1B75A

Solution structure of ribosomal protein l25 from escherichia coli
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
94
structure length
94
Chain Sequence
MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The NMR structure of Escherichia coli ribosomal protein L25 shows homology to general stress proteins and glutaminyl-tRNA synthetases.
pubmed doi rcsb
molecule tags Rna binding protein
molecule keywords PROTEIN (50S RIBOSOMAL PROTEIN L25)
total genus 15
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 1999-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01386 Ribosomal_L25p Ribosomal L25p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 1b75A00
1ZJWA 4WFAS 1FEUA 2ZJRS 1QRSA 1O0CA 1DFUP 1GTSA 1EUQA 4IOAS 4UY88 1QRUA 4H3SA 3CF5S 5GAEW 4IO9S 4JXZA 5JVHS 2ZJPS 2RE8A 1D6KA 3DLLS 4WFBS 3PIOS 5GAHW 4WFNS 2ZJQS 4IOCS 1GTRA 1NYLA 1O0BA 3AIIA 4WCES 1QRTA 3PIPS 1EUYA 5IZNA 5GAGW 4WF9S 5GADW 1QTQA 5HL7S 5DM7S 4U67S 2RD2A 5JVGS 1EXDA 5DM6S 1B75A 4JYZA 2HZ7A 3J7ZV 5BNZA 4P2BA 4JXXA
chains in the Genus database with same CATH superfamily
1ZJWA 2G5DA 2G6GA 4WFAS 2GAEA 2ZJRS 1QRSA 1O0CA 1DFUP 2PJJA 1FEUA 1GTSA 3W2VB 2PICA 1EUQA 4IOAS 4UY88 1QRUA 2AE0X 2CX8A 2EGVA 1V6ZA 4H3SA 2Z0YA 5GAEW 3CF5S 5JVHS 3CZBA 4H4KA 2PNWA 3KW2A 2ZJPS 4V194 3X1LB 2RE8A 4J3CA 4E8BA 1VHKA 1D6KA 3DLLS 4WFBS 3PIOS 5GAHW 4WFNS 2ZJQS 4IOCS 1GTRA 1NYLA 3W2WB 2EGWA 1O0BA 3AIIA 4WCES 1QRTA 3PIPS 1EUYA 1UDXA 5IZNA 5GAGW 4WF9S 5GADW 1QTQA 1NXZA 5DM7S 5HL7S 4U67S 2RD2A 5JVGS 1EXDA 2NWAA 5DM6S 1B75A 1VHYA 4JYZA 2HZ7A 3J7ZV 2PI8A 4IO9S 4JXZA 5BNZA 1Z85A 4P2BA 4JXXA 4L69A
chains in the Genus database with same CATH topology
1ZJWA 4WFAS 1FEUA 2ZJRS 1QRSA 1O0CA 1DFUP 1GTSA 3W2VB 1EUQA 4IOAS 4UY88 1QRUA 4H3SA 3CF5S 5GAEW 4IO9S 4JXZA 5JVHS 4H4KA 4V194 2ZJPS 3X1LB 2RE8A 1D6KA 3DLLS 4WFBS 3PIOS 5GAHW 4WFNS 2ZJQS 4IOCS 1GTRA 1NYLA 3W2WB 1O0BA 3AIIA 4WCES 1QRTA 3PIPS 1EUYA 1UDXA 5IZNA 5GAGW 4WF9S 5GADW 1QTQA 5HL7S 5DM7S 4U67S 2RD2A 5JVGS 1EXDA 5DM6S 1B75A 4JYZA 2HZ7A 3J7ZV 5BNZA 4P2BA 4JXXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZJW A;  4WFA S;  1FEU A;  2ZJR S;  1QRS A;  1O0C A;  1DFU P;  1GTS A;  1EUQ A;  4IOA S;  4UY8 8;  1QRU A;  4H3S A;  3CF5 S;  5GAE W;  4IO9 S;  4JXZ A;  5JVH S;  2ZJP S;  2RE8 A;  1D6K A;  3DLL S;  4WFB S;  3PIO S;  5GAH W;  4WFN S;  2ZJQ S;  4IOC S;  1GTR A;  1NYL A;  1O0B A;  3AII A;  4WCE S;  1QRT A;  3PIP S;  1EUY A;  5IZN A;  5GAG W;  4WF9 S;  5GAD W;  1QTQ A;  5HL7 S;  5DM7 S;  4U67 S;  2RD2 A;  5JVG S;  1EXD A;  5DM6 S;  1B75 A;  4JYZ A;  2HZ7 A;  3J7Z V;  5BNZ A;  4P2B A;  4JXX A; 
#chains in the Genus database with same CATH topology
 1ZJW A;  2G5D A;  2G6G A;  4WFA S;  2GAE A;  2ZJR S;  1QRS A;  1O0C A;  1DFU P;  2PJJ A;  1FEU A;  1GTS A;  3W2V B;  2PIC A;  1EUQ A;  4IOA S;  4UY8 8;  1QRU A;  2AE0 X;  2CX8 A;  2EGV A;  1V6Z A;  4H3S A;  2Z0Y A;  5GAE W;  3CF5 S;  5JVH S;  3CZB A;  4H4K A;  2PNW A;  3KW2 A;  2ZJP S;  4V19 4;  3X1L B;  2RE8 A;  4J3C A;  4E8B A;  1VHK A;  1D6K A;  3DLL S;  4WFB S;  3PIO S;  5GAH W;  4WFN S;  2ZJQ S;  4IOC S;  1GTR A;  1NYL A;  3W2W B;  2EGW A;  1O0B A;  3AII A;  4WCE S;  1QRT A;  3PIP S;  1EUY A;  1UDX A;  5IZN A;  5GAG W;  4WF9 S;  5GAD W;  1QTQ A;  1NXZ A;  5DM7 S;  5HL7 S;  4U67 S;  2RD2 A;  5JVG S;  1EXD A;  2NWA A;  5DM6 S;  1B75 A;  1VHY A;  4JYZ A;  2HZ7 A;  3J7Z V;  2PI8 A;  4IO9 S;  4JXZ A;  5BNZ A;  1Z85 A;  4P2B A;  4JXX A;  4L69 A; 
#chains in the Genus database with same CATH homology
 1ZJW A;  4WFA S;  1FEU A;  2ZJR S;  1QRS A;  1O0C A;  1DFU P;  1GTS A;  3W2V B;  1EUQ A;  4IOA S;  4UY8 8;  1QRU A;  4H3S A;  3CF5 S;  5GAE W;  4IO9 S;  4JXZ A;  5JVH S;  4H4K A;  4V19 4;  2ZJP S;  3X1L B;  2RE8 A;  1D6K A;  3DLL S;  4WFB S;  3PIO S;  5GAH W;  4WFN S;  2ZJQ S;  4IOC S;  1GTR A;  1NYL A;  3W2W B;  1O0B A;  3AII A;  4WCE S;  1QRT A;  3PIP S;  1EUY A;  1UDX A;  5IZN A;  5GAG W;  4WF9 S;  5GAD W;  1QTQ A;  5HL7 S;  5DM7 S;  4U67 S;  2RD2 A;  5JVG S;  1EXD A;  5DM6 S;  1B75 A;  4JYZ A;  2HZ7 A;  3J7Z V;  5BNZ A;  4P2B A;  4JXX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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