4Q5GA

Crystal structure of mouse serum amyloid a3
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
103
structure length
99
Chain Sequence
RWVQFMKEAGQGSRDMWRAYSDMKKANWKNSDKYFHARGNYDAARRGPGGAWAAKVISDAREAVQKFTGDSRADQFANEWGRSGKDPNHFRPAGLPKRY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Biochemical and structural analysis reveals a retinol binding function for serum amyloid A proteins
rcsb
molecule tags Protein binding
source organism Mus musculus
molecule keywords Serum amyloid A-3 protein
total genus 41
structure length 99
sequence length 103
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-04-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00277 SAA Serum amyloid A protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.110 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 4q5gA00
4IP9A 4IP8A 4Q5GA
chains in the Genus database with same CATH superfamily
1GE9A 3GTLA 2YU9A 2WAQA 2R7ZA 3GTGA 1MIUA 3K5OA 3H0GA 2A68D 1SC7A 2B9SB 3IAYA 1R5ZA 3CQZA 1Y1VA 2F4QA 2R4GA 4AYBA 1IW7D 2A6ED 2O5JD 4KAWX 1K83A 4NOLA 1TL8A 4JLRC 3GTMA 4L8IA 1T8IA 5JSNB 1R9TA 3K57A 1TWAA 3KYLA 1I50A 1K4TA 3WVOA 4AN8A 4QIWA 4KB2A 3GTOA 4IP8A 2B63A 2E2HA 1WQGA 2JA5A 1EJ9A 4QCLA 1TWFA 4GFQA 2BE5D 2CW0D 1SEUA 1WQHA 4C2MA 3K5LA 3K59A 5JSBB 2Y0SA 3HKZA 1ZYRD 3SJRA 3K5NA 1LPQA 1WQFA 4KB4A 1DD5A 3GTPA 4O26A 1EH1A 1TGOA 1SFOA 5C9HA 4IP9A 4AHCA 1SMYD 1YNJD 4KC6A 3GTQA 4D3YA 4NOMA 1YNND 4OYDB 2A69D 1EK8A 2VUMA 1Y1WA 1A31A 1K4SA 5CQGA 1ISEA 3DU6A 4KDDA 2NVXA 1WCMA 1RRJA 4Q5VA 3K5MA 2R92A 4H3TA 2JA7A 2R93A 3K58A 2NVYA 5MLC9 4FXDA 1I3QA 4FGUA 1NH3A 3LHPS 4D3ZA 3MAQA 1A36A 2PMZA 2A6HD 2JA6A 3GTJA 1TWHA 3DU5A 2E2IA 1IS1A 3GTKA 1TWGA 2WB1A 1RR8C 1V9MA 3FKIA 1I6VD 1TWCA 4FYDA 1A35A 1Q8IA 4NOKA 4F3EA 3LF9A 4EJ3A 1HQMD 4LMOA 3P9AA 4Q5GA 3M4AA 1Y698 1R49A
chains in the Genus database with same CATH topology
1GE9A 3GTLA 2YU9A 2WAQA 2R7ZA 3GTGA 1MIUA 3K5OA 3H0GA 2A68D 1SC7A 2B9SB 3IAYA 1R5ZA 3CQZA 1Y1VA 2F4QA 2R4GA 4AYBA 1IW7D 2A6ED 2O5JD 4KAWX 1K83A 4NOLA 1TL8A 4JLRC 3GTMA 4L8IA 1T8IA 5JSNB 1R9TA 3K57A 1TWAA 3KYLA 1I50A 1K4TA 3WVOA 4AN8A 4QIWA 4KB2A 3GTOA 4IP8A 2B63A 2E2HA 1WQGA 2JA5A 1EJ9A 4QCLA 1TWFA 4GFQA 2BE5D 2CW0D 1SEUA 1WQHA 4C2MA 3K5LA 3K59A 5JSBB 2Y0SA 3HKZA 1ZYRD 3SJRA 3K5NA 1LPQA 1WQFA 4KB4A 1DD5A 3GTPA 4O26A 1EH1A 1TGOA 1SFOA 5C9HA 4IP9A 4AHCA 1SMYD 1YNJD 4KC6A 3GTQA 4D3YA 4NOMA 1YNND 4OYDB 2A69D 1EK8A 2VUMA 1Y1WA 1A31A 1K4SA 5CQGA 1ISEA 3DU6A 4KDDA 2NVXA 1WCMA 1RRJA 4Q5VA 3K5MA 2R92A 4H3TA 2JA7A 2R93A 3K58A 2NVYA 5MLC9 4FXDA 1I3QA 4FGUA 1NH3A 3LHPS 4D3ZA 3MAQA 1A36A 2PMZA 2A6HD 2JA6A 3GTJA 1TWHA 3DU5A 2E2IA 1IS1A 3GTKA 1TWGA 2WB1A 1RR8C 1V9MA 3FKIA 1I6VD 1TWCA 4FYDA 1A35A 1Q8IA 4NOKA 4F3EA 3LF9A 4EJ3A 1HQMD 4LMOA 3P9AA 4Q5GA 3M4AA 1Y698 1R49A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IP9 A;  4IP8 A;  4Q5G A; 
