4Q5GA

Crystal structure of mouse serum amyloid a3
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
103
structure length
99
Chain Sequence
RWVQFMKEAGQGSRDMWRAYSDMKKANWKNSDKYFHARGNYDAARRGPGGAWAAKVISDAREAVQKFTGDSRADQFANEWGRSGKDPNHFRPAGLPKRY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Biochemical and structural analysis reveals a retinol binding function for serum amyloid A proteins
rcsb
molecule tags Protein binding
source organism Mus musculus
molecule keywords Serum amyloid A-3 protein
total genus 41
structure length 99
sequence length 103
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-04-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00277 SAA Serum amyloid A protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.110 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 4q5gA00
4Q5GA 4IP9A 4IP8A
chains in the Genus database with same CATH superfamily
3KYLA 4AYBA 1K83A 2Y0SA 1TWAA 5JSBB 4FYDA 1Y1VA 2R93A 1WCMA 5C9HA 2A69D 1R9TA 4IP8A 4FGUA 1WQGA 3GTJA 1TL8A 3GTPA 4D3ZA 1Y698 4GFQA 4L8IA 1SFOA 4KC6A 1ZYRD 2R4GA 3M4AA 1MIUA 1IS1A 2B9SB 1DD5A 1TWFA 1TWCA 1WQFA 3H0GA 4AN8A 3GTGA 5MLC9 4NOMA 5CQGA 4H3TA 2JA7A 1TGOA 2A6HD 3GTLA 3LHPS 3MAQA 3LF9A 3K58A 1IW7D 4KB4A 1A36A 4NOLA 3HKZA 4D3YA 3GTMA 1V9MA 2CW0D 4IP9A 2JA6A 1K4SA 3CQZA 1SMYD 1SEUA 3K5LA 1GE9A 1HQMD 1TWHA 3K5OA 1T8IA 1RRJA 2A6ED 2E2IA 3P9AA 4LMOA 4F3EA 3GTOA 3FKIA 1A35A 1A31A 2NVXA 3K5NA 4KAWX 4KB2A 2VUMA 4C2MA 2O5JD 2WAQA 4O26A 1K4TA 3WVOA 4JLRC 3IAYA 1Q8IA 1R5ZA 1I6VD 1R49A 2YU9A 3DU6A 1LPQA 1SC7A 4QCLA 2BE5D 1EK8A 3GTQA 4NOKA 3K5MA 2NVYA 3DU5A 1Y1WA 4AHCA 1YNJD 2JA5A 1NH3A 1I50A 2F4QA 2B63A 4Q5GA 1EH1A 2R92A 2E2HA 4FXDA 5JSNB 4EJ3A 4Q5VA 2R7ZA 2A68D 1EJ9A 1RR8C 4KDDA 4OYDB 2PMZA 4QIWA 3K57A 1TWGA 3K59A 1I3QA 1WQHA 1ISEA 3SJRA 2WB1A 3GTKA 1YNND
chains in the Genus database with same CATH topology
3KYLA 4AYBA 1K83A 2Y0SA 1TWAA 5JSBB 4FYDA 1Y1VA 2R93A 1WCMA 5C9HA 2A69D 1R9TA 4IP8A 4FGUA 1WQGA 3GTJA 1TL8A 3GTPA 4D3ZA 1Y698 4GFQA 4L8IA 1SFOA 4KC6A 1ZYRD 2R4GA 3M4AA 1MIUA 1IS1A 2B9SB 1DD5A 1TWFA 1TWCA 1WQFA 3H0GA 4AN8A 3GTGA 5MLC9 4NOMA 5CQGA 4H3TA 2JA7A 1TGOA 2A6HD 3GTLA 3LHPS 3MAQA 3LF9A 3K58A 1IW7D 4KB4A 1A36A 4NOLA 3HKZA 4D3YA 3GTMA 1V9MA 2CW0D 4IP9A 2JA6A 1K4SA 3CQZA 1SMYD 1SEUA 3K5LA 1GE9A 1HQMD 1TWHA 3K5OA 1T8IA 1RRJA 2A6ED 2E2IA 3P9AA 4LMOA 4F3EA 3GTOA 3FKIA 1A35A 1A31A 2NVXA 3K5NA 4KAWX 4KB2A 2VUMA 4C2MA 2O5JD 2WAQA 4O26A 1K4TA 3WVOA 4JLRC 3IAYA 1Q8IA 1R5ZA 1I6VD 1R49A 2YU9A 3DU6A 1LPQA 1SC7A 4QCLA 2BE5D 1EK8A 3GTQA 4NOKA 3K5MA 2NVYA 3DU5A 1Y1WA 4AHCA 1YNJD 2JA5A 1NH3A 1I50A 2F4QA 2B63A 4Q5GA 1EH1A 2R92A 2E2HA 4FXDA 5JSNB 4EJ3A 4Q5VA 2R7ZA 2A68D 1EJ9A 1RR8C 4KDDA 4OYDB 2PMZA 4QIWA 3K57A 1TWGA 3K59A 1I3QA 1WQHA 1ISEA 3SJRA 2WB1A 3GTKA 1YNND
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Q5G A;  4IP9 A;  4IP8 A; 
