1B75A

Solution structure of ribosomal protein l25 from escherichia coli
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
94
structure length
94
Chain Sequence
b'MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords PROTEIN (50S RIBOSOMAL PROTEIN L25)
publication title The NMR structure of Escherichia coli ribosomal protein L25 shows homology to general stress proteins and glutaminyl-tRNA synthetases.
pubmed doi rcsb
molecule tags Rna binding protein
total genus 15
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 1999-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01386 Ribosomal_L25p Ribosomal L25p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 1b75A00
5GADW 3J7ZV 5HL7S 3PIOS 2RE8A 1QRTA 4WFAS 4JXXA 4IO9S 4IOAS 5DM7S 1D6KA 4JYZA 5GAEW 5GAGW 2HZ7A 3DLLS 1ZJWA 2ZJPS 5JVHS 1O0CA 1GTSA 3AIIA 4WF9S 2ZJRS 1QRSA 4WFBS 1GTRA 4H3SA 4WCES 1EUQA 1NYLA 1EXDA 1FEUA 2ZJQS 5BNZA 4JXZA 3CF5S 4UY88 5DM6S 5JVGS 2RD2A 4IOCS 5GAHW 1DFUP 1O0BA 3PIPS 1B75A 4P2BA 4U67S 1EUYA 1QRUA 4WFNS 1QTQA 5IZNA
chains in the Genus database with same CATH superfamily
5GADW 3CZBA 3J7ZV 4JXXA 1D6KA 2NWAA 1O0CA 5JVHS 4H4KA 2EGVA 2PJJA 5JVGS 2RD2A 4IOCS 2PI8A 1O0BA 3PIPS 4P2BA 1QTQA 4E8BA 5IZNA 2GAEA 4IOAS 5GAGW 3KW2A 1QRSA 1VHYA 4WCES 5BNZA 4JXZA 3W2WB 4UY88 5DM6S 5GAHW 2EGWA 1EUYA 1QRUA 1EXDA 4WFNS 1VHKA 5HL7S 3PIOS 2Z0YA 5DM7S 1Z85A 4JYZA 2HZ7A 3DLLS 1GTSA 3AIIA 4WF9S 1GTRA 4H3SA 1EUQA 1NYLA 4L69A 1UDXA 1DFUP 1B75A 2RE8A 1QRTA 3W2VB 2G5DA 4WFAS 4IO9S 4V194 5GAEW 1ZJWA 2ZJPS 2G6GA 3X1LB 1V6ZA 2ZJRS 4WFBS 2PNWA 2CX8A 4J3CA 1FEUA 2ZJQS 3CF5S 2AE0X 1NXZA 4U67S 2PICA
chains in the Genus database with same CATH topology
5GADW 3J7ZV 5HL7S 3PIOS 2RE8A 1QRTA 3W2VB 4WFAS 4JXXA 4IO9S 4IOAS 4V194 5DM7S 1D6KA 4JYZA 5GAEW 5GAGW 2HZ7A 3DLLS 1ZJWA 2ZJPS 5JVHS 1O0CA 1GTSA 3X1LB 3AIIA 4WF9S 4H4KA 2ZJRS 1QRSA 4WFBS 1GTRA 4H3SA 4WCES 1EUQA 1NYLA 1EXDA 1FEUA 2ZJQS 5BNZA 4JXZA 3CF5S 3W2WB 4UY88 5DM6S 5JVGS 1UDXA 2RD2A 4IOCS 5GAHW 1DFUP 1O0BA 3PIPS 1B75A 4P2BA 4U67S 1EUYA 1QRUA 4WFNS 1QTQA 5IZNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GAD W;  3J7Z V;  5HL7 S;  3PIO S;  2RE8 A;  1QRT A;  4WFA S;  4JXX A;  4IO9 S;  4IOA S;  5DM7 S;  1D6K A;  4JYZ A;  5GAE W;  5GAG W;  2HZ7 A;  3DLL S;  1ZJW A;  2ZJP S;  5JVH S;  1O0C A;  1GTS A;  3AII A;  4WF9 S;  2ZJR S;  1QRS A;  4WFB S;  1GTR A;  4H3S A;  4WCE S;  1EUQ A;  1NYL A;  1EXD A;  1FEU A;  2ZJQ S;  5BNZ A;  4JXZ A;  3CF5 S;  4UY8 8;  5DM6 S;  5JVG S;  2RD2 A;  4IOC S;  5GAH W;  1DFU P;  1O0B A;  3PIP S;  1B75 A;  4P2B A;  4U67 S;  1EUY A;  1QRU A;  4WFN S;  1QTQ A;  5IZN A; 
#chains in the Genus database with same CATH topology
 5GAD W;  3CZB A;  3J7Z V;  4JXX A;  1D6K A;  2NWA A;  1O0C A;  5JVH S;  4H4K A;  2EGV A;  2PJJ A;  5JVG S;  2RD2 A;  4IOC S;  2PI8 A;  1O0B A;  3PIP S;  4P2B A;  1QTQ A;  4E8B A;  5IZN A;  2GAE A;  4IOA S;  5GAG W;  3KW2 A;  1QRS A;  1VHY A;  4WCE S;  5BNZ A;  4JXZ A;  3W2W B;  4UY8 8;  5DM6 S;  5GAH W;  2EGW A;  1EUY A;  1QRU A;  1EXD A;  4WFN S;  1VHK A;  5HL7 S;  3PIO S;  2Z0Y A;  5DM7 S;  1Z85 A;  4JYZ A;  2HZ7 A;  3DLL S;  1GTS A;  3AII A;  4WF9 S;  1GTR A;  4H3S A;  1EUQ A;  1NYL A;  4L69 A;  1UDX A;  1DFU P;  1B75 A;  2RE8 A;  1QRT A;  3W2V B;  2G5D A;  4WFA S;  4IO9 S;  4V19 4;  5GAE W;  1ZJW A;  2ZJP S;  2G6G A;  3X1L B;  1V6Z A;  2ZJR S;  4WFB S;  2PNW A;  2CX8 A;  4J3C A;  1FEU A;  2ZJQ S;  3CF5 S;  2AE0 X;  1NXZ A;  4U67 S;  2PIC A; 
#chains in the Genus database with same CATH homology
 5GAD W;  3J7Z V;  5HL7 S;  3PIO S;  2RE8 A;  1QRT A;  3W2V B;  4WFA S;  4JXX A;  4IO9 S;  4IOA S;  4V19 4;  5DM7 S;  1D6K A;  4JYZ A;  5GAE W;  5GAG W;  2HZ7 A;  3DLL S;  1ZJW A;  2ZJP S;  5JVH S;  1O0C A;  1GTS A;  3X1L B;  3AII A;  4WF9 S;  4H4K A;  2ZJR S;  1QRS A;  4WFB S;  1GTR A;  4H3S A;  4WCE S;  1EUQ A;  1NYL A;  1EXD A;  1FEU A;  2ZJQ S;  5BNZ A;  4JXZ A;  3CF5 S;  3W2W B;  4UY8 8;  5DM6 S;  5JVG S;  1UDX A;  2RD2 A;  4IOC S;  5GAH W;  1DFU P;  1O0B A;  3PIP S;  1B75 A;  4P2B A;  4U67 S;  1EUY A;  1QRU A;  4WFN S;  1QTQ A;  5IZN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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