4EJ3A

Crystal structure of a crispr associated protein from thermus thermophilus hb8
Total Genus 148
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
493
structure length
467
Chain Sequence
b'EKFNLIDEPWIPVLKGGRVVEVGIGEALLRAHEFARIETPSPLEEAVLHRLLLAVLHRALSGPRCPEDVLDWWRKGGFPQDPIRDYLNRFRDRFFLFHPEAPFLQVADLPEENPLPWSKLLPELNLPKATYAQAARALLVHQAFAPGGLLRRYGVGSAKDAPVARPALFLPTGQNLLETLLLNLVPYTPEDDAPIWEVPPLRLGDLEGARTKWPLTGRTRVYTWPARGVRLLDEGDGVRFMGYGPGVEPLEATHRDPMVAQRLDAKGNLLVLRLSEERSFWRDFSAMLPRQGGKVAATLEHAENLQGELEDEGLEGRITLRVLGQVSDQAKVLDIRREVYPLPSGLLTPKAEENLEKALKMAEELGQGLKHLAQEVAKAVVYLEELTKLANSLPLERLYWHALDGAFPRFFARVEEEASLDLWREALRGAALEAWKATRRFLGTGARHLKALAQGEQEFGRLLGELG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords CRISPR associated protein
molecule tags Signaling protein
source organism Thermus thermophilus
publication title Crystal structure of a CRISPR associated protein from Thermus thermophilus HB8
rcsb
total genus 148
structure length 467
sequence length 493
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-04-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09481 CRISPR_Cse1 CRISPR-associated protein Cse1 (CRISPR_cse1)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.100 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 4ej3A02
4EJ3A 4AN8A 4H3TA 3WVOA 4F3EA
chains in the Genus database with same CATH superfamily
2O5JD 1HQMD 4FGUA 4O26A 1NH3A 3FKIA 5MLC9 1TWCA 4FXDA 4D3ZA 1IW7D 3HKZA 3KYLA 4IP8A 2Y0SA 1I6VD 1I50A 2B63A 2A6ED 4KB4A 1R49A 1TGOA 1A31A 1A36A 2PMZA 2WB1A 1Y1VA 4OYDB 1TL8A 4Q5GA 1I3QA 3SJRA 1TWAA 1SEUA 4Q5VA 1SC7A 1SMYD 2CW0D 2NVXA 4L8IA 3P9AA 1EH1A 1RR8C 2A69D 5JSNB 3K5OA 2B9SB 3GTMA 3H0GA 1YNJD 4C2MA 3K59A 3DU5A 4D3YA 3GTJA 3GTGA 1EK8A 4NOLA 4H3TA 2VUMA 1K4TA 1LPQA 1EJ9A 4QIWA 3IAYA 1WQFA 3K5MA 1V9MA 4LMOA 2YU9A 4F3EA 4AYBA 1TWHA 1Y698 3LHPS 1ISEA 3CQZA 4AN8A 4FYDA 4QCLA 4IP9A 2BE5D 4KB2A 2R93A 1TWGA 1YNND 1WCMA 4GFQA 4NOMA 2JA6A 1GE9A 1WQHA 3MAQA 3GTPA 2R7ZA 3K57A 3GTLA 3GTOA 3GTQA 2R4GA 4KAWX 1IS1A 1Q8IA 2E2HA 3M4AA 3K5LA 1R5ZA 3GTKA 3WVOA 1DD5A 1TWFA 1RRJA 1Y1WA 3K5NA 4KC6A 4KDDA 3LF9A 2A6HD 4NOKA 4JLRC 4EJ3A 5CQGA 2JA7A 1MIUA 1SFOA 1K83A 1WQGA 2R92A 3DU6A 2A68D 1K4SA 1R9TA 5JSBB 3K58A 2NVYA 5C9HA 4AHCA 2E2IA 2F4QA 2JA5A 1ZYRD 1A35A 2WAQA 1T8IA
