4AN8A

Structure of thermus thermophilus casa (cse1)
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
493
structure length
468
Chain Sequence
LEKFNLIDEPWIPVLKGGRVVEVGIGEALLRAHEFARIETPSPLEEAVLHRLLLAVLHRALSGPRCPEDVLDWWRKGGFPQDPIRDYLNRFRDRFFLFHPEAPFLQVADLPEENPLPWSKLLPELANLPKATYAQAARALLVHQAFAPGGLLRRYGVGSAKDAPVARPALFLPTGQNLLETLLLNLVPYTPEDDAPIWEVPPLRLGDLEGARTKWPLTGRTRVYTWPARGVRLLDEGDGVRFMGYGPGVEPLEATHRDPMVAQRLDAKGNLLVLRLSEERSFWRDFSAMLPRQGGKVAATLEHAENLQGELEDEGLEGRITLRVLGQVSDQAKVLDIRREVYPLPSGLLTPKAEENLEKALKMAEELGQGLKHLAQEVAKAVVYLEELTKLANSLPLERLYWHALDGAFPRFFARVEEEASLDLWREALRGAALEAWKATRRFLGTGARHLKALAQGEQEFGRLLGEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Mechanism of Foreign DNA Selection in a Bacterial Adaptive Immune System.
pubmed doi rcsb
source organism Thermus thermophilus
molecule tags Immune system
molecule keywords CSE1
total genus 158
structure length 468
sequence length 493
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-03-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09481 CRISPR_Cse1 CRISPR-associated protein Cse1 (CRISPR_cse1)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.100 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 4an8A02
3WVOA 4F3EA 4H3TA 4EJ3A 4AN8A
chains in the Genus database with same CATH superfamily
1WQHA 2A6ED 2R92A 2PMZA 1RR8C 1K83A 3GTLA 4AYBA 4QCLA 2R93A 4NOLA 4FXDA 1IW7D 1RRJA 4OYDB 1K4SA 1LPQA 1EK8A 2A6HD 3K5NA 3K57A 4QIWA 3LF9A 3GTGA 4EJ3A 1SEUA 1Y1VA 1R5ZA 3DU5A 1TL8A 4H3TA 1IS1A 4KB2A 5C9HA 1TWCA 3K59A 2BE5D 1A31A 3GTJA 4AHCA 4KDDA 1TWHA 2WAQA 3GTQA 4O26A 1HQMD 1I3QA 4Q5GA 1TWAA 1WQGA 1TGOA 3MAQA 2B63A 1R9TA 1NH3A 3M4AA 3LHPS 3GTOA 2Y0SA 2E2HA 1WCMA 1T8IA 1R49A 2A69D 1V9MA 2F4QA 4GFQA 3FKIA 2JA5A 2E2IA 1WQFA 1Q8IA 5JSNB 3K58A 2B9SB 3IAYA 2VUMA 1ISEA 1YNJD 1SC7A 1TWGA 4F3EA 2YU9A 1GE9A 4D3ZA 4D3YA 1K4TA 2JA7A 4L8IA 1SFOA 2O5JD 4IP8A 3HKZA 3K5OA 4Q5VA 3K5LA 1EJ9A 1TWFA 4C2MA 3P9AA 4JLRC 1I50A 1MIUA 3CQZA 2WB1A 1I6VD 2JA6A 3GTMA 3GTPA 2R4GA 2A68D 4FGUA 3KYLA 3K5MA 1SMYD 5JSBB 1ZYRD 2NVXA 3H0GA 4NOKA 2NVYA 1A35A 4LMOA 1Y698 4KC6A 5MLC9 4KB4A 2R7ZA 3SJRA 2CW0D 3GTKA 4KAWX 1YNND 3DU6A 1DD5A 1EH1A 3WVOA 4NOMA 1A36A 4FYDA 4AN8A 4IP9A 5CQGA 1Y1WA
