3ZV0 | Genus

Total Genus 33

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	33
sequence length	161
structure length	152
Chain Sequence	SEWPLLLKNFDKLLVRSGSPLKRDLKSYISSGPLETLLVGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEIVLITTKGEAIAVAIAQMSTVDLASCDHGVVASVKRCIMERDLYPRRWGLGPVAQKKKQMKADGKLDKYGRVNEN

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Cell cycle
source organism	Saccharomyces cerevisiae
publication title	The H/Aca Rnp Assembly Factor Shq1 Functions as an RNA Mimic. pubmed doi rcsb
molecule keywords	PROTEIN SHQ1
total genus	33
structure length	152
sequence length	161
chains with identical sequence	D
ec nomenclature	ec 5.4.99.-:
pdb deposition date	2011-07-22

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
C	PF01472	PUA	PUA domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.30.130.70	Mainly Beta	Roll	Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4	Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4	3zv0C01

2HVYA 3HJWA 3LWOA 3LWQA 2RFKA 3HAXA 2AUSA 2APOA 3LWVA 3MQKA 3U28A 3ZV0C 3HJYA 3LWRA 3LWPA 2EY4A
chains in the Genus database with same CATH superfamily

2FRXA 1Q7HA 1WK2A 1UOYA 3M6WA 3HAXA 1ZE2A 2AUSA 1SGVA 1R3EA 1ZE1A 3M6VA 1WXXA 1XNEA 1IT8A 1ZBOA 3D79A 2Q07A 1IQ8A 3M6XA 2EY4A 4DMGA 2CX0A 3HJWA 3LDFA 3M6UA 4Q1TA 3M4XA 1J2BA 4CI1B 3M65A 3U28A 3ZV0C 4CI2B 3HJYA 2J5VA 3LWRA 4CI3B 4TZ4C 2APOA 2KKUA 3UAIA 2HVYA 3LWOA 2ANEA 2E5OA 1ZL3A 3MQKA 2B78A 1K8WA 2AB4A 3IUWA 2CX1A 3LWPA 2CWWA 1WXWA 2Z0TA 3LWVA 3LJCA 3VSEA 3LWQA 1R3FA 1S04A 1SQWA 2DP9A 1ZS7A 2P38A 3C0KA 2J5TA 1IT7A 1T5YA 2RFKA 1TE7A 2AS0A
chains in the Genus database with same CATH topology

2FRXA 3M6WA 1UOYA 3HAXA 2AUSA 3M6VA 3M6XA 2EY4A 3HJWA 3M6UA 3M4XA 3U28A 3ZV0C 3HJYA 3LWRA 2APOA 2HVYA 3LWOA 3MQKA 3LWPA 3LWVA 3LWQA 2RFKA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2HVY A;  3HJW A;  3LWO A;  3LWQ A;  2RFK A;  3HAX A;  2AUS A;  2APO A;  3LWV A;  3MQK A;  3U28 A;  3ZV0 C;  3HJY A;  3LWR A;  3LWP A;  2EY4 A; 
#chains in the Genus database with same CATH topology
 2FRX A;  1Q7H A;  1WK2 A;  1UOY A;  3M6W A;  3HAX A;  1ZE2 A;  2AUS A;  1SGV A;  1R3E A;  1ZE1 A;  3M6V A;  1WXX A;  1XNE A;  1IT8 A;  1ZBO A;  3D79 A;  2Q07 A;  1IQ8 A;  3M6X A;  2EY4 A;  4DMG A;  2CX0 A;  3HJW A;  3LDF A;  3M6U A;  4Q1T A;  3M4X A;  1J2B A;  4CI1 B;  3M65 A;  3U28 A;  3ZV0 C;  4CI2 B;  3HJY A;  2J5V A;  3LWR A;  4CI3 B;  4TZ4 C;  2APO A;  2KKU A;  3UAI A;  2HVY A;  3LWO A;  2ANE A;  2E5O A;  1ZL3 A;  3MQK A;  2B78 A;  1K8W A;  2AB4 A;  3IUW A;  2CX1 A;  3LWP A;  2CWW A;  1WXW A;  2Z0T A;  3LWV A;  3LJC A;  3VSE A;  3LWQ A;  1R3F A;  1S04 A;  1SQW A;  2DP9 A;  1ZS7 A;  2P38 A;  3C0K A;  2J5T A;  1IT7 A;  1T5Y A;  2RFK A;  1TE7 A;  2AS0 A; 
#chains in the Genus database with same CATH homology
 2FRX A;  3M6W A;  1UOY A;  3HAX A;  2AUS A;  3M6V A;  3M6X A;  2EY4 A;  3HJW A;  3M6U A;  3M4X A;  3U28 A;  3ZV0 C;  3HJY A;  3LWR A;  2APO A;  2HVY A;  3LWO A;  3MQK A;  3LWP A;  3LWV A;  3LWQ A;  2RFK A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3ZV0C

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations