4EJ3A

Crystal structure of a crispr associated protein from thermus thermophilus hb8
Total Genus 148
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
493
structure length
467
Chain Sequence
EKFNLIDEPWIPVLKGGRVVEVGIGEALLRAHEFARIETPSPLEEAVLHRLLLAVLHRALSGPRCPEDVLDWWRKGGFPQDPIRDYLNRFRDRFFLFHPEAPFLQVADLPEENPLPWSKLLPELNLPKATYAQAARALLVHQAFAPGGLLRRYGVGSAKDAPVARPALFLPTGQNLLETLLLNLVPYTPEDDAPIWEVPPLRLGDLEGARTKWPLTGRTRVYTWPARGVRLLDEGDGVRFMGYGPGVEPLEATHRDPMVAQRLDAKGNLLVLRLSEERSFWRDFSAMLPRQGGKVAATLEHAENLQGELEDEGLEGRITLRVLGQVSDQAKVLDIRREVYPLPSGLLTPKAEENLEKALKMAEELGQGLKHLAQEVAKAVVYLEELTKLANSLPLERLYWHALDGAFPRFFARVEEEASLDLWREALRGAALEAWKATRRFLGTGARHLKALAQGEQEFGRLLGELG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a CRISPR associated protein from Thermus thermophilus HB8
rcsb
molecule tags Signaling protein
source organism Thermus thermophilus
molecule keywords CRISPR associated protein
total genus 148
structure length 467
sequence length 493
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-04-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09481 CRISPR_Cse1 CRISPR-associated protein Cse1 (CRISPR_cse1)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.100 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 4ej3A02
4H3TA 3WVOA 4F3EA 4AN8A 4EJ3A
chains in the Genus database with same CATH superfamily
3LF9A 4H3TA 3GTJA 1NH3A 4D3ZA 4AYBA 2F4QA 2A68D 1R5ZA 4L8IA 3K59A 4KAWX 1YNND 5MLC9 4O26A 4GFQA 1Y1WA 2E2IA 3K57A 1R49A 2B9SB 2R93A 3K58A 2B63A 1TWCA 4NOKA 1EJ9A 2WB1A 3MAQA 3CQZA 4D3YA 1Q8IA 2WAQA 2VUMA 4QCLA 4IP9A 3WVOA 3IAYA 1GE9A 1SC7A 1SFOA 1K83A 3H0GA 1I3QA 4AN8A 1TWFA 3DU6A 4NOMA 1TGOA 5JSBB 3GTOA 1TWHA 1TWGA 1HQMD 4AHCA 1DD5A 1MIUA 4IP8A 4KB2A 3GTQA 4QIWA 2R7ZA 4Q5GA 4OYDB 3GTGA 1SEUA 2PMZA 3K5MA 1EK8A 2A6ED 1A36A 3GTMA 2O5JD 1I6VD 1Y698 1EH1A 4KC6A 4EJ3A 1LPQA 1WQHA 2JA5A 1ZYRD 4C2MA 3K5OA 4FYDA 2JA6A 5C9HA 2E2HA 3LHPS 3M4AA 1TL8A 2YU9A 4F3EA 3K5NA 1A35A 4FXDA 3SJRA 3K5LA 1R9TA 2Y0SA 2BE5D 3GTLA 3KYLA 1I50A 2R92A 4Q5VA 2A69D 1WCMA 4KDDA 5CQGA 1V9MA 3DU5A 4KB4A 1IS1A 1TWAA 1RR8C 2NVXA 2A6HD 3GTKA 1K4SA 3GTPA 1WQGA 5JSNB 2R4GA 1SMYD 1Y1VA 3FKIA 3P9AA 4FGUA 1K4TA 1ISEA 4LMOA 2NVYA 2JA7A 2CW0D 3HKZA 1WQFA 1A31A 1RRJA 1IW7D 1YNJD 4NOLA 1T8IA 4JLRC
