1B75A

Solution structure of ribosomal protein l25 from escherichia coli
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
94
structure length
94
Chain Sequence
MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The NMR structure of Escherichia coli ribosomal protein L25 shows homology to general stress proteins and glutaminyl-tRNA synthetases.
pubmed doi rcsb
molecule tags Rna binding protein
molecule keywords PROTEIN (50S RIBOSOMAL PROTEIN L25)
total genus 15
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 1999-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01386 Ribosomal_L25p Ribosomal L25p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 1b75A00
4U67S 4JYZA 1QRUA 2ZJQS 1GTRA 4JXZA 1D6KA 5DM7S 5BNZA 5GAEW 5DM6S 5JVHS 4WF9S 1GTSA 3CF5S 3PIOS 2RE8A 4WFBS 1O0BA 5JVGS 1EUQA 1ZJWA 4P2BA 1EUYA 1QTQA 1FEUA 1B75A 4JXXA 1EXDA 4WCES 4IOCS 5IZNA 3PIPS 4IO9S 1NYLA 5GAGW 2RD2A 1QRTA 4IOAS 3J7ZV 4UY88 4H3SA 3AIIA 2ZJPS 1O0CA 4WFAS 1QRSA 1DFUP 5HL7S 3DLLS 4WFNS 2ZJRS 5GADW 5GAHW 2HZ7A
chains in the Genus database with same CATH superfamily
4U67S 4JYZA 1QRUA 2EGVA 1NXZA 2ZJQS 1GTRA 4JXZA 1D6KA 5DM7S 5BNZA 5GAEW 3W2WB 5DM6S 5JVHS 3KW2A 1GTSA 3X1LB 4WF9S 3CF5S 3PIOS 2RE8A 4WFBS 1O0BA 5JVGS 1EUQA 1ZJWA 4P2BA 1V6ZA 1EUYA 2NWAA 1QTQA 1FEUA 1B75A 2CX8A 2AE0X 4L69A 2EGWA 4WCES 5IZNA 4JXXA 3PIPS 1UDXA 4IO9S 4IOCS 1NYLA 5GAGW 2RD2A 1QRTA 4IOAS 3J7ZV 1VHYA 4UY88 4J3CA 4H3SA 3W2VB 4E8BA 1Z85A 2PNWA 3AIIA 2ZJPS 2PICA 2G5DA 2GAEA 2PJJA 4WFNS 1O0CA 4V194 4WFAS 5GADW 1QRSA 1DFUP 1VHKA 2Z0YA 5HL7S 3DLLS 3CZBA 1EXDA 4H4KA 2ZJRS 2PI8A 2G6GA 5GAHW 2HZ7A
chains in the Genus database with same CATH topology
4U67S 4JYZA 2HZ7A 1QRUA 2ZJQS 1GTRA 4JXZA 1D6KA 5DM7S 5BNZA 5GAEW 5DM6S 3W2WB 5JVHS 4WF9S 1GTSA 3CF5S 3PIOS 2RE8A 4WFBS 1O0BA 5JVGS 1EUQA 1ZJWA 1EUYA 1QTQA 1FEUA 1B75A 4JXXA 1EXDA 4WCES 4IOCS 5IZNA 3PIPS 1UDXA 4IO9S 1NYLA 5GAGW 2RD2A 1QRTA 4IOAS 3J7ZV 4UY88 4H3SA 3W2VB 3X1LB 3AIIA 2ZJPS 1O0CA 4V194 4WFAS 1QRSA 1DFUP 5HL7S 3DLLS 4WFNS 2ZJRS 5GADW 5GAHW 4P2BA 4H4KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4U67 S;  4JYZ A;  1QRU A;  2ZJQ S;  1GTR A;  4JXZ A;  1D6K A;  5DM7 S;  5BNZ A;  5GAE W;  5DM6 S;  5JVH S;  4WF9 S;  1GTS A;  3CF5 S;  3PIO S;  2RE8 A;  4WFB S;  1O0B A;  5JVG S;  1EUQ A;  1ZJW A;  4P2B A;  1EUY A;  1QTQ A;  1FEU A;  1B75 A;  4JXX A;  1EXD A;  4WCE S;  4IOC S;  5IZN A;  3PIP S;  4IO9 S;  1NYL A;  5GAG W;  2RD2 A;  1QRT A;  4IOA S;  3J7Z V;  4UY8 8;  4H3S A;  3AII A;  2ZJP S;  1O0C A;  4WFA S;  1QRS A;  1DFU P;  5HL7 S;  3DLL S;  4WFN S;  2ZJR S;  5GAD W;  5GAH W;  2HZ7 A; 
#chains in the Genus database with same CATH topology
 4U67 S;  4JYZ A;  1QRU A;  2EGV A;  1NXZ A;  2ZJQ S;  1GTR A;  4JXZ A;  1D6K A;  5DM7 S;  5BNZ A;  5GAE W;  3W2W B;  5DM6 S;  5JVH S;  3KW2 A;  1GTS A;  3X1L B;  4WF9 S;  3CF5 S;  3PIO S;  2RE8 A;  4WFB S;  1O0B A;  5JVG S;  1EUQ A;  1ZJW A;  4P2B A;  1V6Z A;  1EUY A;  2NWA A;  1QTQ A;  1FEU A;  1B75 A;  2CX8 A;  2AE0 X;  4L69 A;  2EGW A;  4WCE S;  5IZN A;  4JXX A;  3PIP S;  1UDX A;  4IO9 S;  4IOC S;  1NYL A;  5GAG W;  2RD2 A;  1QRT A;  4IOA S;  3J7Z V;  1VHY A;  4UY8 8;  4J3C A;  4H3S A;  3W2V B;  4E8B A;  1Z85 A;  2PNW A;  3AII A;  2ZJP S;  2PIC A;  2G5D A;  2GAE A;  2PJJ A;  4WFN S;  1O0C A;  4V19 4;  4WFA S;  5GAD W;  1QRS A;  1DFU P;  1VHK A;  2Z0Y A;  5HL7 S;  3DLL S;  3CZB A;  1EXD A;  4H4K A;  2ZJR S;  2PI8 A;  2G6G A;  5GAH W;  2HZ7 A; 
#chains in the Genus database with same CATH homology
 4U67 S;  4JYZ A;  2HZ7 A;  1QRU A;  2ZJQ S;  1GTR A;  4JXZ A;  1D6K A;  5DM7 S;  5BNZ A;  5GAE W;  5DM6 S;  3W2W B;  5JVH S;  4WF9 S;  1GTS A;  3CF5 S;  3PIO S;  2RE8 A;  4WFB S;  1O0B A;  5JVG S;  1EUQ A;  1ZJW A;  1EUY A;  1QTQ A;  1FEU A;  1B75 A;  4JXX A;  1EXD A;  4WCE S;  4IOC S;  5IZN A;  3PIP S;  1UDX A;  4IO9 S;  1NYL A;  5GAG W;  2RD2 A;  1QRT A;  4IOA S;  3J7Z V;  4UY8 8;  4H3S A;  3W2V B;  3X1L B;  3AII A;  2ZJP S;  1O0C A;  4V19 4;  4WFA S;  1QRS A;  1DFU P;  5HL7 S;  3DLL S;  4WFN S;  2ZJR S;  5GAD W;  5GAH W;  4P2B A;  4H4K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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