y0SA 3K58A 4NOLA 3GTLA 3GTGA 2YU9A 1EK8A 3KYLA 4KAWX 1YNND 1ZYRD 3MAQA 1WQFA 5JSNB 2NVXA 1LPQA 1R49A 4L8IA 3K5OA 1EJ9A 3IAYA 1YNJD 1TWFA 1K83A 1WCMA 2NVYA 1IS1A 3LF9A 4NOMA 3CQZA 2R92A 2A6HD 1T8IA 3M4AA 1GE9A 1TWCA 2JA6A 1TWAA 3K59A 2VUMA 1WQHA 5JSBB 2B63A 4FGUA 1Y698 4IP9A 4IP8A 3K5NA 4QIWA 1A31A 1A35A 2A68D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4F3E A;  3WVO A;  4H3T A;  4AN8 A;  4EJ3 A; 
#chains in the Genus database with same CATH topology
 1Y1V A;  4QCL A;  4KDD A;  1R9T A;  1Q8I A;  2B9S B;  2O5J D;  1TL8 A;  1SMY D;  2PMZ A;  4Q5V A;  4LMO A;  1MIU A;  3H0G A;  2WB1 A;  4KB4 A;  4AYB A;  2A6E D;  1RR8 C;  2A69 D;  1K4T A;  3GTJ A;  4D3Z A;  4EJ3 A;  1ISE A;  3K57 A;  1TGO A;  1I3Q A;  4F3E A;  4KC6 A;  1HQM D;  1WQG A;  4OYD B;  1SC7 A;  3K5M A;  1TWH A;  4H3T A;  4KB2 A;  4AHC A;  4C2M A;  1Y1W A;  2BE5 D;  1K4S A;  2E2H A;  1I6V D;  1R5Z A;  3GTQ A;  3LHP S;  2E2I A;  1IW7 D;  3FKI A;  3GTO A;  2R93 A;  4D3Y A;  2JA7 A;  5C9H A;  1EH1 A;  1V9M A;  4JLR C;  3P9A A;  4Q5G A;  4GFQ A;  1NH3 A;  1TWG A;  1I50 A;  4NOK A;  2WAQ A;  1RRJ A;  3GTP A;  2R4G A;  3GTM A;  1SEU A;  1DD5 A;  2F4Q A;  5MLC 9;  3SJR A;  3DU5 A;  3DU6 A;  1SFO A;  3GTK A;  1A36 A;  3K5L A;  4AN8 A;  4O26 A;  4FXD A;  2R7Z A;  5CQG A;  2CW0 D;  3WVO A;  2JA5 A;  4FYD A;  3HKZ A;  2Y0S A;  3K58 A;  4NOL A;  3GTL A;  3GTG A;  2YU9 A;  1EK8 A;  3KYL A;  4KAW X;  1YNN D;  1ZYR D;  3MAQ A;  1WQF A;  5JSN B;  2NVX A;  1LPQ A;  1R49 A;  4L8I A;  3K5O A;  1EJ9 A;  3IAY A;  1YNJ D;  1TWF A;  1K83 A;  1WCM A;  2NVY A;  1IS1 A;  3LF9 A;  4NOM A;  3CQZ A;  2R92 A;  2A6H D;  1T8I A;  3M4A A;  1GE9 A;  1TWC A;  2JA6 A;  1TWA A;  3K59 A;  2VUM A;  1WQH A;  5JSB B;  2B63 A;  4FGU A;  1Y69 8;  4IP9 A;  4IP8 A;  3K5N A;  4QIW A;  1A31 A;  1A35 A;  2A68 D; 
#chains in the Genus database with same CATH homology
 1Y1V A;  4QCL A;  4KDD A;  1R9T A;  1Q8I A;  2B9S B;  2O5J D;  1TL8 A;  1SMY D;  2PMZ A;  4Q5V A;  4LMO A;  1MIU A;  3H0G A;  2WB1 A;  4KB4 A;  4AYB A;  2A6E D;  1RR8 C;  2A69 D;  1K4T A;  3GTJ A;  4D3Z A;  4EJ3 A;  1ISE A;  3K57 A;  1TGO A;  1I3Q A;  4F3E A;  4KC6 A;  1HQM D;  1WQG A;  4OYD B;  1SC7 A;  3K5M A;  1TWH A;  4H3T A;  4KB2 A;  4AHC A;  4C2M A;  1Y1W A;  2BE5 D;  1K4S A;  2E2H A;  1I6V D;  1R5Z A;  3GTQ A;  3LHP S;  2E2I A;  1IW7 D;  3FKI A;  3GTO A;  2R93 A;  4D3Y A;  2JA7 A;  5C9H A;  1EH1 A;  1V9M A;  4JLR C;  3P9A A;  4Q5G A;  4GFQ A;  1NH3 A;  1TWG A;  1I50 A;  4NOK A;  2WAQ A;  1RRJ A;  3GTP A;  2R4G A;  3GTM A;  1SEU A;  1DD5 A;  2F4Q A;  5MLC 9;  3SJR A;  3DU5 A;  3DU6 A;  1SFO A;  3GTK A;  1A36 A;  3K5L A;  4AN8 A;  4O26 A;  4FXD A;  2R7Z A;  5CQG A;  2CW0 D;  3WVO A;  2JA5 A;  4FYD A;  3HKZ A;  2Y0S A;  3K58 A;  4NOL A;  3GTL A;  3GTG A;  2YU9 A;  1EK8 A;  3KYL A;  4KAW X;  1YNN D;  1ZYR D;  3MAQ A;  1WQF A;  5JSN B;  2NVX A;  1LPQ A;  1R49 A;  4L8I A;  3K5O A;  1EJ9 A;  3IAY A;  1YNJ D;  1TWF A;  1K83 A;  1WCM A;  2NVY A;  1IS1 A;  3LF9 A;  4NOM A;  3CQZ A;  2R92 A;  2A6H D;  1T8I A;  3M4A A;  1GE9 A;  1TWC A;  2JA6 A;  1TWA A;  3K59 A;  2VUM A;  1WQH A;  5JSB B;  2B63 A;  4FGU A;  1Y69 8;  4IP9 A;  4IP8 A;  3K5N A;  4QIW A;  1A31 A;  1A35 A;  2A68 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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