4EJ3A

Crystal structure of a crispr associated protein from thermus thermophilus hb8
Total Genus 148
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
493
structure length
467
Chain Sequence
EKFNLIDEPWIPVLKGGRVVEVGIGEALLRAHEFARIETPSPLEEAVLHRLLLAVLHRALSGPRCPEDVLDWWRKGGFPQDPIRDYLNRFRDRFFLFHPEAPFLQVADLPEENPLPWSKLLPELNLPKATYAQAARALLVHQAFAPGGLLRRYGVGSAKDAPVARPALFLPTGQNLLETLLLNLVPYTPEDDAPIWEVPPLRLGDLEGARTKWPLTGRTRVYTWPARGVRLLDEGDGVRFMGYGPGVEPLEATHRDPMVAQRLDAKGNLLVLRLSEERSFWRDFSAMLPRQGGKVAATLEHAENLQGELEDEGLEGRITLRVLGQVSDQAKVLDIRREVYPLPSGLLTPKAEENLEKALKMAEELGQGLKHLAQEVAKAVVYLEELTKLANSLPLERLYWHALDGAFPRFFARVEEEASLDLWREALRGAALEAWKATRRFLGTGARHLKALAQGEQEFGRLLGELG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords CRISPR associated protein
publication title Crystal structure of a CRISPR associated protein from Thermus thermophilus HB8
rcsb
source organism Thermus thermophilus
molecule tags Signaling protein
total genus 148
structure length 467
sequence length 493
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-04-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09481 CRISPR_Cse1 CRISPR-associated protein Cse1 (CRISPR_cse1)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.100 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 4ej3A02
4EJ3A 3WVOA 4AN8A 4H3TA 4F3EA
chains in the Genus database with same CATH superfamily
3P9AA 2NVXA 4IP9A 1YNND 1YNJD 1I50A 4D3ZA 4QIWA 4KAWX 1SMYD 1TWGA 4Q5GA 5CQGA 2VUMA 2O5JD 1R5ZA 2B9SB 4GFQA 1TWAA 4KB2A 4KB4A 1A36A 1TWCA 4LMOA 4NOKA 3WVOA 4F3EA 3GTJA 4C2MA 4QCLA 2R7ZA 2NVYA 2Y0SA 1DD5A 1RRJA 1TWHA 3DU6A 3LF9A 1SEUA 1Q8IA 3GTQA 3LHPS 3KYLA 1T8IA 1A31A 3K59A 3K57A 1I3QA 3GTPA 4D3YA 1EJ9A 4OYDB 1R9TA 1HQMD 3M4AA 1Y698 1I6VD 2A6ED 3FKIA 3H0GA 4AHCA 3GTOA 1R49A 3DU5A 4JLRC 2R93A 1NH3A 3GTMA 4FXDA 2WAQA 3K5OA 4O26A 4FGUA 1RR8C 4KC6A 4AN8A 1V9MA 2JA7A 2R92A 1IW7D 1K4SA 1WQFA 4KDDA 4Q5VA 1MIUA 1K4TA 2B63A 1K83A 2R4GA 3GTKA 1ZYRD 2YU9A 4NOLA 1SFOA 1TGOA 3K5LA 1IS1A 1WCMA 1WQHA 1ISEA 1Y1WA 2E2IA 2A68D 3HKZA 2E2HA 3MAQA 4H3TA 1LPQA 1GE9A 2JA6A 1EH1A 4NOMA 2F4QA 2A69D 3CQZA 3K58A 3K5NA 1A35A 4AYBA 5JSBB 5C9HA 1WQGA 5JSNB 1Y1VA 3K5MA 2CW0D 1EK8A 3GTLA 3GTGA 4FYDA 2BE5D 2PMZA 2A6HD 3IAYA 1TL8A 3SJRA 4IP8A 2WB1A 1SC7A 2JA5A 4EJ3A 1TWFA 4L8IA 5MLC9
