4AN8A

Structure of thermus thermophilus casa (cse1)
Total Genus 158
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
493
structure length
468
Chain Sequence
b'LEKFNLIDEPWIPVLKGGRVVEVGIGEALLRAHEFARIETPSPLEEAVLHRLLLAVLHRALSGPRCPEDVLDWWRKGGFPQDPIRDYLNRFRDRFFLFHPEAPFLQVADLPEENPLPWSKLLPELANLPKATYAQAARALLVHQAFAPGGLLRRYGVGSAKDAPVARPALFLPTGQNLLETLLLNLVPYTPEDDAPIWEVPPLRLGDLEGARTKWPLTGRTRVYTWPARGVRLLDEGDGVRFMGYGPGVEPLEATHRDPMVAQRLDAKGNLLVLRLSEERSFWRDFSAMLPRQGGKVAATLEHAENLQGELEDEGLEGRITLRVLGQVSDQAKVLDIRREVYPLPSGLLTPKAEENLEKALKMAEELGQGLKHLAQEVAKAVVYLEELTKLANSLPLERLYWHALDGAFPRFFARVEEEASLDLWREALRGAALEAWKATRRFLGTGARHLKALAQGEQEFGRLLGEL'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords CSE1
molecule tags Immune system
source organism Thermus thermophilus
publication title Mechanism of Foreign DNA Selection in a Bacterial Adaptive Immune System.
pubmed doi rcsb
total genus 158
structure length 468
sequence length 493
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-03-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09481 CRISPR_Cse1 CRISPR-associated protein Cse1 (CRISPR_cse1)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.100 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 4an8A02
4H3TA 4EJ3A 4F3EA 3WVOA 4AN8A
chains in the Genus database with same CATH superfamily
4EJ3A 2BE5D 1K4SA 1GE9A 4IP9A 4JLRC 1EH1A 3IAYA 1I50A 2VUMA 5JSBB 3KYLA 2CW0D 4LMOA 1T8IA 4IP8A 3GTLA 3M4AA 3GTOA 1HQMD 1YNJD 1IW7D 3LHPS 4KC6A 4AHCA 5CQGA 4Q5VA 1SFOA 1IS1A 3K5LA 1TWAA 3K57A 3GTGA 3GTKA 1ZYRD 3DU6A 1MIUA 1TWFA 2F4QA 5C9HA 1EJ9A 4AN8A 4H3TA 4KAWX 3K59A 4O26A 1A35A 1WCMA 1I3QA 3K5MA 2JA7A 1V9MA 1SMYD 1EK8A 3GTQA 3LF9A 2PMZA 3HKZA 1LPQA 1Y698 1A31A 2E2IA 1Y1VA 3K5OA 2R93A 2B63A 4FGUA 2JA6A 3WVOA 1WQHA 2R92A 1Y1WA 3K58A 2A6HD 3DU5A 1RRJA 1NH3A 1TGOA 1WQGA 3FKIA 2B9SB 1R5ZA 2O5JD 3CQZA 1YNND 2A68D 4D3YA 1TWHA 1DD5A 2R7ZA 4FXDA 3MAQA 4AYBA 3SJRA 1TL8A 1WQFA 4KB2A 5JSNB 4OYDB 4Q5GA 1SC7A 2A6ED 1A36A 1ISEA 2WAQA 4QIWA 2A69D 3P9AA 5MLC9 2R4GA 1SEUA 3GTPA 4NOMA 3GTMA 4NOKA 1I6VD 3K5NA 1K4TA 1K83A 4QCLA 4KB4A 2YU9A 2E2HA 3H0GA 2Y0SA 4NOLA 3GTJA 1Q8IA 1R49A 4FYDA 2NVXA 4F3EA 2JA5A 4GFQA 4L8IA 4KDDA 4D3ZA 1TWCA 2WB1A 1R9TA 2NVYA 4C2MA 1TWGA 1RR8C
