4EJ3A

Crystal structure of a crispr associated protein from thermus thermophilus hb8
Total Genus 148
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
493
structure length
467
Chain Sequence
EKFNLIDEPWIPVLKGGRVVEVGIGEALLRAHEFARIETPSPLEEAVLHRLLLAVLHRALSGPRCPEDVLDWWRKGGFPQDPIRDYLNRFRDRFFLFHPEAPFLQVADLPEENPLPWSKLLPELNLPKATYAQAARALLVHQAFAPGGLLRRYGVGSAKDAPVARPALFLPTGQNLLETLLLNLVPYTPEDDAPIWEVPPLRLGDLEGARTKWPLTGRTRVYTWPARGVRLLDEGDGVRFMGYGPGVEPLEATHRDPMVAQRLDAKGNLLVLRLSEERSFWRDFSAMLPRQGGKVAATLEHAENLQGELEDEGLEGRITLRVLGQVSDQAKVLDIRREVYPLPSGLLTPKAEENLEKALKMAEELGQGLKHLAQEVAKAVVYLEELTKLANSLPLERLYWHALDGAFPRFFARVEEEASLDLWREALRGAALEAWKATRRFLGTGARHLKALAQGEQEFGRLLGELG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords CRISPR associated protein
publication title Crystal structure of a CRISPR associated protein from Thermus thermophilus HB8
rcsb
source organism Thermus thermophilus
total genus 148
structure length 467
sequence length 493
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-04-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09481 CRISPR_Cse1 CRISPR-associated protein Cse1 (CRISPR_cse1)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.100 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 4ej3A02
4AN8A 4H3TA 3WVOA 4EJ3A 4F3EA
chains in the Genus database with same CATH superfamily
2NVXA 2R7ZA 2A68D 1HQMD 2R4GA 4FGUA 3FKIA 2E2IA 2E2HA 1MIUA 1A36A 1SMYD 1WQFA 3DU5A 2CW0D 1T8IA 4KB2A 1SC7A 1SEUA 4H3TA 3HKZA 4NOMA 5JSNB 4QCLA 1IS1A 1TWGA 3K57A 1EJ9A 2O5JD 4D3YA 4KAWX 3GTQA 3MAQA 1I3QA 1DD5A 1R9TA 3GTKA 1A31A 2JA7A 1LPQA 1A35A 2A6HD 3GTOA 1EH1A 2A6ED 1R5ZA 1ZYRD 4QIWA 3P9AA 4Q5VA 4O26A 1Y1WA 4L8IA 1I50A 3LF9A 3SJRA 3IAYA 3M4AA 1K4SA 1IW7D 1TWHA 2PMZA 1RR8C 3GTPA 4NOLA 3KYLA 4Q5GA 2WB1A 3GTMA 4JLRC 1WCMA 1TWAA 1WQGA 1V9MA 1Y698 4LMOA 1SFOA 3WVOA 4AYBA 4NOKA 2B63A 4FXDA 2NVYA 2VUMA 3K5NA 5CQGA 1K83A 4IP8A 4IP9A 2F4QA 2R92A 5C9HA 1YNND 1TWCA 3GTLA 4FYDA 1K4TA 2A69D 3DU6A 1Q8IA 5MLC9 3K5MA 1Y1VA 2B9SB 1NH3A 2R93A 3K5OA 1GE9A 4F3EA 1RRJA 1TWFA 4GFQA 1TL8A 3LHPS 3K58A 4AHCA 4OYDB 3CQZA 1ISEA 4AN8A 4D3ZA 1TGOA 2Y0SA 3H0GA 1WQHA 2BE5D 3GTGA 4KDDA 4C2MA 4KC6A 1R49A 5JSBB 2JA5A 2YU9A 3GTJA 3K5LA 1I6VD 2WAQA 2JA6A 1YNJD 1EK8A 3K59A 4KB4A 4EJ3A
