3WVOA

Crystal structure of thermobifida fusca cse1
Total Genus 168
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
168
sequence length
547
structure length
543
Chain Sequence
MTTDAPSFNLITQPWLPVQYRDGTEKELSLLEVFKQAPLLRRLVGDVPTQEFALLRLLLAILHDAIGGPEDSDEWAELWTQDEAEQQLPFDCIASYLEQYYHRFDLLHPTTPFFQVADLHTQKNDVFSLDRIVADVPNGELFFTMRARGVDRLSFAEAARWLVHAHAYDTSGIKSGAVGDPRAKGGKGYPQGVSWAGNLGGILVEGANLYETLLLNLVAFDTDNLIVTPEDRPAWRQPPTTAAPADDEELAQRPYGLCDLYTWQSRRIRLHYDADGVYGVLLAYGDPLAPHNKHNHEPMTAWRRSPAQEKKLKKPQVYLPREHDPTRSAWRGLGALVAGEASGAEQRGEAAAIVRPRILDWVARLVNEGFLPEDYFIRTRLIGVSYGTQQAVIDEIVDDHVAMAVVLLHERDSGLGRTAIKAVEDAEKAVTVLGGLAADLAKAAGADPETPRAAARDRGFGMLDGPFRTWLATLAPGTDATERRRAWQQKAHRIISDLGRQLVAEAGEAAWNKGKNTDVWLNASRADLKFRAELKKELPMATS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of Thermobifida fusca Cse1 reveals target DNA binding site
pubmed doi rcsb
molecule tags Cell invasion
source organism Thermobifida fusca
molecule keywords CRISPR-associated protein, Cse1 family
total genus 168
structure length 543
sequence length 547
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2014-06-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09481 CRISPR_Cse1 CRISPR-associated protein Cse1 (CRISPR_cse1)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.100 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 3wvoA02
4AN8A 4F3EA 4EJ3A 3WVOA 4H3TA
chains in the Genus database with same CATH superfamily
3LHPS 1K4SA 3K5LA 2YU9A 1EK8A 1A35A 4NOMA 2A6ED 4KB2A 1IW7D 1TL8A 4NOKA 1EJ9A 4L8IA 5JSNB 3GTQA 1V9MA 4EJ3A 3GTKA 1NH3A 3M4AA 3GTGA 4IP9A 4AHCA 4Q5VA 2VUMA 2E2IA 3K59A 2JA6A 3GTOA 1SC7A 1SMYD 3K5OA 3K57A 3K58A 1TWGA 4IP8A 1WQHA 1A31A 4GFQA 5C9HA 1YNND 3SJRA 1Y698 4C2MA 1I50A 1MIUA 1ISEA 1Q8IA 4FXDA 3GTPA 1A36A 4KAWX 1EH1A 3DU5A 4Q5GA 2B63A 1TWHA 4H3TA 1K4TA 1R49A 3H0GA 1Y1WA 3WVOA 1TWCA 4KB4A 4NOLA 5MLC9 2JA5A 3GTMA 2A68D 3P9AA 1Y1VA 2R93A 2WAQA 1YNJD 2O5JD 4AN8A 3MAQA 4KC6A 4KDDA 4LMOA 2R92A 4QIWA 1TWAA 1WQFA 2WB1A 3K5NA 4OYDB 2A6HD 1ZYRD 1TGOA 3IAYA 1IS1A 2NVXA 3LF9A 1GE9A 2CW0D 1WQGA 2BE5D 2NVYA 1I6VD 1SFOA 1I3QA 1T8IA 3GTJA 4QCLA 2E2HA 3CQZA 3FKIA 4FGUA 1HQMD 3HKZA 2JA7A 4JLRC 4D3YA 1TWFA 2F4QA 1R9TA 2R7ZA 5JSBB 2Y0SA 1R5ZA 4O26A 1K83A 3GTLA 4F3EA 3K5MA 1SEUA 3KYLA 1RR8C 1LPQA 2B9SB 2A69D 1RRJA 4AYBA 1DD5A 4FYDA 2R4GA 3DU6A 1WCMA 2PMZA 4D3ZA 5CQGA