chains in the Genus database with same CATH topology
1WQHA 2A6ED 2R92A 2PMZA 1RR8C 1K83A 3GTLA 4AYBA 4QCLA 2R93A 4NOLA 4FXDA 1IW7D 1RRJA 4OYDB 1K4SA 1LPQA 1EK8A 2A6HD 3K5NA 3K57A 4QIWA 3LF9A 3GTGA 4EJ3A 1SEUA 1Y1VA 1R5ZA 3DU5A 1TL8A 4H3TA 1IS1A 4KB2A 5C9HA 1TWCA 3K59A 2BE5D 1A31A 3GTJA 4AHCA 4KDDA 1TWHA 2WAQA 3GTQA 4O26A 1HQMD 1I3QA 4Q5GA 1TWAA 1WQGA 1TGOA 3MAQA 2B63A 1R9TA 1NH3A 3M4AA 3LHPS 3GTOA 2Y0SA 2E2HA 1WCMA 1T8IA 1R49A 2A69D 1V9MA 2F4QA 4GFQA 3FKIA 2JA5A 2E2IA 1WQFA 1Q8IA 5JSNB 3K58A 2B9SB 3IAYA 2VUMA 1ISEA 1YNJD 1SC7A 1TWGA 4F3EA 2YU9A 1GE9A 4D3ZA 4D3YA 1K4TA 2JA7A 4L8IA 1SFOA 2O5JD 4IP8A 3HKZA 3K5OA 4Q5VA 3K5LA 1EJ9A 1TWFA 4C2MA 3P9AA 4JLRC 1I50A 1MIUA 3CQZA 2WB1A 1I6VD 2JA6A 3GTMA 3GTPA 2R4GA 2A68D 4FGUA 3KYLA 3K5MA 1SMYD 5JSBB 1ZYRD 2NVXA 3H0GA 4NOKA 2NVYA 1A35A 4LMOA 1Y698 4KC6A 5MLC9 4KB4A 2R7ZA 3SJRA 2CW0D 3GTKA 4KAWX 1YNND 3DU6A 1DD5A 1EH1A 3WVOA 4NOMA 1A36A 4FYDA 4AN8A 4IP9A 5CQGA 1Y1WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WVO A;  4F3E A;  4H3T A;  4EJ3 A;  4AN8 A; 
#chains in the Genus database with same CATH topology
 1WQH A;  2A6E D;  2R92 A;  2PMZ A;  1RR8 C;  1K83 A;  3GTL A;  4AYB A;  4QCL A;  2R93 A;  4NOL A;  4FXD A;  1IW7 D;  1RRJ A;  4OYD B;  1K4S A;  1LPQ A;  1EK8 A;  2A6H D;  3K5N A;  3K57 A;  4QIW A;  3LF9 A;  3GTG A;  4EJ3 A;  1SEU A;  1Y1V A;  1R5Z A;  3DU5 A;  1TL8 A;  4H3T A;  1IS1 A;  4KB2 A;  5C9H A;  1TWC A;  3K59 A;  2BE5 D;  1A31 A;  3GTJ A;  4AHC A;  4KDD A;  1TWH A;  2WAQ A;  3GTQ A;  4O26 A;  1HQM D;  1I3Q A;  4Q5G A;  1TWA A;  1WQG A;  1TGO A;  3MAQ A;  2B63 A;  1R9T A;  1NH3 A;  3M4A A;  3LHP S;  3GTO A;  2Y0S A;  2E2H A;  1WCM A;  1T8I A;  1R49 A;  2A69 D;  1V9M A;  2F4Q A;  4GFQ A;  3FKI A;  2JA5 A;  2E2I A;  1WQF A;  1Q8I A;  5JSN B;  3K58 A;  2B9S B;  3IAY A;  2VUM A;  1ISE A;  1YNJ D;  1SC7 A;  1TWG A;  4F3E A;  2YU9 A;  1GE9 A;  4D3Z