4EJ3A

Crystal structure of a crispr associated protein from thermus thermophilus hb8
Total Genus 148
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
493
structure length
467
Chain Sequence
EKFNLIDEPWIPVLKGGRVVEVGIGEALLRAHEFARIETPSPLEEAVLHRLLLAVLHRALSGPRCPEDVLDWWRKGGFPQDPIRDYLNRFRDRFFLFHPEAPFLQVADLPEENPLPWSKLLPELNLPKATYAQAARALLVHQAFAPGGLLRRYGVGSAKDAPVARPALFLPTGQNLLETLLLNLVPYTPEDDAPIWEVPPLRLGDLEGARTKWPLTGRTRVYTWPARGVRLLDEGDGVRFMGYGPGVEPLEATHRDPMVAQRLDAKGNLLVLRLSEERSFWRDFSAMLPRQGGKVAATLEHAENLQGELEDEGLEGRITLRVLGQVSDQAKVLDIRREVYPLPSGLLTPKAEENLEKALKMAEELGQGLKHLAQEVAKAVVYLEELTKLANSLPLERLYWHALDGAFPRFFARVEEEASLDLWREALRGAALEAWKATRRFLGTGARHLKALAQGEQEFGRLLGELG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a CRISPR associated protein from Thermus thermophilus HB8
rcsb
molecule tags Signaling protein
source organism Thermus thermophilus
molecule keywords CRISPR associated protein
total genus 148
structure length 467
sequence length 493
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-04-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09481 CRISPR_Cse1 CRISPR-associated protein Cse1 (CRISPR_cse1)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.100 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 4ej3A02
4EJ3A 4H3TA 3WVOA 4AN8A 4F3EA
chains in the Genus database with same CATH superfamily
4FXDA 2F4QA 5C9HA 4NOMA 4GFQA 1Y698 4C2MA 1R9TA 4O26A 1YNND 5JSBB 4KAWX 1Y1VA 2A6HD 3GTJA 1TWFA 1YNJD 4NOLA 3FKIA 3KYLA 2WAQA 2YU9A 2R92A 4KDDA 3P9AA 1EH1A 3GTGA 2R7ZA 3WVOA 1TWCA 1TL8A 1GE9A 1IW7D 1NH3A 2NVXA 2B9SB 4LMOA 2JA5A 1IS1A 3K5LA 3GTMA 2BE5D 3K5OA 4EJ3A 4JLRC 3LF9A 2O5JD 1TWAA 1EJ9A 4KB2A 1LPQA 3K5NA 1WQHA 1SFOA 1V9MA 1K4SA 2R4GA 1A36A 4QIWA 1T8IA 4KC6A 2JA6A 4QCLA 1SEUA 1HQMD 3GTOA 3K58A 2CW0D 1R5ZA 1K83A 4L8IA 2E2HA 1TGOA 2E2IA 2NVYA 2R93A 4OYDB 1TWHA 5JSNB 1Y1WA 2PMZA 1RRJA 2WB1A 2A6ED 3K57A 3GTLA 2B63A 4Q5VA 4F3EA 1A31A 2JA7A 5CQGA 1ISEA 3H0GA 3IAYA 1RR8C 3M4AA 4AHCA 3K5MA 3K59A 3DU5A 2Y0SA 4AYBA 1SMYD 3GTKA 1EK8A 1R49A 2A69D 3DU6A 4D3ZA 5MLC9 4FYDA 1WQGA 4FGUA 4Q5GA 1I6VD 3LHPS 4IP9A 4IP8A 4NOKA 1I50A 3HKZA 4AN8A 1A35A 1ZYRD 4D3YA 3CQZA 2A68D 1DD5A 1Q8IA 1MIUA 3GTQA 1WQFA 1SC7A 4KB4A 3SJRA 3GTPA 2VUMA 1TWGA 1WCMA 4H3TA 3MAQA 1I3QA 1K4TA
chains in the Genus database with same CATH topology
4FXDA 2F4QA 5C9HA 4NOMA 4GFQA 1Y698 4C2MA 1R9TA 4O26A 1YNND 5JSBB 4KAWX 1Y1VA 2A6HD 3GTJA 1TWFA 1YNJD 4NOLA 3FKIA 3KYLA 2WAQA 2YU9A 2R92A 4KDDA 3P9AA 1EH1A 3GTGA 2R7ZA 3WVOA 1TWCA 1TL8A 1GE9A 1IW7D 1NH3A 2NVXA 2B9SB 4LMOA 2JA5A 1IS1A 3K5LA 3GTMA 2BE5D 3K5OA 4EJ3A 4JLRC 3LF9A 2O5JD 1TWAA 1EJ9A 4KB2A 1LPQA 3K5NA 1WQHA 1SFOA 1V9MA 1K4SA 2R4GA 1A36A 4QIWA 1T8IA 4KC6A 2JA6A 4QCLA 1SEUA 1HQMD 3GTOA 3K58A 2CW0D 1R5ZA 1K83A 4L8IA 2E2HA 1TGOA 2E2IA 2NVYA 2R93A 4OYDB 1TWHA 5JSNB 1Y1WA 2PMZA 1RRJA 2WB1A 2A6ED 3K57A 3GTLA 2B63A 4Q5VA 4F3EA 1A31A 2JA7A 5CQGA 1ISEA 3H0GA 3IAYA 1RR8C 3M4AA 4AHCA 3K5MA 3K59A 3DU5A 2Y0SA 4AYBA 1SMYD 3GTKA 1EK8A 1R49A 2A69D 3DU6A 4D3ZA 5MLC9 4FYDA 1WQGA 4FGUA 4Q5GA 1I6VD 3LHPS 4IP9A 4IP8A 4NOKA 1I50A 3HKZA 4AN8A 1A35A 1ZYRD 4D3YA 3CQZA 2A68D 1DD5A 1Q8IA 1MIUA 3GTQA 1WQFA 1SC7A 4KB4A 3SJRA 3GTPA 2VUMA 1TWGA 1WCMA 4H3TA 3MAQA 1I3QA 1K4TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EJ3 A;  4H3T A;  3WVO A;  4AN8 A;  4F3E A; 
#chains in the Genus database with same CATH topology
 4FXD A;  2F4Q A;  5C9H A;  4NOM A;  4GFQ A;  1Y69 8;  4C2M A;  1R9T A;  4O26 A;  1YNN D;  5JSB B;  4KAW X;  1Y1V A;  2A6H D;  3GTJ A;  1TWF A;  1YNJ D;  4NOL A;  3FKI A;  3KYL A;  2WAQ A;  2YU9 A;  2R92 A;  4KDD A;  3P9A A;  1EH1 A;  3GTG A;  2R7Z A;  3WVO A;  1TWC A;  1TL8 A;  1GE9 A;  1IW7 D;  1NH3 A;  2NVX A;  2B9S B;  4LMO A;  2JA5 A;  1IS1 A;  3K5L A;  3GTM A;  2BE5 D;  3K5O A;  4EJ3 A;  4JLR C;  3LF9 A;  2O5J D;  1TWA A;  1EJ9 A;  4KB2 A;  1LPQ A;  3K5N A;  1WQH A;  1SFO A;  1V9M A;  1K4S A;  2R4G A;  1A36 A;  4QIW A;  1T8I A;  4KC6 A;  2JA6 A;  4QCL A;  1SEU A;  1HQM D;  3GTO A;  3K58 A;  2CW0 D;  1R5Z A;  1K83 A;  4L8I A;  2E2H A;  1TGO A;  2E2I A;  2NVY A;  2R93 A;  4OYD B;  1TWH A;  5JSN B;  1Y1W A;  2PMZ A;  1RRJ A;  2WB1 A;  