#chains in the Genus database with same CATH topology
 3KYL A;  4AYB A;  1K83 A;  2Y0S A;  1TWA A;  5JSB B;  4FYD A;  1Y1V A;  2R93 A;  1WCM A;  5C9H A;  2A69 D;  1R9T A;  4IP8 A;  4FGU A;  1WQG A;  3GTJ A;  1TL8 A;  3GTP A;  4D3Z A;  1Y69 8;  4GFQ A;  4L8I A;  1SFO A;  4KC6 A;  1ZYR D;  2R4G A;  3M4A A;  1MIU A;  1IS1 A;  2B9S B;  1DD5 A;  1TWF A;  1TWC A;  1WQF A;  3H0G A;  4AN8 A;  3GTG A;  5MLC 9;  4NOM A;  5CQG A;  4H3T A;  2JA7 A;  1TGO A;  2A6H D;  3GTL A;  3LHP S;  3MAQ A;  3LF9 A;  3K58 A;  1IW7 D;  4KB4 A;  1A36 A;  4NOL A;  3HKZ A;  4D3Y A;  3GTM A;  1V9M A;  2CW0 D;  4IP9 A;  2JA6 A;  1K4S A;  3CQZ A;  1SMY D;  1SEU A;  3K5L A;  1GE9 A;  1HQM D;  1TWH A;  3K5O A;  1T8I A;  1RRJ A;  2A6E D;  2E2I A;  3P9A A;  4LMO A;  4F3E A;  3GTO A;  3FKI A;  1A35 A;  1A31 A;  2NVX A;  3K5N A;  4KAW X;  4KB2 A;  2VUM A;  4C2M A;  2O5J D;  2WAQ A;  4O26 A;  1K4T A;  3WVO A;  4JLR C;  3IAY A;  1Q8I A;  1R5Z A;  1I6V D;  1R49 A;  2YU9 A;  3DU6 A;  1LPQ A;  1SC7 A;  4QCL A;  2BE5 D;  1EK8 A;  3GTQ A;  4NOK A;  3K5M A;  2NVY A;  3DU5 A;  1Y1W A;  4AHC A;  1YNJ D;  2JA5 A;  1NH3 A;  1I50 A;  2F4Q A;  2B63 A;  4Q5G A;  1EH1 A;  2R92 A;  2E2H A;  4FXD A;  5JSN B;  4EJ3 A;  4Q5V A;  2R7Z A;  2A68 D;  1EJ9 A;  1RR8 C;  4KDD A;  4OYD B;  2PMZ A;  4QIW A;  3K57 A;  1TWG A;  3K59 A;  1I3Q A;  1WQH A;  1ISE A;  3SJR A;  2WB1 A;  3GTK A;  1YNN D; 
#chains in the Genus database with same CATH homology
 3KYL A;  4AYB A;  1K83 A;  2Y0S A;  1TWA A;  5JSB B;  4FYD A;  1Y1V A;  2R93 A;  1WCM A;  5C9H A;  2A69 D;  1R9T A;  4IP8 A;  4FGU A;  1WQG A;  3GTJ A;  1TL8 A;  3GTP A;  4D3Z A;  1Y69 8;  4GFQ A;  4L8I A;  1SFO A;  4KC6 A;  1ZYR D;  2R4G A;  3M4A A;  1MIU A;  1IS1 A;  2B9S B;  1DD5 A;  1TWF A;  1TWC A;  1WQF A;  3H0G A;  4AN8 A;  3GTG A;  5MLC 9;  4NOM A;  5CQG A;  4H3T A;  2JA7 A;  1TGO A;  2A6H D;  3GTL A;  3LHP S;  3MAQ A;  3LF9 A;  3K58 A;  1IW7 D;  4KB4 A;  1A36 A;  4NOL A;  3HKZ A;  4D3Y A;  3GTM A;  1V9M A;  2CW0 D;  4IP9 A;  2JA6 A;  1K4S A;  3CQZ A;  1SMY D;  1SEU A;  3K5L A;  1GE9 A;  1HQM D;  1TWH A;  3K5O A;  1T8I A;  1RRJ A;  2A6E D;  2E2I A;  3P9A A;  4LMO A;  4F3E A;  3GTO A;  3FKI A;  1A35 A;  1A31 A;  2NVX A;  3K5N A;  4KAW X;  4KB2 A;  2VUM A;  4C2M A;  2O5J D;  2WAQ A;  4O26 A;  1K4T A;  3WVO A;  4JLR C;  3IAY A;  1Q8I A;  1R5Z A;  1I6V D;  1R49 A;  2YU9 A;  3DU6 A;  1LPQ A;  1SC7 A;  4QCL A;  2BE5 D;  1EK8 A;  3GTQ A;  4NOK A;  3K5M A;  2NVY A;  3DU5 A;  1Y1W A;  4AHC A;  1YNJ D;  2JA5 A;  1NH3 A;  1I50 A;  2F4Q A;  2B63 A;  4Q5G A;  1EH1 A;  2R92 A;  2E2H A;  4FXD A;  5JSN B;  4EJ3 A;  4Q5V A;  2R7Z A;  2A68 D;  1EJ9 A;  1RR8 C;  4KDD A;  4OYD B;  2PMZ A;  4QIW A;  3K57 A;  1TWG A;  3K59 A;  1I3Q A;  1WQH A;  1ISE A;  3SJR A;  2WB1 A;  3GTK A;  1YNN D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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