chains in the Genus database with same CATH topology
2O5JD 1HQMD 4FGUA 4O26A 1NH3A 3FKIA 5MLC9 1TWCA 4FXDA 4D3ZA 1IW7D 3HKZA 3KYLA 4IP8A 2Y0SA 1I6VD 1I50A 2B63A 2A6ED 4KB4A 1R49A 1TGOA 1A31A 1A36A 2PMZA 2WB1A 1Y1VA 4OYDB 1TL8A 4Q5GA 1I3QA 3SJRA 1TWAA 1SEUA 4Q5VA 1SC7A 1SMYD 2CW0D 2NVXA 4L8IA 3P9AA 1EH1A 1RR8C 2A69D 5JSNB 3K5OA 2B9SB 3GTMA 3H0GA 1YNJD 4C2MA 3K59A 3DU5A 4D3YA 3GTJA 3GTGA 1EK8A 4NOLA 4H3TA 2VUMA 1K4TA 1LPQA 1EJ9A 4QIWA 3IAYA 1WQFA 3K5MA 1V9MA 4LMOA 2YU9A 4F3EA 4AYBA 1TWHA 1Y698 3LHPS 1ISEA 3CQZA 4AN8A 4FYDA 4QCLA 4IP9A 2BE5D 4KB2A 2R93A 1TWGA 1YNND 1WCMA 4GFQA 4NOMA 2JA6A 1GE9A 1WQHA 3MAQA 3GTPA 2R7ZA 3K57A 3GTLA 3GTOA 3GTQA 2R4GA 4KAWX 1IS1A 1Q8IA 2E2HA 3M4AA 3K5LA 1R5ZA 3GTKA 3WVOA 1DD5A 1TWFA 1RRJA 1Y1WA 3K5NA 4KC6A 4KDDA 3LF9A 2A6HD 4NOKA 4JLRC 4EJ3A 5CQGA 2JA7A 1MIUA 1SFOA 1K83A 1WQGA 2R92A 3DU6A 2A68D 1K4SA 1R9TA 5JSBB 3K58A 2NVYA 5C9HA 4AHCA 2E2IA 2F4QA 2JA5A 1ZYRD 1A35A 2WAQA 1T8IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EJ3 A;  4AN8 A;  4H3T A;  3WVO A;  4F3E A; 
#chains in the Genus database with same CATH topology
 2O5J D;  1HQM D;  4FGU A;  4O26 A;  1NH3 A;  3FKI A;  5MLC 9;  1TWC A;  4FXD A;  4D3Z A;  1IW7 D;  3HKZ A;  3KYL A;  4IP8 A;  2Y0S A;  1I6V D;  1I50 A;  2B63 A;  2A6E D;  4KB4 A;  1R49 A;  1TGO A;  1A31 A;  1A36 A;  2PMZ A;  2WB1 A;  1Y1V A;  4OYD B;  1TL8 A;  4Q5G A;  1I3Q A;  3SJR A;  1TWA A;  1SEU A;  4Q5V A;  1SC7 A;  1SMY D;  2CW0 D;  2NVX A;  4L8I A;  3P9A A;  1EH1 A;  1RR8 C;  2A69 D;  5JSN B;  3K5O A;  2B9S B;  3GTM A;  3H0G A;  1YNJ D;  4C2M A;  3K59 A;  3DU5 A;  4D3Y A;  3GTJ A;  3GTG A;  1EK8 A;  4NOL A;  4H3T A;  2VUM A;  1K4T A;  1LPQ A;  1EJ9 A;  4QIW A;  3IAY A;  1WQF A;  3K5M A;  1V9M A;  4LMO A;  2YU9 A;  4F3E A;  4AYB A;  1TWH A;  1Y69 8;  3LHP S;  1ISE A;  3CQZ A;  4AN8 A;  4FYD A;  4QCL A;  4IP9 A;  2BE5 D;  