chains in the Genus database with same CATH topology
3LF9A 4H3TA 3GTJA 1NH3A 4D3ZA 4AYBA 2F4QA 2A68D 1R5ZA 4L8IA 3K59A 4KAWX 1YNND 5MLC9 4O26A 4GFQA 1Y1WA 2E2IA 3K57A 1R49A 2B9SB 2R93A 3K58A 2B63A 1TWCA 4NOKA 1EJ9A 2WB1A 3MAQA 3CQZA 4D3YA 1Q8IA 2WAQA 2VUMA 4QCLA 4IP9A 3WVOA 3IAYA 1GE9A 1SC7A 1SFOA 1K83A 3H0GA 1I3QA 4AN8A 1TWFA 3DU6A 4NOMA 1TGOA 5JSBB 3GTOA 1TWHA 1TWGA 1HQMD 4AHCA 1DD5A 1MIUA 4IP8A 4KB2A 3GTQA 4QIWA 2R7ZA 4Q5GA 4OYDB 3GTGA 1SEUA 2PMZA 3K5MA 1EK8A 2A6ED 1A36A 3GTMA 2O5JD 1I6VD 1Y698 1EH1A 4KC6A 4EJ3A 1LPQA 1WQHA 2JA5A 1ZYRD 4C2MA 3K5OA 4FYDA 2JA6A 5C9HA 2E2HA 3LHPS 3M4AA 1TL8A 2YU9A 4F3EA 3K5NA 1A35A 4FXDA 3SJRA 3K5LA 1R9TA 2Y0SA 2BE5D 3GTLA 3KYLA 1I50A 2R92A 4Q5VA 2A69D 1WCMA 4KDDA 5CQGA 1V9MA 3DU5A 4KB4A 1IS1A 1TWAA 1RR8C 2NVXA 2A6HD 3GTKA 1K4SA 3GTPA 1WQGA 5JSNB 2R4GA 1SMYD 1Y1VA 3FKIA 3P9AA 4FGUA 1K4TA 1ISEA 4LMOA 2NVYA 2JA7A 2CW0D 3HKZA 1WQFA 1A31A 1RRJA 1IW7D 1YNJD 4NOLA 1T8IA 4JLRC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4H3T A;  3WVO A;  4F3E A;  4AN8 A;  4EJ3 A; 
#chains in the Genus database with same CATH topology
 3LF9 A;  4H3T A;  3GTJ A;  1NH3 A;  4D3Z A;  4AYB A;  2F4Q A;  2A68 D;  1R5Z A;  4L8I A;  3K59 A;  4KAW X;  1YNN D;  5MLC 9;  4O26 A;  4GFQ A;  1Y1W A;  2E2I A;  3K57 A;  1R49 A;  2B9S B;  2R93 A;  3K58 A;  2B63 A;  1TWC A;  4NOK A;  1EJ9 A;  2WB1 A;  3MAQ A;  3CQZ A;  4D3Y A;  1Q8I A;  2WAQ A;  2VUM A;  4QCL A;  4IP9 A;  3WVO A;  3IAY A;  1GE9 A;  1SC7 A;  1SFO A;  1K83 A;  3H0G A;  1I3Q A;  4AN8 A;  1TWF A;  3DU6 A;  4NOM A;  1TGO A;  5JSB B;  3GTO A;  1TWH A;  1TWG A;  1HQM D;  4AHC A;  1DD5 A;  1MIU A;  4IP8 A;  4KB2 A;  3GTQ A;  4QIW A;  2R7Z A;  4Q5G A;  4OYD B;  3GTG A;  1SEU A;  2PMZ A;  3K5M A;  1EK8 A;  2A6E D;  1A36 A;  3GTM A;  2O5J D;  1I6V D;  1Y69 8;  1EH1 A;  4KC6 A;  4EJ3 A;  1LPQ A;  1WQH A;  2JA5 A;  1ZYR D;  4C2M A;  