4AN8A

Structure of thermus thermophilus casa (cse1)
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
493
structure length
468
Chain Sequence
LEKFNLIDEPWIPVLKGGRVVEVGIGEALLRAHEFARIETPSPLEEAVLHRLLLAVLHRALSGPRCPEDVLDWWRKGGFPQDPIRDYLNRFRDRFFLFHPEAPFLQVADLPEENPLPWSKLLPELANLPKATYAQAARALLVHQAFAPGGLLRRYGVGSAKDAPVARPALFLPTGQNLLETLLLNLVPYTPEDDAPIWEVPPLRLGDLEGARTKWPLTGRTRVYTWPARGVRLLDEGDGVRFMGYGPGVEPLEATHRDPMVAQRLDAKGNLLVLRLSEERSFWRDFSAMLPRQGGKVAATLEHAENLQGELEDEGLEGRITLRVLGQVSDQAKVLDIRREVYPLPSGLLTPKAEENLEKALKMAEELGQGLKHLAQEVAKAVVYLEELTKLANSLPLERLYWHALDGAFPRFFARVEEEASLDLWREALRGAALEAWKATRRFLGTGARHLKALAQGEQEFGRLLGEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Mechanism of Foreign DNA Selection in a Bacterial Adaptive Immune System.
pubmed doi rcsb
molecule keywords CSE1
source organism Thermus thermophilus
molecule tags Immune system
total genus 158
structure length 468
sequence length 493
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-03-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09481 CRISPR_Cse1 CRISPR-associated protein Cse1 (CRISPR_cse1)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.100 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 4an8A02
4EJ3A 4H3TA 3WVOA 4F3EA 4AN8A
chains in the Genus database with same CATH superfamily
1A31A 1EH1A 1TWHA 5JSBB 1IS1A 1SMYD 4D3ZA 1HQMD 1Q8IA 2NVYA 2NVXA 2BE5D 1TL8A 3GTMA 1TWCA 2A68D 4KDDA 1A36A 4LMOA 2B9SB 3HKZA 4H3TA 4AHCA 1Y698 1RR8C 3GTQA 4QCLA 4KB4A 1K83A 1ISEA 3GTGA 1WQGA 4NOKA 2JA6A 1WQFA 3FKIA 1I6VD 1I50A 4AYBA 4C2MA 4FGUA 1MIUA 1V9MA 1K4SA 1K4TA 3GTLA 4KB2A 2E2IA 1DD5A 4JLRC 2F4QA 1EJ9A 3IAYA 4EJ3A 2WAQA 5JSNB 3GTPA 1R9TA 1GE9A 4F3EA 3SJRA 3KYLA 3K59A 2O5JD 4NOLA 1EK8A 2B63A 1R5ZA 2A69D 5C9HA 2YU9A 1LPQA 1Y1WA 2R93A 1YNND 2R92A 1WQHA 3LHPS 1SEUA 3DU6A 4KC6A 4GFQA 1IW7D 3GTJA 2Y0SA 3LF9A 3K5NA 1TWAA 3CQZA 3WVOA 3K58A 4L8IA 2A6HD 1SFOA 1WCMA 4D3YA 1YNJD 4IP9A 3K57A 1TWGA 3K5OA 2CW0D 5MLC9 4AN8A 1Y1VA 5CQGA 2A6ED 3MAQA 1NH3A 2R4GA 3M4AA 2VUMA 3P9AA 2PMZA 1A35A 1TWFA 4O26A 4Q5GA 3K5LA 1TGOA 4Q5VA 3K5MA 1SC7A 4FXDA 1T8IA 2JA7A 4IP8A 4FYDA 3GTKA 4QIWA 3DU5A 1I3QA 1ZYRD 1R49A 4NOMA 1RRJA 2WB1A 3H0GA 2E2HA 2R7ZA 4KAWX 4OYDB 3GTOA 2JA5A
