4IP9A

Structure of native human serum amyloid a1
Total Genus 41

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
104
structure length
104
Chain Sequence
RSFFSFLGEAFDGARDMWRAYSDMREANYIGSDKYFHARGNYDAAKRGPGGVWAAEAISDARENIQRFFGHGAEDSLADQAANEWGRSGKDPNHFRPAGLPEKY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (32-47)TII1 (29-32)AH3 (49-69)3H1 (92-95)EMPTYTI1 (97-100)AH1 (1-27)AH4 (73-88)Updating...
connected with : NaN
molecule tags Protein binding
source organism Homo sapiens
publication title Structural mechanism of serum amyloid A-mediated inflammatory amyloidosis.
pubmed doi rcsb
molecule keywords Serum amyloid A-1 protein
total genus 41
structure length 104
sequence length 104
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-01-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00277 SAA Serum amyloid A protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.110 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 4ip9A00
4Q5GA 4IP8A 4IP9A
chains in the Genus database with same CATH superfamily
3K58A 1TGOA 3K5MA 1A31A 3GTLA 1GE9A 3SJRA 4C2MA 1TWAA 1I50A 1WQHA 3DU5A 1A35A 1K83A 2B9SB 1NH3A 4GFQA 4NOKA 4L8IA 3M4AA 1A36A 1RR8C 2NVXA 1WQFA 1R5ZA 2A68D 2PMZA 2WB1A 4AN8A 4IP8A 3K5NA 3HKZA 5C9HA 3FKIA 4KDDA 4NOLA 1SEUA 4IP9A 3WVOA 1SMYD 2BE5D 3K5LA 4KB2A 3LHPS 1I3QA 1YNND 1RRJA 4O26A 2NVYA 5CQGA 2F4QA 1WQGA 1HQMD 3GTMA 1Q8IA 3K5OA 2WAQA 3LF9A 3IAYA 1R9TA 1ZYRD 4D3ZA 4D3YA 1TL8A 1IS1A 2JA6A 4FGUA 1TWCA 2A6ED 2CW0D 3H0GA 1MIUA 2E2HA 1SC7A 4FYDA 4NOMA 2JA5A 1EK8A 4Q5GA 1EH1A 1WCMA 4KB4A 1TWHA 4F3EA 1TWFA 2R7ZA 1ISEA 4AYBA 2A6HD 5MLC9 3P9AA 1LPQA 2Y0SA 4OYDB 1YNJD 3GTPA 2VUMA 4H3TA 4LMOA 3DU6A 5JSBB 4FXDA 4QIWA 2R92A 1Y1WA 1K4SA 2O5JD 4Q5VA 4KAWX 1R49A 2A69D 4QCLA 3MAQA 1IW7D 1EJ9A 1I6VD 2E2IA 1Y698 2R4GA 3KYLA 1K4TA 1Y1VA 1V9MA 3CQZA 1T8IA 5JSNB 3GTQA 2JA7A 1TWGA 4AHCA 3GTGA 3K59A 2B63A 4EJ3A 3GTKA 2R93A 3GTOA 1DD5A 3GTJA 4JLRC 4KC6A 3K57A 2YU9A 1SFOA
chains in the Genus database with same CATH topology
3K58A 1TGOA 3K5MA 1A31A 3GTLA 1GE9A 3SJRA 4C2MA 1TWAA 1I50A 1WQHA 3DU5A 1A35A 1K83A 2B9SB 1NH3A 4GFQA 4NOKA 4L8IA 3M4AA 1A36A 1RR8C 2NVXA 1WQFA 1R5ZA 2A68D 2PMZA 2WB1A 4AN8A 4IP8A 3K5NA 3HKZA 5C9HA 3FKIA 4KDDA 4NOLA 1SEUA 4IP9A 3WVOA 1SMYD 2BE5D 3K5LA 4KB2A 3LHPS 1I3QA 1YNND 1RRJA 4O26A 2NVYA 5CQGA 2F4QA 1WQGA 1HQMD 3GTMA 1Q8IA 3K5OA 2WAQA 3LF9A 3IAYA 1R9TA 1ZYRD 4D3ZA 4D3YA 1TL8A 1IS1A 2JA6A 4FGUA 1TWCA 2A6ED 2CW0D 3H0GA 1MIUA 2E2HA 1SC7A 4FYDA 4NOMA 2JA5A 1EK8A 4Q5GA 1EH1A 1WCMA 4KB4A 1TWHA 4F3EA 1TWFA 2R7ZA 1ISEA 4AYBA 2A6HD 5MLC9 3P9AA 1LPQA 2Y0SA 4OYDB 1YNJD 3GTPA 2VUMA 4H3TA 4LMOA 3DU6A 5JSBB 4FXDA 4QIWA 2R92A 1Y1WA 1K4SA 2O5JD 4Q5VA 4KAWX 1R49A 2A69D 4QCLA 3MAQA 1IW7D 1EJ9A 1I6VD 2E2IA 1Y698 2R4GA 3KYLA 1K4TA 1Y1VA 1V9MA 3CQZA 1T8IA 5JSNB 3GTQA 2JA7A 1TWGA 4AHCA 3GTGA 3K59A 2B63A 4EJ3A 3GTKA 2R93A 3GTOA 1DD5A 3GTJA 4JLRC 4KC6A 3K57A 2YU9A 1SFOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Q5G A;  4IP8 A;  4IP9 A; 