4KB2 A;  2R93 A;  1TWG A;  1YNN D;  1WCM A;  4GFQ A;  4NOM A;  2JA6 A;  1GE9 A;  1WQH A;  3MAQ A;  3GTP A;  2R7Z A;  3K57 A;  3GTL A;  3GTO A;  3GTQ A;  2R4G A;  4KAW X;  1IS1 A;  1Q8I A;  2E2H A;  3M4A A;  3K5L A;  1R5Z A;  3GTK A;  3WVO A;  1DD5 A;  1TWF A;  1RRJ A;  1Y1W A;  3K5N A;  4KC6 A;  4KDD A;  3LF9 A;  2A6H D;  4NOK A;  4JLR C;  4EJ3 A;  5CQG A;  2JA7 A;  1MIU A;  1SFO A;  1K83 A;  1WQG A;  2R92 A;  3DU6 A;  2A68 D;  1K4S A;  1R9T A;  5JSB B;  3K58 A;  2NVY A;  5C9H A;  4AHC A;  2E2I A;  2F4Q A;  2JA5 A;  1ZYR D;  1A35 A;  2WAQ A;  1T8I A; 
#chains in the Genus database with same CATH homology
 2O5J D;  1HQM D;  4FGU A;  4O26 A;  1NH3 A;  3FKI A;  5MLC 9;  1TWC A;  4FXD A;  4D3Z A;  1IW7 D;  3HKZ A;  3KYL A;  4IP8 A;  2Y0S A;  1I6V D;  1I50 A;  2B63 A;  2A6E D;  4KB4 A;  1R49 A;  1TGO A;  1A31 A;  1A36 A;  2PMZ A;  2WB1 A;  1Y1V A;  4OYD B;  1TL8 A;  4Q5G A;  1I3Q A;  3SJR A;  1TWA A;  1SEU A;  4Q5V A;  1SC7 A;  1SMY D;  2CW0 D;  2NVX A;  4L8I A;  3P9A A;  1EH1 A;  1RR8 C;  2A69 D;  5JSN B;  3K5O A;  2B9S B;  3GTM A;  3H0G A;  1YNJ D;  4C2M A;  3K59 A;  3DU5 A;  4D3Y A;  3GTJ A;  3GTG A;  1EK8 A;  4NOL A;  4H3T A;  2VUM A;  1K4T A;  1LPQ A;  1EJ9 A;  4QIW A;  3IAY A;  1WQF A;  3K5M A;  1V9M A;  4LMO A;  2YU9 A;  4F3E A;  4AYB A;  1TWH A;  1Y69 8;  3LHP S;  1ISE A;  3CQZ A;  4AN8 A;  4FYD A;  4QCL A;  4IP9 A;  2BE5 D;  4KB2 A;  2R93 A;  1TWG A;  1YNN D;  1WCM A;  4GFQ A;  4NOM A;  2JA6 A;  1GE9 A;  1WQH A;  3MAQ A;  3GTP A;  2R7Z A;  3K57 A;  3GTL A;  3GTO A;  3GTQ A;  2R4G A;  4KAW X;  1IS1 A;  1Q8I A;  2E2H A;  3M4A A;  3K5L A;  1R5Z A;  3GTK A;  3WVO A;  1DD5 A;  1TWF A;  1RRJ A;  1Y1W A;  3K5N A;  4KC6 A;  4KDD A;  3LF9 A;  2A6H D;  4NOK A;  4JLR C;  4EJ3 A;  5CQG A;  2JA7 A;  1MIU A;  1SFO A;  1K83 A;  1WQG A;  2R92 A;  3DU6 A;  2A68 D;  1K4S A;  1R9T A;  5JSB B;  3K58 A;  2NVY A;  5C9H A;  4AHC A;  2E2I A;  2F4Q A;  2JA5 A;  1ZYR D;  1A35 A;  2WAQ A;  1T8I A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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