1B75A

Solution structure of ribosomal protein l25 from escherichia coli
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
94
structure length
94
Chain Sequence
MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords PROTEIN (50S RIBOSOMAL PROTEIN L25)
publication title The NMR structure of Escherichia coli ribosomal protein L25 shows homology to general stress proteins and glutaminyl-tRNA synthetases.
pubmed doi rcsb
molecule tags Rna binding protein
total genus 15
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 1999-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01386 Ribosomal_L25p Ribosomal L25p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 1b75A00
1O0CA 5GAGW 4JXXA 5JVGS 2ZJRS 3DLLS 1ZJWA 1GTSA 4WCES 1EXDA 5GAEW 3CF5S 1QRUA 3J7ZV 1QTQA 2ZJQS 4WFAS 4JXZA 5IZNA 4U67S 5DM7S 4H3SA 1GTRA 3AIIA 2RE8A 3PIPS 1QRTA 4UY88 1NYLA 2HZ7A 1D6KA 1QRSA 1FEUA 5BNZA 4P2BA 3PIOS 4IOAS 5GAHW 4JYZA 1EUYA 5DM6S 4IO9S 1DFUP 1B75A 2RD2A 4WFBS 5JVHS 5GADW 5HL7S 1O0BA 1EUQA 4WF9S 4WFNS 2ZJPS 4IOCS
chains in the Genus database with same CATH superfamily
1O0CA 2ZJRS 5GAEW 2G6GA 3J7ZV 2ZJQS 4U67S 3PIPS 1NYLA 2HZ7A 1QRSA 1NXZA 4P2BA 4L69A 1DFUP 1VHYA 2RD2A 4WF9S 5GADW 4WFNS 2ZJPS 2NWAA 5GAGW 1ZJWA 1GTSA 1EXDA 3CF5S 2Z0YA 1QRUA 4JXZA 4WFAS 2EGVA 3KW2A 3AIIA 2AE0X 5BNZA 3PIOS 1Z85A 5DM6S 4E8BA 1O0BA 4WFBS 2PICA 1VHKA 5HL7S 5JVHS 2EGWA 4IOCS 2G5DA 4JXXA 5JVGS 3X1LB 3DLLS 4WCES 1QTQA 1V6ZA 2PI8A 4J3CA 3W2VB 1D6KA 2PNWA 4IOAS 5GAHW 4JYZA 1EUYA 1B75A 1EUQA 2GAEA 1UDXA 3W2WB 5IZNA 2PJJA 4H3SA 5DM7S 1GTRA 2RE8A 1QRTA 4UY88 1FEUA 4IO9S 2CX8A 4H4KA 3CZBA 4V194
chains in the Genus database with same CATH topology
1O0CA 5GAGW 4JXXA 5JVGS 3X1LB 1UDXA 2ZJRS 3DLLS 1ZJWA 1GTSA 4WCES 1EXDA 5GAEW 3CF5S 1QRUA 3J7ZV 1QTQA 3W2WB 2ZJQS 4WFAS 4JXZA 5IZNA 4V194 4U67S 5DM7S 4H3SA 1GTRA 3AIIA 2RE8A 3W2VB 3PIPS 1QRTA 4UY88 1NYLA 2HZ7A 1D6KA 1QRSA 1FEUA 5BNZA 4P2BA 3PIOS 4IOAS 5GAHW 4JYZA 1EUYA 5DM6S 4IO9S 1DFUP 1B75A 2RD2A 4WFBS 5JVHS 5GADW 5HL7S 1O0BA 1EUQA 4H4KA 4WF9S 4WFNS 2ZJPS 4IOCS
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1O0C A;  5GAG W;  4JXX A;  5JVG S;  2ZJR S;  3DLL S;  1ZJW A;  1GTS A;  4WCE S;  1EXD A;  5GAE W;  3CF5 S;  1QRU A;  3J7Z V;  1QTQ A;  2ZJQ S;  4WFA S;  4JXZ A;  5IZN A;  4U67 S;  5DM7 S;  4H3S A;  1GTR A;  3AII A;  2RE8 A;  3PIP S;  1QRT A;  4UY8 8;  1NYL A;  2HZ7 A;  1D6K A;  1QRS A;  1FEU A;  5BNZ A;  4P2B A;  3PIO S;  4IOA S;  5GAH W;  4JYZ A;  1EUY A;  5DM6 S;  4IO9 S;  1DFU P;  1B75 A;  2RD2 A;  4WFB S;  5JVH S;  5GAD W;  5HL7 S;  1O0B A;  1EUQ A;  4WF9 S;  4WFN S;  2ZJP S;  4IOC S; 
#chains in the Genus database with same CATH topology
 1O0C A;  2ZJR S;  5GAE W;  2G6G A;  3J7Z V;  2ZJQ S;  4U67 S;  3PIP S;  1NYL A;  2HZ7 A;  1QRS A;  1NXZ A;  4P2B A;  4L69 A;  1DFU P;  1VHY A;  2RD2 A;  4WF9 S;  5GAD W;  4WFN S;  2ZJP S;  2NWA A;  5GAG W;  1ZJW A;  1GTS A;  1EXD A;  3CF5 S;  2Z0Y A;  1QRU A;  4JXZ A;  4WFA S;  2EGV A;  3KW2 A;  3AII A;  2AE0 X;  5BNZ A;  3PIO S;  1Z85 A;  5DM6 S;  4E8B A;  1O0B A;  4WFB S;  2PIC A;  1VHK A;  5HL7 S;  5JVH S;  2EGW A;  4IOC S;  2G5D A;  4JXX A;  5JVG S;  3X1L B;  3DLL S;  4WCE S;  1QTQ A;  1V6Z A;  2PI8 A;  4J3C A;  3W2V B;  1D6K A;  2PNW A;  4IOA S;  5GAH W;  4JYZ A;  1EUY A;  1B75 A;  1EUQ A;  2GAE A;  1UDX A;  3W2W B;  5IZN A;  2PJJ A;  4H3S A;  5DM7 S;  1GTR A;  2RE8 A;  1QRT A;  4UY8 8;  1FEU A;  4IO9 S;  2CX8 A;  4H4K A;  3CZB A;  4V19 4; 
#chains in the Genus database with same CATH homology
 1O0C A;  5GAG W;  4JXX A;  5JVG S;  3X1L B;  1UDX A;  2ZJR S;  3DLL S;  1ZJW A;  1GTS A;  4WCE S;  1EXD A;  5GAE W;  3CF5 S;  1QRU A;  3J7Z V;  1QTQ A;  3W2W B;  2ZJQ S;  4WFA S;  4JXZ A;  5IZN A;  4V19 4;  4U67 S;  5DM7 S;  4H3S A;  1GTR A;  3AII A;  2RE8 A;  3W2V B;  3PIP S;  1QRT A;  4UY8 8;  1NYL A;  2HZ7 A;  1D6K A;  1QRS A;  1FEU A;  5BNZ A;  4P2B A;  3PIO S;  4IOA S;  5GAH W;  4JYZ A;  1EUY A;  5DM6 S;  4IO9 S;  1DFU P;  1B75 A;  2RD2 A;  4WFB S;  5JVH S;  5GAD W;  5HL7 S;  1O0B A;  1EUQ A;  4H4K A;  4WF9 S;  4WFN S;  2ZJP S;  4IOC S; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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