#chains in the Genus database with same CATH topology
 3K58 A;  1TGO A;  3K5M A;  1A31 A;  3GTL A;  1GE9 A;  3SJR A;  4C2M A;  1TWA A;  1I50 A;  1WQH A;  3DU5 A;  1A35 A;  1K83 A;  2B9S B;  1NH3 A;  4GFQ A;  4NOK A;  4L8I A;  3M4A A;  1A36 A;  1RR8 C;  2NVX A;  1WQF A;  1R5Z A;  2A68 D;  2PMZ A;  2WB1 A;  4AN8 A;  4IP8 A;  3K5N A;  3HKZ A;  5C9H A;  3FKI A;  4KDD A;  4NOL A;  1SEU A;  4IP9 A;  3WVO A;  1SMY D;  2BE5 D;  3K5L A;  4KB2 A;  3LHP S;  1I3Q A;  1YNN D;  1RRJ A;  4O26 A;  2NVY A;  5CQG A;  2F4Q A;  1WQG A;  1HQM D;  3GTM A;  1Q8I A;  3K5O A;  2WAQ A;  3LF9 A;  3IAY A;  1R9T A;  1ZYR D;  4D3Z A;  4D3Y A;  1TL8 A;  1IS1 A;  2JA6 A;  4FGU A;  1TWC A;  2A6E D;  2CW0 D;  3H0G A;  1MIU A;  2E2H A;  1SC7 A;  4FYD A;  4NOM A;  2JA5 A;  1EK8 A;  4Q5G A;  1EH1 A;  1WCM A;  4KB4 A;  1TWH A;  4F3E A;  1TWF A;  2R7Z A;  1ISE A;  4AYB A;  2A6H D;  5MLC 9;  3P9A A;  1LPQ A;  2Y0S A;  4OYD B;  1YNJ D;  3GTP A;  2VUM A;  4H3T A;  4LMO A;  3DU6 A;  5JSB B;  4FXD A;  4QIW A;  2R92 A;  1Y1W A;  1K4S A;  2O5J D;  4Q5V A;  4KAW X;  1R49 A;  2A69 D;  4QCL A;  3MAQ A;  1IW7 D;  1EJ9 A;  1I6V D;  2E2I A;  1Y69 8;  2R4G A;  3KYL A;  1K4T A;  1Y1V A;  1V9M A;  3CQZ A;  1T8I A;  5JSN B;  3GTQ A;  2JA7 A;  1TWG A;  4AHC A;  3GTG A;  3K59 A;  2B63 A;  4EJ3 A;  3GTK A;  2R93 A;  3GTO A;  1DD5 A;  3GTJ A;  4JLR C;  4KC6 A;  3K57 A;  2YU9 A;  1SFO A; 
#chains in the Genus database with same CATH homology
 3K58 A;  1TGO A;  3K5M A;  1A31 A;  3GTL A;  1GE9 A;  3SJR A;  4C2M A;  1TWA A;  1I50 A;  1WQH A;  3DU5 A;  1A35 A;  1K83 A;  2B9S B;  1NH3 A;  4GFQ A;  4NOK A;  4L8I A;  3M4A A;  1A36 A;  1RR8 C;  2NVX A;  1WQF A;  1R5Z A;  2A68 D;  2PMZ A;  2WB1 A;  4AN8 A;  4IP8 A;  3K5N A;  3HKZ A;  5C9H A;  3FKI A;  4KDD A;  4NOL A;  1SEU A;  4IP9 A;  3WVO A;  1SMY D;  2BE5 D;  3K5L A;  4KB2 A;  3LHP S;  1I3Q A;  1YNN D;  1RRJ A;  4O26 A;  2NVY A;  5CQG A;  2F4Q A;  1WQG A;  1HQM D;  3GTM A;  1Q8I A;  3K5O A;  2WAQ A;  3LF9 A;  3IAY A;  1R9T A;  1ZYR D;  4D3Z A;  4D3Y A;  1TL8 A;  1IS1 A;  2JA6 A;  4FGU A;  1TWC A;  2A6E D;  2CW0 D;  3H0G A;  1MIU A;  2E2H A;  1SC7 A;  4FYD A;  4NOM A;  2JA5 A;  1EK8 A;  4Q5G A;  1EH1 A;  1WCM A;  4KB4 A;  1TWH A;  4F3E A;  1TWF A;  2R7Z A;  1ISE A;  4AYB A;  2A6H D;  5MLC 9;  3P9A A;  1LPQ A;  2Y0S A;  4OYD B;  1YNJ D;  3GTP A;  2VUM A;  4H3T A;  4LMO A;  3DU6 A;  5JSB B;  4FXD A;  4QIW A;  2R92 A;  1Y1W A;  1K4S A;  2O5J D;  4Q5V A;  4KAW X;  1R49 A;  2A69 D;  4QCL A;  3MAQ A;  1IW7 D;  1EJ9 A;  1I6V D;  2E2I A;  1Y69 8;  2R4G A;  3KYL A;  1K4T A;  1Y1V A;  1V9M A;  3CQZ A;  1T8I A;  5JSN B;  3GTQ A;  2JA7 A;  1TWG A;  4AHC A;  3GTG A;  3K59 A;  2B63 A;  4EJ3 A;  3GTK A;  2R93 A;  3GTO A;  1DD5 A;  3GTJ A;  4JLR C;  4KC6 A;  3K57 A;  2YU9 A;  1SFO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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