A;  4D3Y A;  1K4T A;  2JA7 A;  4L8I A;  1SFO A;  2O5J D;  4IP8 A;  3HKZ A;  3K5O A;  4Q5V A;  3K5L A;  1EJ9 A;  1TWF A;  4C2M A;  3P9A A;  4JLR C;  1I50 A;  1MIU A;  3CQZ A;  2WB1 A;  1I6V D;  2JA6 A;  3GTM A;  3GTP A;  2R4G A;  2A68 D;  4FGU A;  3KYL A;  3K5M A;  1SMY D;  5JSB B;  1ZYR D;  2NVX A;  3H0G A;  4NOK A;  2NVY A;  1A35 A;  4LMO A;  1Y69 8;  4KC6 A;  5MLC 9;  4KB4 A;  2R7Z A;  3SJR A;  2CW0 D;  3GTK A;  4KAW X;  1YNN D;  3DU6 A;  1DD5 A;  1EH1 A;  3WVO A;  4NOM A;  1A36 A;  4FYD A;  4AN8 A;  4IP9 A;  5CQG A;  1Y1W A; 
#chains in the Genus database with same CATH homology
 1WQH A;  2A6E D;  2R92 A;  2PMZ A;  1RR8 C;  1K83 A;  3GTL A;  4AYB A;  4QCL A;  2R93 A;  4NOL A;  4FXD A;  1IW7 D;  1RRJ A;  4OYD B;  1K4S A;  1LPQ A;  1EK8 A;  2A6H D;  3K5N A;  3K57 A;  4QIW A;  3LF9 A;  3GTG A;  4EJ3 A;  1SEU A;  1Y1V A;  1R5Z A;  3DU5 A;  1TL8 A;  4H3T A;  1IS1 A;  4KB2 A;  5C9H A;  1TWC A;  3K59 A;  2BE5 D;  1A31 A;  3GTJ A;  4AHC A;  4KDD A;  1TWH A;  2WAQ A;  3GTQ A;  4O26 A;  1HQM D;  1I3Q A;  4Q5G A;  1TWA A;  1WQG A;  1TGO A;  3MAQ A;  2B63 A;  1R9T A;  1NH3 A;  3M4A A;  3LHP S;  3GTO A;  2Y0S A;  2E2H A;  1WCM A;  1T8I A;  1R49 A;  2A69 D;  1V9M A;  2F4Q A;  4GFQ A;  3FKI A;  2JA5 A;  2E2I A;  1WQF A;  1Q8I A;  5JSN B;  3K58 A;  2B9S B;  3IAY A;  2VUM A;  1ISE A;  1YNJ D;  1SC7 A;  1TWG A;  4F3E A;  2YU9 A;  1GE9 A;  4D3Z A;  4D3Y A;  1K4T A;  2JA7 A;  4L8I A;  1SFO A;  2O5J D;  4IP8 A;  3HKZ A;  3K5O A;  4Q5V A;  3K5L A;  1EJ9 A;  1TWF A;  4C2M A;  3P9A A;  4JLR C;  1I50 A;  1MIU A;  3CQZ A;  2WB1 A;  1I6V D;  2JA6 A;  3GTM A;  3GTP A;  2R4G A;  2A68 D;  4FGU A;  3KYL A;  3K5M A;  1SMY D;  5JSB B;  1ZYR D;  2NVX A;  3H0G A;  4NOK A;  2NVY A;  1A35 A;  4LMO A;  1Y69 8;  4KC6 A;  5MLC 9;  4KB4 A;  2R7Z A;  3SJR A;  2CW0 D;  3GTK A;  4KAW X;  1YNN D;  3DU6 A;  1DD5 A;  1EH1 A;  3WVO A;  4NOM A;  1A36 A;  4FYD A;  4AN8 A;  4IP9 A;  5CQG A;  1Y1W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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