chains in the Genus database with same CATH topology
1A31A 1EH1A 1TWHA 5JSBB 1IS1A 1SMYD 4D3ZA 1HQMD 1Q8IA 2NVYA 2NVXA 2BE5D 1TL8A 3GTMA 1TWCA 2A68D 4KDDA 1A36A 4LMOA 2B9SB 3HKZA 4H3TA 4AHCA 1Y698 1RR8C 3GTQA 4QCLA 4KB4A 1K83A 1ISEA 3GTGA 1WQGA 4NOKA 2JA6A 1WQFA 3FKIA 1I6VD 1I50A 4AYBA 4C2MA 4FGUA 1MIUA 1V9MA 1K4SA 1K4TA 3GTLA 4KB2A 2E2IA 1DD5A 4JLRC 2F4QA 1EJ9A 3IAYA 4EJ3A 2WAQA 5JSNB 3GTPA 1R9TA 1GE9A 4F3EA 3SJRA 3KYLA 3K59A 2O5JD 4NOLA 1EK8A 2B63A 1R5ZA 2A69D 5C9HA 2YU9A 1LPQA 1Y1WA 2R93A 1YNND 2R92A 1WQHA 3LHPS 1SEUA 3DU6A 4KC6A 4GFQA 1IW7D 3GTJA 2Y0SA 3LF9A 3K5NA 1TWAA 3CQZA 3WVOA 3K58A 4L8IA 2A6HD 1SFOA 1WCMA 4D3YA 1YNJD 4IP9A 3K57A 1TWGA 3K5OA 2CW0D 5MLC9 4AN8A 1Y1VA 5CQGA 2A6ED 3MAQA 1NH3A 2R4GA 3M4AA 2VUMA 3P9AA 2PMZA 1A35A 1TWFA 4O26A 4Q5GA 3K5LA 1TGOA 4Q5VA 3K5MA 1SC7A 4FXDA 1T8IA 2JA7A 4IP8A 4FYDA 3GTKA 4QIWA 3DU5A 1I3QA 1ZYRD 1R49A 4NOMA 1RRJA 2WB1A 3H0GA 2E2HA 2R7ZA 4KAWX 4OYDB 3GTOA 2JA5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EJ3 A;  4H3T A;  3WVO A;  4F3E A;  4AN8 A; 
#chains in the Genus database with same CATH topology
 1A31 A;  1EH1 A;  1TWH A;  5JSB B;  1IS1 A;  1SMY D;  4D3Z A;  1HQM D;  1Q8I A;  2NVY A;  2NVX A;  2BE5 D;  1TL8 A;  3GTM A;  1TWC A;  2A68 D;  4KDD A;  1A36 A;  4LMO A;  2B9S B;  3HKZ A;  4H3T A;  4AHC A;  1Y69 8;  1RR8 C;  3GTQ A;  4QCL A;  4KB4 A;  1K83 A;  1ISE A;  3GTG A;  1WQG A;  4NOK A;  2JA6 A;  1WQF A;  3FKI A;  1I6V D;  1I50 A;  4AYB A;  4C2M A;  4FGU A;  1MIU A;  1V9M A;  1K4S A;  1K4T A;  3GTL A;  4KB2 A;  2E2I A;  1DD5 A;  4JLR C;  2F4Q A;  1EJ9 A;  3IAY A;  4EJ3 A;  2WAQ A;  5JSN B;  3GTP A;  1R9T A;  1GE9 A;  4F3E A;  3SJR A;  3KYL A;  3K59 A;  2O5J D;  4NOL A;  1EK8 A;  2B63 A;  1R5Z A;  2A69 D;  5C9H A;  2YU9 A;  1LPQ A;  1Y1W A;  2R93 A;  1YNN D;  2R92 A;  1WQH A;  3LHP S;  1SEU A;  3DU6 A;  4KC6 A;  4GFQ A;  1IW7 D;  3GTJ A;  2Y0S