chains in the Genus database with same CATH topology
4EJ3A 2BE5D 1K4SA 1GE9A 4IP9A 4JLRC 1EH1A 3IAYA 1I50A 2VUMA 5JSBB 3KYLA 2CW0D 4LMOA 1T8IA 4IP8A 3GTLA 3M4AA 3GTOA 1HQMD 1YNJD 1IW7D 3LHPS 4KC6A 4AHCA 5CQGA 4Q5VA 1SFOA 1IS1A 3K5LA 1TWAA 3K57A 3GTGA 3GTKA 1ZYRD 3DU6A 1MIUA 1TWFA 2F4QA 5C9HA 1EJ9A 4AN8A 4H3TA 4KAWX 3K59A 4O26A 1A35A 1WCMA 1I3QA 3K5MA 2JA7A 1V9MA 1SMYD 1EK8A 3GTQA 3LF9A 2PMZA 3HKZA 1LPQA 1Y698 1A31A 2E2IA 1Y1VA 3K5OA 2R93A 2B63A 4FGUA 2JA6A 3WVOA 1WQHA 2R92A 1Y1WA 3K58A 2A6HD 3DU5A 1RRJA 1NH3A 1TGOA 1WQGA 3FKIA 2B9SB 1R5ZA 2O5JD 3CQZA 1YNND 2A68D 4D3YA 1TWHA 1DD5A 2R7ZA 4FXDA 3MAQA 4AYBA 3SJRA 1TL8A 1WQFA 4KB2A 5JSNB 4OYDB 4Q5GA 1SC7A 2A6ED 1A36A 1ISEA 2WAQA 4QIWA 2A69D 3P9AA 5MLC9 2R4GA 1SEUA 3GTPA 4NOMA 3GTMA 4NOKA 1I6VD 3K5NA 1K4TA 1K83A 4QCLA 4KB4A 2YU9A 2E2HA 3H0GA 2Y0SA 4NOLA 3GTJA 1Q8IA 1R49A 4FYDA 2NVXA 4F3EA 2JA5A 4GFQA 4L8IA 4KDDA 4D3ZA 1TWCA 2WB1A 1R9TA 2NVYA 4C2MA 1TWGA 1RR8C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4H3T A;  4EJ3 A;  4F3E A;  3WVO A;  4AN8 A; 
#chains in the Genus database with same CATH topology
 4EJ3 A;  2BE5 D;  1K4S A;  1GE9 A;  4IP9 A;  4JLR C;  1EH1 A;  3IAY A;  1I50 A;  2VUM A;  5JSB B;  3KYL A;  2CW0 D;  4LMO A;  1T8I A;  4IP8 A;  3GTL A;  3M4A A;  3GTO A;  1HQM D;  1YNJ D;  1IW7 D;  3LHP S;  4KC6 A;  4AHC A;  5CQG A;  4Q5V A;  1SFO A;  1IS1 A;  3K5L A;  1TWA A;  3K57 A;  3GTG A;  3GTK A;  1ZYR D;  3DU6 A;  1MIU A;  1TWF A;  2F4Q A;  5C9H A;  1EJ9 A;  4AN8 A;  4H3T A;  4KAW X;  3K59 A;  4O26 A;  1A35 A;  1WCM A;  1I3Q A;  3K5M A;  2JA7 A;  1V9M A;  1SMY D;  1EK8 A;  3GTQ A;  3LF9 A;  2PMZ A;  3HKZ A;  1LPQ A;  1Y69 8;  1A31 A;  2E2I A;  1Y1V A;  3K5O A;  2R93 A;  2B63 A;  4FGU A;  2JA6 A;  3WVO A;  1WQH A;  2R92 A;  1Y1W A;  3K58 A;  2A6H D;  3DU5 A;  1RRJ A;  1NH3 A;  1TGO A;  1WQG A;  3FKI A;  