3K5O A;  4FYD A;  2JA6 A;  5C9H A;  2E2H A;  3LHP S;  3M4A A;  1TL8 A;  2YU9 A;  4F3E A;  3K5N A;  1A35 A;  4FXD A;  3SJR A;  3K5L A;  1R9T A;  2Y0S A;  2BE5 D;  3GTL A;  3KYL A;  1I50 A;  2R92 A;  4Q5V A;  2A69 D;  1WCM A;  4KDD A;  5CQG A;  1V9M A;  3DU5 A;  4KB4 A;  1IS1 A;  1TWA A;  1RR8 C;  2NVX A;  2A6H D;  3GTK A;  1K4S A;  3GTP A;  1WQG A;  5JSN B;  2R4G A;  1SMY D;  1Y1V A;  3FKI A;  3P9A A;  4FGU A;  1K4T A;  1ISE A;  4LMO A;  2NVY A;  2JA7 A;  2CW0 D;  3HKZ A;  1WQF A;  1A31 A;  1RRJ A;  1IW7 D;  1YNJ D;  4NOL A;  1T8I A;  4JLR C; 
#chains in the Genus database with same CATH homology
 3LF9 A;  4H3T A;  3GTJ A;  1NH3 A;  4D3Z A;  4AYB A;  2F4Q A;  2A68 D;  1R5Z A;  4L8I A;  3K59 A;  4KAW X;  1YNN D;  5MLC 9;  4O26 A;  4GFQ A;  1Y1W A;  2E2I A;  3K57 A;  1R49 A;  2B9S B;  2R93 A;  3K58 A;  2B63 A;  1TWC A;  4NOK A;  1EJ9 A;  2WB1 A;  3MAQ A;  3CQZ A;  4D3Y A;  1Q8I A;  2WAQ A;  2VUM A;  4QCL A;  4IP9 A;  3WVO A;  3IAY A;  1GE9 A;  1SC7 A;  1SFO A;  1K83 A;  3H0G A;  1I3Q A;  4AN8 A;  1TWF A;  3DU6 A;  4NOM A;  1TGO A;  5JSB B;  3GTO A;  1TWH A;  1TWG A;  1HQM D;  4AHC A;  1DD5 A;  1MIU A;  4IP8 A;  4KB2 A;  3GTQ A;  4QIW A;  2R7Z A;  4Q5G A;  4OYD B;  3GTG A;  1SEU A;  2PMZ A;  3K5M A;  1EK8 A;  2A6E D;  1A36 A;  3GTM A;  2O5J D;  1I6V D;  1Y69 8;  1EH1 A;  4KC6 A;  4EJ3 A;  1LPQ A;  1WQH A;  2JA5 A;  1ZYR D;  4C2M A;  3K5O A;  4FYD A;  2JA6 A;  5C9H A;  2E2H A;  3LHP S;  3M4A A;  1TL8 A;  2YU9 A;  4F3E A;  3K5N A;  1A35 A;  4FXD A;  3SJR A;  3K5L A;  1R9T A;  2Y0S A;  2BE5 D;  3GTL A;  3KYL A;  1I50 A;  2R92 A;  4Q5V A;  2A69 D;  1WCM A;  4KDD A;  5CQG A;  1V9M A;  3DU5 A;  4KB4 A;  1IS1 A;  1TWA A;  1RR8 C;  2NVX A;  2A6H D;  3GTK A;  1K4S A;  3GTP A;  1WQG A;  5JSN B;  2R4G A;  1SMY D;  1Y1V A;  3FKI A;  3P9A A;  4FGU A;  1K4T A;  1ISE A;  4LMO A;  2NVY A;  2JA7 A;  2CW0 D;  3HKZ A;  1WQF A;  1A31 A;  1RRJ A;  1IW7 D;  1YNJ D;  4NOL A;  1T8I A;  4JLR C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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