chains in the Genus database with same CATH topology
2NVXA 2R7ZA 2A68D 1HQMD 2R4GA 4FGUA 3FKIA 2E2IA 2E2HA 1MIUA 1A36A 1SMYD 1WQFA 3DU5A 2CW0D 1T8IA 4KB2A 1SC7A 1SEUA 4H3TA 3HKZA 4NOMA 5JSNB 4QCLA 1IS1A 1TWGA 3K57A 1EJ9A 2O5JD 4D3YA 4KAWX 3GTQA 3MAQA 1I3QA 1DD5A 1R9TA 3GTKA 1A31A 2JA7A 1LPQA 1A35A 2A6HD 3GTOA 1EH1A 2A6ED 1R5ZA 1ZYRD 4QIWA 3P9AA 4Q5VA 4O26A 1Y1WA 4L8IA 1I50A 3LF9A 3SJRA 3IAYA 3M4AA 1K4SA 1IW7D 1TWHA 2PMZA 1RR8C 3GTPA 4NOLA 3KYLA 4Q5GA 2WB1A 3GTMA 4JLRC 1WCMA 1TWAA 1WQGA 1V9MA 1Y698 4LMOA 1SFOA 3WVOA 4AYBA 4NOKA 2B63A 4FXDA 2NVYA 2VUMA 3K5NA 5CQGA 1K83A 4IP8A 4IP9A 2F4QA 2R92A 5C9HA 1YNND 1TWCA 3GTLA 4FYDA 1K4TA 2A69D 3DU6A 1Q8IA 5MLC9 3K5MA 1Y1VA 2B9SB 1NH3A 2R93A 3K5OA 1GE9A 4F3EA 1RRJA 1TWFA 4GFQA 1TL8A 3LHPS 3K58A 4AHCA 4OYDB 3CQZA 1ISEA 4AN8A 4D3ZA 1TGOA 2Y0SA 3H0GA 1WQHA 2BE5D 3GTGA 4KDDA 4C2MA 4KC6A 1R49A 5JSBB 2JA5A 2YU9A 3GTJA 3K5LA 1I6VD 2WAQA 2JA6A 1YNJD 1EK8A 3K59A 4KB4A 4EJ3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AN8 A;  4H3T A;  3WVO A;  4EJ3 A;  4F3E A; 
#chains in the Genus database with same CATH topology
 2NVX A;  2R7Z A;  2A68 D;  1HQM D;  2R4G A;  4FGU A;  3FKI A;  2E2I A;  2E2H A;  1MIU A;  1A36 A;  1SMY D;  1WQF A;  3DU5 A;  2CW0 D;  1T8I A;  4KB2 A;  1SC7 A;  1SEU A;  4H3T A;  3HKZ A;  4NOM A;  5JSN B;  4QCL A;  1IS1 A;  1TWG A;  3K57 A;  1EJ9 A;  2O5J D;  4D3Y A;  4KAW X;  3GTQ A;  3MAQ A;  1I3Q A;  1DD5 A;  1R9T A;  3GTK A;  1A31 A;  2JA7 A;  1LPQ A;  1A35 A;  2A6H D;  3GTO A;  1EH1 A;  2A6E D;  1R5Z A;  1ZYR D;  4QIW A;  3P9A A;  4Q5V A;  4O26 A;  1Y1W A;  4L8I A;  1I50 A;  3LF9 A;  3SJR A;  3IAY A;  3M4A A;  1K4S A;  1IW7 D;  1TWH A;  2PMZ A;  1RR8 C;  3GTP A;  4NOL A;  3KYL A;  4Q5G A;  2WB1 A;  3GTM A;  4JLR C;  1WCM A;  1TWA A;  1WQG A;  1V9M A;  1Y69 8;  4LMO A;  1SFO A;  3WVO A;  4AYB A;  4NOK A;  2B63 A;  4FXD A;  2NVY A;  