2A6E D;  3K57 A;  3GTL A;  2B63 A;  4Q5V A;  4F3E A;  1A31 A;  2JA7 A;  5CQG A;  1ISE A;  3H0G A;  3IAY A;  1RR8 C;  3M4A A;  4AHC A;  3K5M A;  3K59 A;  3DU5 A;  2Y0S A;  4AYB A;  1SMY D;  3GTK A;  1EK8 A;  1R49 A;  2A69 D;  3DU6 A;  4D3Z A;  5MLC 9;  4FYD A;  1WQG A;  4FGU A;  4Q5G A;  1I6V D;  3LHP S;  4IP9 A;  4IP8 A;  4NOK A;  1I50 A;  3HKZ A;  4AN8 A;  1A35 A;  1ZYR D;  4D3Y A;  3CQZ A;  2A68 D;  1DD5 A;  1Q8I A;  1MIU A;  3GTQ A;  1WQF A;  1SC7 A;  4KB4 A;  3SJR A;  3GTP A;  2VUM A;  1TWG A;  1WCM A;  4H3T A;  3MAQ A;  1I3Q A;  1K4T A; 
#chains in the Genus database with same CATH homology
 4FXD A;  2F4Q A;  5C9H A;  4NOM A;  4GFQ A;  1Y69 8;  4C2M A;  1R9T A;  4O26 A;  1YNN D;  5JSB B;  4KAW X;  1Y1V A;  2A6H D;  3GTJ A;  1TWF A;  1YNJ D;  4NOL A;  3FKI A;  3KYL A;  2WAQ A;  2YU9 A;  2R92 A;  4KDD A;  3P9A A;  1EH1 A;  3GTG A;  2R7Z A;  3WVO A;  1TWC A;  1TL8 A;  1GE9 A;  1IW7 D;  1NH3 A;  2NVX A;  2B9S B;  4LMO A;  2JA5 A;  1IS1 A;  3K5L A;  3GTM A;  2BE5 D;  3K5O A;  4EJ3 A;  4JLR C;  3LF9 A;  2O5J D;  1TWA A;  1EJ9 A;  4KB2 A;  1LPQ A;  3K5N A;  1WQH A;  1SFO A;  1V9M A;  1K4S A;  2R4G A;  1A36 A;  4QIW A;  1T8I A;  4KC6 A;  2JA6 A;  4QCL A;  1SEU A;  1HQM D;  3GTO A;  3K58 A;  2CW0 D;  1R5Z A;  1K83 A;  4L8I A;  2E2H A;  1TGO A;  2E2I A;  2NVY A;  2R93 A;  4OYD B;  1TWH A;  5JSN B;  1Y1W A;  2PMZ A;  1RRJ A;  2WB1 A;  2A6E D;  3K57 A;  3GTL A;  2B63 A;  4Q5V A;  4F3E A;  1A31 A;  2JA7 A;  5CQG A;  1ISE A;  3H0G A;  3IAY A;  1RR8 C;  3M4A A;  4AHC A;  3K5M A;  3K59 A;  3DU5 A;  2Y0S A;  4AYB A;  1SMY D;  3GTK A;  1EK8 A;  1R49 A;  2A69 D;  3DU6 A;  4D3Z A;  5MLC 9;  4FYD A;  1WQG A;  4FGU A;  4Q5G A;  1I6V D;  3LHP S;  4IP9 A;  4IP8 A;  4NOK A;  1I50 A;  3HKZ A;  4AN8 A;  1A35 A;  1ZYR D;  4D3Y A;  3CQZ A;  2A68 D;  1DD5 A;  1Q8I A;  1MIU A;  3GTQ A;  1WQF A;  1SC7 A;  4KB4 A;  3SJR A;  3GTP A;  2VUM A;  1TWG A;  1WCM A;  4H3T A;  3MAQ A;  1I3Q A;  1K4T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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