#chains in the Genus database with same CATH topology
 1GE9 A;  3GTL A;  2YU9 A;  2WAQ A;  2R7Z A;  3GTG A;  1MIU A;  3K5O A;  3H0G A;  2A68 D;  1SC7 A;  2B9S B;  3IAY A;  1R5Z A;  3CQZ A;  1Y1V A;  2F4Q A;  2R4G A;  4AYB A;  1IW7 D;  2A6E D;  2O5J D;  4KAW X;  1K83 A;  4NOL A;  1TL8 A;  4JLR C;  3GTM A;  4L8I A;  1T8I A;  5JSN B;  1R9T A;  3K57 A;  1TWA A;  3KYL A;  1I50 A;  1K4T A;  3WVO A;  4AN8 A;  4QIW A;  4KB2 A;  3GTO A;  4IP8 A;  2B63 A;  2E2H A;  1WQG A;  2JA5 A;  1EJ9 A;  4QCL A;  1TWF A;  4GFQ A;  2BE5 D;  2CW0 D;  1SEU A;  1WQH A;  4C2M A;  3K5L A;  3K59 A;  5JSB B;  2Y0S A;  3HKZ A;  1ZYR D;  3SJR A;  3K5N A;  1LPQ A;  1WQF A;  4KB4 A;  1DD5 A;  3GTP A;  4O26 A;  1EH1 A;  1TGO A;  1SFO A;  5C9H A;  4IP9 A;  4AHC A;  1SMY D;  1YNJ D;  4KC6 A;  3GTQ A;  4D3Y A;  4NOM A;  1YNN D;  4OYD B;  2A69 D;  1EK8 A;  2VUM A;  1Y1W A;  1A31 A;  1K4S A;  5CQG A;  1ISE A;  3DU6 A;  4KDD A;  2NVX A;  1WCM A;  1RRJ A;  4Q5V A;  3K5M A;  2R92 A;  4H3T A;  2JA7 A;  2R93 A;  3K58 A;  2NVY A;  5MLC 9;  4FXD A;  1I3Q A;  4FGU A;  1NH3 A;  3LHP S;  4D3Z A;  3MAQ A;  1A36 A;  2PMZ A;  2A6H D;  2JA6 A;  3GTJ A;  1TWH A;  3DU5 A;  2E2I A;  1IS1 A;  3GTK A;  1TWG A;  2WB1 A;  1RR8 C;  1V9M A;  3FKI A;  1I6V D;  1TWC A;  4FYD A;  1A35 A;  1Q8I A;  4NOK A;  4F3E A;  3LF9 A;  4EJ3 A;  1HQM D;  4LMO A;  3P9A A;  4Q5G A;  3M4A A;  1Y69 8;  1R49 A; 
#chains in the Genus database with same CATH homology
 1GE9 A;  3GTL A;  2YU9 A;  2WAQ A;  2R7Z A;  3GTG A;  1MIU A;  3K5O A;  3H0G A;  2A68 D;  1SC7 A;  2B9S B;  3IAY A;  1R5Z A;  3CQZ A;  1Y1V A;  2F4Q A;  2R4G A;  4AYB A;  1IW7 D;  2A6E D;  2O5J D;  4KAW X;  1K83 A;  4NOL A;  1TL8 A;  4JLR C;  3GTM A;  4L8I A;  1T8I A;  5JSN B;  1R9T A;  3K57 A;  1TWA A;  3KYL A;  1I50 A;  1K4T A;  3WVO A;  4AN8 A;  4QIW A;  4KB2 A;  3GTO A;  4IP8 A;  2B63 A;  2E2H A;  1WQG A;  2JA5 A;  1EJ9 A;  4QCL A;  1TWF A;  4GFQ A;  2BE5 D;  2CW0 D;  1SEU A;  1WQH A;  4C2M A;  3K5L A;  3K59 A;  5JSB B;  2Y0S A;  3HKZ A;  1ZYR D;  3SJR A;  3K5N A;  1LPQ A;  1WQF A;  4KB4 A;  1DD5 A;  3GTP A;  4O26 A;  1EH1 A;  1TGO A;  1SFO A;  5C9H A;  4IP9 A;  4AHC A;  1SMY D;  1YNJ D;  4KC6 A;  3GTQ A;  4D3Y A;  4NOM A;  1YNN D;  4OYD B;  2A69 D;  1EK8 A;  2VUM A;  1Y1W A;  1A31 A;  1K4S A;  5CQG A;  1ISE A;  3DU6 A;  4KDD A;  2NVX A;  1WCM A;  1RRJ A;  4Q5V A;  3K5M A;  2R92 A;  4H3T A;  2JA7 A;  2R93 A;  3K58 A;  2NVY A;  5MLC 9;  4FXD A;  1I3Q A;  4FGU A;  1NH3 A;  3LHP S;  4D3Z A;  3MAQ A;  1A36 A;  2PMZ A;  2A6H D;  2JA6 A;  3GTJ A;  1TWH A;  3DU5 A;  2E2I A;  1IS1 A;  3GTK A;  1TWG A;  2WB1 A;  1RR8 C;  1V9M A;  3FKI A;  1I6V D;  1TWC A;  4FYD A;  1A35 A;  1Q8I A;  4NOK A;  4F3E A;  3LF9 A;  4EJ3 A;  1HQM D;  4LMO A;  3P9A A;  4Q5G A;  3M4A A;  1Y69 8;  1R49 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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