2VUM A;  3K5N A;  5CQG A;  1K83 A;  4IP8 A;  4IP9 A;  2F4Q A;  2R92 A;  5C9H A;  1YNN D;  1TWC A;  3GTL A;  4FYD A;  1K4T A;  2A69 D;  3DU6 A;  1Q8I A;  5MLC 9;  3K5M A;  1Y1V A;  2B9S B;  1NH3 A;  2R93 A;  3K5O A;  1GE9 A;  4F3E A;  1RRJ A;  1TWF A;  4GFQ A;  1TL8 A;  3LHP S;  3K58 A;  4AHC A;  4OYD B;  3CQZ A;  1ISE A;  4AN8 A;  4D3Z A;  1TGO A;  2Y0S A;  3H0G A;  1WQH A;  2BE5 D;  3GTG A;  4KDD A;  4C2M A;  4KC6 A;  1R49 A;  5JSB B;  2JA5 A;  2YU9 A;  3GTJ A;  3K5L A;  1I6V D;  2WAQ A;  2JA6 A;  1YNJ D;  1EK8 A;  3K59 A;  4KB4 A;  4EJ3 A; 
#chains in the Genus database with same CATH homology
 2NVX A;  2R7Z A;  2A68 D;  1HQM D;  2R4G A;  4FGU A;  3FKI A;  2E2I A;  2E2H A;  1MIU A;  1A36 A;  1SMY D;  1WQF A;  3DU5 A;  2CW0 D;  1T8I A;  4KB2 A;  1SC7 A;  1SEU A;  4H3T A;  3HKZ A;  4NOM A;  5JSN B;  4QCL A;  1IS1 A;  1TWG A;  3K57 A;  1EJ9 A;  2O5J D;  4D3Y A;  4KAW X;  3GTQ A;  3MAQ A;  1I3Q A;  1DD5 A;  1R9T A;  3GTK A;  1A31 A;  2JA7 A;  1LPQ A;  1A35 A;  2A6H D;  3GTO A;  1EH1 A;  2A6E D;  1R5Z A;  1ZYR D;  4QIW A;  3P9A A;  4Q5V A;  4O26 A;  1Y1W A;  4L8I A;  1I50 A;  3LF9 A;  3SJR A;  3IAY A;  3M4A A;  1K4S A;  1IW7 D;  1TWH A;  2PMZ A;  1RR8 C;  3GTP A;  4NOL A;  3KYL A;  4Q5G A;  2WB1 A;  3GTM A;  4JLR C;  1WCM A;  1TWA A;  1WQG A;  1V9M A;  1Y69 8;  4LMO A;  1SFO A;  3WVO A;  4AYB A;  4NOK A;  2B63 A;  4FXD A;  2NVY A;  2VUM A;  3K5N A;  5CQG A;  1K83 A;  4IP8 A;  4IP9 A;  2F4Q A;  2R92 A;  5C9H A;  1YNN D;  1TWC A;  3GTL A;  4FYD A;  1K4T A;  2A69 D;  3DU6 A;  1Q8I A;  5MLC 9;  3K5M A;  1Y1V A;  2B9S B;  1NH3 A;  2R93 A;  3K5O A;  1GE9 A;  4F3E A;  1RRJ A;  1TWF A;  4GFQ A;  1TL8 A;  3LHP S;  3K58 A;  4AHC A;  4OYD B;  3CQZ A;  1ISE A;  4AN8 A;  4D3Z A;  1TGO A;  2Y0S A;  3H0G A;  1WQH A;  2BE5 D;  3GTG A;  4KDD A;  4C2M A;  4KC6 A;  1R49 A;  5JSB B;  2JA5 A;  2YU9 A;  3GTJ A;  3K5L A;  1I6V D;  2WAQ A;  2JA6 A;  1YNJ D;  1EK8 A;  3K59 A;  4KB4 A;  4EJ3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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