A;  3LF9 A;  3K5N A;  1TWA A;  3CQZ A;  3WVO A;  3K58 A;  4L8I A;  2A6H D;  1SFO A;  1WCM A;  4D3Y A;  1YNJ D;  4IP9 A;  3K57 A;  1TWG A;  3K5O A;  2CW0 D;  5MLC 9;  4AN8 A;  1Y1V A;  5CQG A;  2A6E D;  3MAQ A;  1NH3 A;  2R4G A;  3M4A A;  2VUM A;  3P9A A;  2PMZ A;  1A35 A;  1TWF A;  4O26 A;  4Q5G A;  3K5L A;  1TGO A;  4Q5V A;  3K5M A;  1SC7 A;  4FXD A;  1T8I A;  2JA7 A;  4IP8 A;  4FYD A;  3GTK A;  4QIW A;  3DU5 A;  1I3Q A;  1ZYR D;  1R49 A;  4NOM A;  1RRJ A;  2WB1 A;  3H0G A;  2E2H A;  2R7Z A;  4KAW X;  4OYD B;  3GTO A;  2JA5 A; 
#chains in the Genus database with same CATH homology
 1A31 A;  1EH1 A;  1TWH A;  5JSB B;  1IS1 A;  1SMY D;  4D3Z A;  1HQM D;  1Q8I A;  2NVY A;  2NVX A;  2BE5 D;  1TL8 A;  3GTM A;  1TWC A;  2A68 D;  4KDD A;  1A36 A;  4LMO A;  2B9S B;  3HKZ A;  4H3T A;  4AHC A;  1Y69 8;  1RR8 C;  3GTQ A;  4QCL A;  4KB4 A;  1K83 A;  1ISE A;  3GTG A;  1WQG A;  4NOK A;  2JA6 A;  1WQF A;  3FKI A;  1I6V D;  1I50 A;  4AYB A;  4C2M A;  4FGU A;  1MIU A;  1V9M A;  1K4S A;  1K4T A;  3GTL A;  4KB2 A;  2E2I A;  1DD5 A;  4JLR C;  2F4Q A;  1EJ9 A;  3IAY A;  4EJ3 A;  2WAQ A;  5JSN B;  3GTP A;  1R9T A;  1GE9 A;  4F3E A;  3SJR A;  3KYL A;  3K59 A;  2O5J D;  4NOL A;  1EK8 A;  2B63 A;  1R5Z A;  2A69 D;  5C9H A;  2YU9 A;  1LPQ A;  1Y1W A;  2R93 A;  1YNN D;  2R92 A;  1WQH A;  3LHP S;  1SEU A;  3DU6 A;  4KC6 A;  4GFQ A;  1IW7 D;  3GTJ A;  2Y0S A;  3LF9 A;  3K5N A;  1TWA A;  3CQZ A;  3WVO A;  3K58 A;  4L8I A;  2A6H D;  1SFO A;  1WCM A;  4D3Y A;  1YNJ D;  4IP9 A;  3K57 A;  1TWG A;  3K5O A;  2CW0 D;  5MLC 9;  4AN8 A;  1Y1V A;  5CQG A;  2A6E D;  3MAQ A;  1NH3 A;  2R4G A;  3M4A A;  2VUM A;  3P9A A;  2PMZ A;  1A35 A;  1TWF A;  4O26 A;  4Q5G A;  3K5L A;  1TGO A;  4Q5V A;  3K5M A;  1SC7 A;  4FXD A;  1T8I A;  2JA7 A;  4IP8 A;  4FYD A;  3GTK A;  4QIW A;  3DU5 A;  1I3Q A;  1ZYR D;  1R49 A;  4NOM A;  1RRJ A;  2WB1 A;  3H0G A;  2E2H A;  2R7Z A;  4KAW X;  4OYD B;  3GTO A;  2JA5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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