chains in the Genus database with same CATH topology
3P9AA 2NVXA 4IP9A 1YNND 1YNJD 1I50A 4D3ZA 4QIWA 4KAWX 1SMYD 1TWGA 4Q5GA 5CQGA 2VUMA 2O5JD 1R5ZA 2B9SB 4GFQA 1TWAA 4KB2A 4KB4A 1A36A 1TWCA 4LMOA 4NOKA 3WVOA 4F3EA 3GTJA 4C2MA 4QCLA 2R7ZA 2NVYA 2Y0SA 1DD5A 1RRJA 1TWHA 3DU6A 3LF9A 1SEUA 1Q8IA 3GTQA 3LHPS 3KYLA 1T8IA 1A31A 3K59A 3K57A 1I3QA 3GTPA 4D3YA 1EJ9A 4OYDB 1R9TA 1HQMD 3M4AA 1Y698 1I6VD 2A6ED 3FKIA 3H0GA 4AHCA 3GTOA 1R49A 3DU5A 4JLRC 2R93A 1NH3A 3GTMA 4FXDA 2WAQA 3K5OA 4O26A 4FGUA 1RR8C 4KC6A 4AN8A 1V9MA 2JA7A 2R92A 1IW7D 1K4SA 1WQFA 4KDDA 4Q5VA 1MIUA 1K4TA 2B63A 1K83A 2R4GA 3GTKA 1ZYRD 2YU9A 4NOLA 1SFOA 1TGOA 3K5LA 1IS1A 1WCMA 1WQHA 1ISEA 1Y1WA 2E2IA 2A68D 3HKZA 2E2HA 3MAQA 4H3TA 1LPQA 1GE9A 2JA6A 1EH1A 4NOMA 2F4QA 2A69D 3CQZA 3K58A 3K5NA 1A35A 4AYBA 5JSBB 5C9HA 1WQGA 5JSNB 1Y1VA 3K5MA 2CW0D 1EK8A 3GTLA 3GTGA 4FYDA 2BE5D 2PMZA 2A6HD 3IAYA 1TL8A 3SJRA 4IP8A 2WB1A 1SC7A 2JA5A 4EJ3A 1TWFA 4L8IA 5MLC9
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EJ3 A;  3WVO A;  4AN8 A;  4H3T A;  4F3E A; 
#chains in the Genus database with same CATH topology
 3P9A A;  2NVX A;  4IP9 A;  1YNN D;  1YNJ D;  1I50 A;  4D3Z A;  4QIW A;  4KAW X;  1SMY D;  1TWG A;  4Q5G A;  5CQG A;  2VUM A;  2O5J D;  1R5Z A;  2B9S B;  4GFQ A;  1TWA A;  4KB2 A;  4KB4 A;  1A36 A;  1TWC A;  4LMO A;  4NOK A;  3WVO A;  4F3E A;  3GTJ A;  4C2M A;  4QCL A;  2R7Z A;  2NVY A;  2Y0S A;  1DD5 A;  1RRJ A;  1TWH A;  3DU6 A;  3LF9 A;  1SEU A;  1Q8I A;  3GTQ A;  3LHP S;  3KYL A;  1T8I A;  1A31 A;  3K59 A;  3K57 A;  1I3Q A;  3GTP A;  4D3Y A;  1EJ9 A;  4OYD B;  1R9T A;  1HQM D;  3M4A A;  1Y69 8;  1I6V D;  2A6E D;  3FKI A;  3H0G A;  4AHC A;  3GTO A;  1R49 A;  3DU5 A;  4JLR C;  2R93 A;  1NH3 A;  3GTM A;  4FXD A;  2WAQ A;  3K5O A;  4O26 A;  4FGU A;  1RR8 C;  4KC6 A;  4AN8 A;  1V9M A;  2JA7 A;  2R92 A;  1IW7 D;  1K4S A;  1WQF A;  