2B9S B;  1R5Z A;  2O5J D;  3CQZ A;  1YNN D;  2A68 D;  4D3Y A;  1TWH A;  1DD5 A;  2R7Z A;  4FXD A;  3MAQ A;  4AYB A;  3SJR A;  1TL8 A;  1WQF A;  4KB2 A;  5JSN B;  4OYD B;  4Q5G A;  1SC7 A;  2A6E D;  1A36 A;  1ISE A;  2WAQ A;  4QIW A;  2A69 D;  3P9A A;  5MLC 9;  2R4G A;  1SEU A;  3GTP A;  4NOM A;  3GTM A;  4NOK A;  1I6V D;  3K5N A;  1K4T A;  1K83 A;  4QCL A;  4KB4 A;  2YU9 A;  2E2H A;  3H0G A;  2Y0S A;  4NOL A;  3GTJ A;  1Q8I A;  1R49 A;  4FYD A;  2NVX A;  4F3E A;  2JA5 A;  4GFQ A;  4L8I A;  4KDD A;  4D3Z A;  1TWC A;  2WB1 A;  1R9T A;  2NVY A;  4C2M A;  1TWG A;  1RR8 C; 
#chains in the Genus database with same CATH homology
 4EJ3 A;  2BE5 D;  1K4S A;  1GE9 A;  4IP9 A;  4JLR C;  1EH1 A;  3IAY A;  1I50 A;  2VUM A;  5JSB B;  3KYL A;  2CW0 D;  4LMO A;  1T8I A;  4IP8 A;  3GTL A;  3M4A A;  3GTO A;  1HQM D;  1YNJ D;  1IW7 D;  3LHP S;  4KC6 A;  4AHC A;  5CQG A;  4Q5V A;  1SFO A;  1IS1 A;  3K5L A;  1TWA A;  3K57 A;  3GTG A;  3GTK A;  1ZYR D;  3DU6 A;  1MIU A;  1TWF A;  2F4Q A;  5C9H A;  1EJ9 A;  4AN8 A;  4H3T A;  4KAW X;  3K59 A;  4O26 A;  1A35 A;  1WCM A;  1I3Q A;  3K5M A;  2JA7 A;  1V9M A;  1SMY D;  1EK8 A;  3GTQ A;  3LF9 A;  2PMZ A;  3HKZ A;  1LPQ A;  1Y69 8;  1A31 A;  2E2I A;  1Y1V A;  3K5O A;  2R93 A;  2B63 A;  4FGU A;  2JA6 A;  3WVO A;  1WQH A;  2R92 A;  1Y1W A;  3K58 A;  2A6H D;  3DU5 A;  1RRJ A;  1NH3 A;  1TGO A;  1WQG A;  3FKI A;  2B9S B;  1R5Z A;  2O5J D;  3CQZ A;  1YNN D;  2A68 D;  4D3Y A;  1TWH A;  1DD5 A;  2R7Z A;  4FXD A;  3MAQ A;  4AYB A;  3SJR A;  1TL8 A;  1WQF A;  4KB2 A;  5JSN B;  4OYD B;  4Q5G A;  1SC7 A;  2A6E D;  1A36 A;  1ISE A;  2WAQ A;  4QIW A;  2A69 D;  3P9A A;  5MLC 9;  2R4G A;  1SEU A;  3GTP A;  4NOM A;  3GTM A;  4NOK A;  1I6V D;  3K5N A;  1K4T A;  1K83 A;  4QCL A;  4KB4 A;  2YU9 A;  2E2H A;  3H0G A;  2Y0S A;  4NOL A;  3GTJ A;  1Q8I A;  1R49 A;  4FYD A;  2NVX A;  4F3E A;  2JA5 A;  4GFQ A;  4L8I A;  4KDD A;  4D3Z A;  1TWC A;  2WB1 A;  1R9T A;  2NVY A;  4C2M A;  1TWG A;  1RR8 C; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...