chains in the Genus database with same CATH topology
3LHPS 1K4SA 3K5LA 2YU9A 1EK8A 1A35A 4NOMA 2A6ED 4KB2A 1IW7D 1TL8A 4NOKA 1EJ9A 4L8IA 5JSNB 3GTQA 1V9MA 4EJ3A 3GTKA 1NH3A 3M4AA 3GTGA 4IP9A 4AHCA 4Q5VA 2VUMA 2E2IA 3K59A 2JA6A 3GTOA 1SC7A 1SMYD 3K5OA 3K57A 3K58A 1TWGA 4IP8A 1WQHA 1A31A 4GFQA 5C9HA 1YNND 3SJRA 1Y698 4C2MA 1I50A 1MIUA 1ISEA 1Q8IA 4FXDA 3GTPA 1A36A 4KAWX 1EH1A 3DU5A 4Q5GA 2B63A 1TWHA 4H3TA 1K4TA 1R49A 3H0GA 1Y1WA 3WVOA 1TWCA 4KB4A 4NOLA 5MLC9 2JA5A 3GTMA 2A68D 3P9AA 1Y1VA 2R93A 2WAQA 1YNJD 2O5JD 4AN8A 3MAQA 4KC6A 4KDDA 4LMOA 2R92A 4QIWA 1TWAA 1WQFA 2WB1A 3K5NA 4OYDB 2A6HD 1ZYRD 1TGOA 3IAYA 1IS1A 2NVXA 3LF9A 1GE9A 2CW0D 1WQGA 2BE5D 2NVYA 1I6VD 1SFOA 1I3QA 1T8IA 3GTJA 4QCLA 2E2HA 3CQZA 3FKIA 4FGUA 1HQMD 3HKZA 2JA7A 4JLRC 4D3YA 1TWFA 2F4QA 1R9TA 2R7ZA 5JSBB 2Y0SA 1R5ZA 4O26A 1K83A 3GTLA 4F3EA 3K5MA 1SEUA 3KYLA 1RR8C 1LPQA 2B9SB 2A69D 1RRJA 4AYBA 1DD5A 4FYDA 2R4GA 3DU6A 1WCMA 2PMZA 4D3ZA 5CQGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AN8 A;  4F3E A;  4EJ3 A;  3WVO A;  4H3T A; 
#chains in the Genus database with same CATH topology
 3LHP S;  1K4S A;  3K5L A;  2YU9 A;  1EK8 A;  1A35 A;  4NOM A;  2A6E D;  4KB2 A;  1IW7 D;  1TL8 A;  4NOK A;  1EJ9 A;  4L8I A;  5JSN B;  3GTQ A;  1V9M A;  4EJ3 A;  3GTK A;  1NH3 A;  3M4A A;  3GTG A;  4IP9 A;  4AHC A;  4Q5V A;  2VUM A;  2E2I A;  3K59 A;  2JA6 A;  3GTO A;  1SC7 A;  1SMY D;  3K5O A;  3K57 A;  3K58 A;  1TWG A;  4IP8 A;  1WQH A;  1A31 A;  4GFQ A;  5C9H A;  1YNN D;  3SJR A;  1Y69 8;  4C2M A;  1I50 A;  1MIU A;  1ISE A;  1Q8I A;  4FXD A;  3GTP A;  1A36 A;  4KAW X;  1EH1 A;  3DU5 A;  4Q5G A;  2B63 A;  1TWH A;  4H3T A;  1K4T A;  1R49 A;  3H0G A;  1Y1W A;  3WVO A;  1TWC A;  4KB4 A;  4NOL A;  5MLC 9;  2JA5 A;  3GTM A;  2A68 D;  3P9A A;  1Y1V A;  2R93 A;  2WAQ A;  1YNJ D;  2O5J D;  4AN8 A;  3MAQ A;  4KC6 