4KDD A;  4Q5V A;  1MIU A;  1K4T A;  2B63 A;  1K83 A;  2R4G A;  3GTK A;  1ZYR D;  2YU9 A;  4NOL A;  1SFO A;  1TGO A;  3K5L A;  1IS1 A;  1WCM A;  1WQH A;  1ISE A;  1Y1W A;  2E2I A;  2A68 D;  3HKZ A;  2E2H A;  3MAQ A;  4H3T A;  1LPQ A;  1GE9 A;  2JA6 A;  1EH1 A;  4NOM A;  2F4Q A;  2A69 D;  3CQZ A;  3K58 A;  3K5N A;  1A35 A;  4AYB A;  5JSB B;  5C9H A;  1WQG A;  5JSN B;  1Y1V A;  3K5M A;  2CW0 D;  1EK8 A;  3GTL A;  3GTG A;  4FYD A;  2BE5 D;  2PMZ A;  2A6H D;  3IAY A;  1TL8 A;  3SJR A;  4IP8 A;  2WB1 A;  1SC7 A;  2JA5 A;  4EJ3 A;  1TWF A;  4L8I A;  5MLC 9; 
#chains in the Genus database with same CATH homology
 3P9A A;  2NVX A;  4IP9 A;  1YNN D;  1YNJ D;  1I50 A;  4D3Z A;  4QIW A;  4KAW X;  1SMY D;  1TWG A;  4Q5G A;  5CQG A;  2VUM A;  2O5J D;  1R5Z A;  2B9S B;  4GFQ A;  1TWA A;  4KB2 A;  4KB4 A;  1A36 A;  1TWC A;  4LMO A;  4NOK A;  3WVO A;  4F3E A;  3GTJ A;  4C2M A;  4QCL A;  2R7Z A;  2NVY A;  2Y0S A;  1DD5 A;  1RRJ A;  1TWH A;  3DU6 A;  3LF9 A;  1SEU A;  1Q8I A;  3GTQ A;  3LHP S;  3KYL A;  1T8I A;  1A31 A;  3K59 A;  3K57 A;  1I3Q A;  3GTP A;  4D3Y A;  1EJ9 A;  4OYD B;  1R9T A;  1HQM D;  3M4A A;  1Y69 8;  1I6V D;  2A6E D;  3FKI A;  3H0G A;  4AHC A;  3GTO A;  1R49 A;  3DU5 A;  4JLR C;  2R93 A;  1NH3 A;  3GTM A;  4FXD A;  2WAQ A;  3K5O A;  4O26 A;  4FGU A;  1RR8 C;  4KC6 A;  4AN8 A;  1V9M A;  2JA7 A;  2R92 A;  1IW7 D;  1K4S A;  1WQF A;  4KDD A;  4Q5V A;  1MIU A;  1K4T A;  2B63 A;  1K83 A;  2R4G A;  3GTK A;  1ZYR D;  2YU9 A;  4NOL A;  1SFO A;  1TGO A;  3K5L A;  1IS1 A;  1WCM A;  1WQH A;  1ISE A;  1Y1W A;  2E2I A;  2A68 D;  3HKZ A;  2E2H A;  3MAQ A;  4H3T A;  1LPQ A;  1GE9 A;  2JA6 A;  1EH1 A;  4NOM A;  2F4Q A;  2A69 D;  3CQZ A;  3K58 A;  3K5N A;  1A35 A;  4AYB A;  5JSB B;  5C9H A;  1WQG A;  5JSN B;  1Y1V A;  3K5M A;  2CW0 D;  1EK8 A;  3GTL A;  3GTG A;  4FYD A;  2BE5 D;  2PMZ A;  2A6H D;  3IAY A;  1TL8 A;  3SJR A;  4IP8 A;  2WB1 A;  1SC7 A;  2JA5 A;  4EJ3 A;  1TWF A;  4L8I A;  5MLC 9; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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