A;  4KDD A;  4LMO A;  2R92 A;  4QIW A;  1TWA A;  1WQF A;  2WB1 A;  3K5N A;  4OYD B;  2A6H D;  1ZYR D;  1TGO A;  3IAY A;  1IS1 A;  2NVX A;  3LF9 A;  1GE9 A;  2CW0 D;  1WQG A;  2BE5 D;  2NVY A;  1I6V D;  1SFO A;  1I3Q A;  1T8I A;  3GTJ A;  4QCL A;  2E2H A;  3CQZ A;  3FKI A;  4FGU A;  1HQM D;  3HKZ A;  2JA7 A;  4JLR C;  4D3Y A;  1TWF A;  2F4Q A;  1R9T A;  2R7Z A;  5JSB B;  2Y0S A;  1R5Z A;  4O26 A;  1K83 A;  3GTL A;  4F3E A;  3K5M A;  1SEU A;  3KYL A;  1RR8 C;  1LPQ A;  2B9S B;  2A69 D;  1RRJ A;  4AYB A;  1DD5 A;  4FYD A;  2R4G A;  3DU6 A;  1WCM A;  2PMZ A;  4D3Z A;  5CQG A; 
#chains in the Genus database with same CATH homology
 3LHP S;  1K4S A;  3K5L A;  2YU9 A;  1EK8 A;  1A35 A;  4NOM A;  2A6E D;  4KB2 A;  1IW7 D;  1TL8 A;  4NOK A;  1EJ9 A;  4L8I A;  5JSN B;  3GTQ A;  1V9M A;  4EJ3 A;  3GTK A;  1NH3 A;  3M4A A;  3GTG A;  4IP9 A;  4AHC A;  4Q5V A;  2VUM A;  2E2I A;  3K59 A;  2JA6 A;  3GTO A;  1SC7 A;  1SMY D;  3K5O A;  3K57 A;  3K58 A;  1TWG A;  4IP8 A;  1WQH A;  1A31 A;  4GFQ A;  5C9H A;  1YNN D;  3SJR A;  1Y69 8;  4C2M A;  1I50 A;  1MIU A;  1ISE A;  1Q8I A;  4FXD A;  3GTP A;  1A36 A;  4KAW X;  1EH1 A;  3DU5 A;  4Q5G A;  2B63 A;  1TWH A;  4H3T A;  1K4T A;  1R49 A;  3H0G A;  1Y1W A;  3WVO A;  1TWC A;  4KB4 A;  4NOL A;  5MLC 9;  2JA5 A;  3GTM A;  2A68 D;  3P9A A;  1Y1V A;  2R93 A;  2WAQ A;  1YNJ D;  2O5J D;  4AN8 A;  3MAQ A;  4KC6 A;  4KDD A;  4LMO A;  2R92 A;  4QIW A;  1TWA A;  1WQF A;  2WB1 A;  3K5N A;  4OYD B;  2A6H D;  1ZYR D;  1TGO A;  3IAY A;  1IS1 A;  2NVX A;  3LF9 A;  1GE9 A;  2CW0 D;  1WQG A;  2BE5 D;  2NVY A;  1I6V D;  1SFO A;  1I3Q A;  1T8I A;  3GTJ A;  4QCL A;  2E2H A;  3CQZ A;  3FKI A;  4FGU A;  1HQM D;  3HKZ A;  2JA7 A;  4JLR C;  4D3Y A;  1TWF A;  2F4Q A;  1R9T A;  2R7Z A;  5JSB B;  2Y0S A;  1R5Z A;  4O26 A;  1K83 A;  3GTL A;  4F3E A;  3K5M A;  1SEU A;  3KYL A;  1RR8 C;  1LPQ A;  2B9S B;  2A69 D;  1RRJ A;  4AYB A;  1DD5 A;  4FYD A;  2R4G A;  3DU6 A;  1WCM A;  2PMZ A;  4D3Z A;  5CQG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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