5GADW

Rnc-srp-sr complex early state
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
94
structure length
94
Chain Sequence
b'MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ESRP 4.5S RNA
publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
molecule tags Ribosome
total genus 23
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2015-11-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF01386 Ribosomal_L25p Ribosomal L25p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 5gadW00
4JXZA 5GAEW 4WFNS 4WFAS 1QRTA 1FEUA 1O0BA 4UY88 1EUQA 2ZJPS 3CF5S 5GAHW 1D6KA 1GTRA 5GAGW 1EUYA 1QRUA 1B75A 1GTSA 4IOCS 2HZ7A 3J7ZV 3PIPS 4WCES 5IZNA 2ZJRS 5JVHS 5HL7S 1QTQA 1EXDA 4JYZA 1ZJWA 4P2BA 5DM6S 5DM7S 5BNZA 5JVGS 1DFUP 5GADW 2RD2A 4WFBS 4IO9S 3DLLS 3AIIA 1O0CA 1QRSA 4IOAS 2RE8A 4WF9S 4H3SA 4U67S 2ZJQS 3PIOS 1NYLA 4JXXA
chains in the Genus database with same CATH superfamily
4JXZA 4WFAS 1QRTA 3W2WB 2Z0YA 2ZJPS 1UDXA 1VHKA 1EUYA 1QRUA 1GTSA 2HZ7A 4WCES 2ZJRS 5JVHS 1QTQA 2PICA 5DM6S 5DM7S 3X1LB 4IO9S 1QRSA 2ZJQS 2PJJA 4J3CA 3KW2A 1O0BA 1Z85A 3CF5S 5HL7S 1ZJWA 4P2BA 5BNZA 5JVGS 5GADW 2EGWA 3DLLS 2AE0X 3AIIA 4H3SA 3PIOS 1NYLA 5GAEW 3W2VB 4H4KA 1V6ZA 2EGVA 1NXZA 5GAGW 4L69A 4IOCS 3J7ZV 5IZNA 1DFUP 4E8BA 2PI8A 4U67S 4JXXA 1FEUA 4WFNS 2NWAA 1VHYA 2GAEA 4UY88 2PNWA 1EUQA 3CZBA 5GAHW 1D6KA 1GTRA 4V194 2CX8A 2G5DA 1B75A 3PIPS 1EXDA 4JYZA 2RD2A 4WFBS 1O0CA 4IOAS 2RE8A 4WF9S 2G6GA
chains in the Genus database with same CATH topology
4JXZA 5GAEW 4WFNS 4WFAS 1QRTA 1FEUA 3W2WB 1O0BA 4UY88 3W2VB 1EUQA 4H4KA 2ZJPS 1UDXA 3CF5S 5GAHW 1D6KA 1GTRA 4V194 5GAGW 1EUYA 1QRUA 1B75A 1GTSA 4IOCS 2HZ7A 3J7ZV 3PIPS 4WCES 5IZNA 2ZJRS 5JVHS 5HL7S 1QTQA 1EXDA 4JYZA 1ZJWA 4P2BA 5DM6S 5DM7S 5BNZA 5JVGS 3X1LB 5GADW 2RD2A 4WFBS 4IO9S 1DFUP 3DLLS 3AIIA 1O0CA 1QRSA 4IOAS 2RE8A 4WF9S 4H3SA 4U67S 2ZJQS 3PIOS 1NYLA 4JXXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JXZ A;  5GAE W;  4WFN S;  4WFA S;  1QRT A;  1FEU A;  1O0B A;  4UY8 8;  1EUQ A;  2ZJP S;  3CF5 S;  5GAH W;  1D6K A;  1GTR A;  5GAG W;  1EUY A;  1QRU A;  1B75 A;  1GTS A;  4IOC S;  2HZ7 A;  3J7Z V;  3PIP S;  4WCE S;  5IZN A;  2ZJR S;  5JVH S;  5HL7 S;  1QTQ A;  1EXD A;  4JYZ A;  1ZJW A;  4P2B A;  5DM6 S;  5DM7 S;  5BNZ A;  5JVG S;  1DFU P;  5GAD W;  2RD2 A;  4WFB S;  4IO9 S;  3DLL S;  3AII A;  1O0C A;  1QRS A;  4IOA S;  2RE8 A;  4WF9 S;  4H3S A;  4U67 S;  2ZJQ S;  3PIO S;  1NYL A;  4JXX A; 
#chains in the Genus database with same CATH topology
 4JXZ A;  4WFA S;  1QRT A;  3W2W B;  2Z0Y A;  2ZJP S;  1UDX A;  1VHK A;  1EUY A;  1QRU A;  1GTS A;  2HZ7 A;  4WCE S;  2ZJR S;  5JVH S;  1QTQ A;  2PIC A;  5DM6 S;  5DM7 S;  3X1L B;  4IO9 S;  1QRS A;  2ZJQ S;  2PJJ A;  4J3C A;  3KW2 A;  1O0B A;  1Z85 A;  3CF5 S;  5HL7 S;  1ZJW A;  4P2B A;  5BNZ A;  5JVG S;  5GAD W;  2EGW A;  3DLL S;  2AE0 X;  3AII A;  4H3S A;  3PIO S;  1NYL A;  5GAE W;  3W2V B;  4H4K A;  1V6Z A;  2EGV A;  1NXZ A;  5GAG W;  4L69 A;  4IOC S;  3J7Z V;  5IZN A;  1DFU P;  4E8B A;  2PI8 A;  4U67 S;  4JXX A;  1FEU A;  4WFN S;  2NWA A;  1VHY A;  2GAE A;  4UY8 8;  2PNW A;  1EUQ A;  3CZB A;  5GAH W;  1D6K A;  1GTR A;  4V19 4;  2CX8 A;  2G5D A;  1B75 A;  3PIP S;  1EXD A;  4JYZ A;  2RD2 A;  4WFB S;  1O0C A;  4IOA S;  2RE8 A;  4WF9 S;  2G6G A; 
#chains in the Genus database with same CATH homology
 4JXZ A;  5GAE W;  4WFN S;  4WFA S;  1QRT A;  1FEU A;  3W2W B;  1O0B A;  4UY8 8;  3W2V B;  1EUQ A;  4H4K A;  2ZJP S;  1UDX A;  3CF5 S;  5GAH W;  1D6K A;  1GTR A;  4V19 4;  5GAG W;  1EUY A;  1QRU A;  1B75 A;  1GTS A;  4IOC S;  2HZ7 A;  3J7Z V;  3PIP S;  4WCE S;  5IZN A;  2ZJR S;  5JVH S;  5HL7 S;  1QTQ A;  1EXD A;  4JYZ A;  1ZJW A;  4P2B A;  5DM6 S;  5DM7 S;  5BNZ A;  5JVG S;  3X1L B;  5GAD W;  2RD2 A;  4WFB S;  4IO9 S;  1DFU P;  3DLL S;  3AII A;  1O0C A;  1QRS A;  4IOA S;  2RE8 A;  4WF9 S;  4H3S A;  4U67 S;  2ZJQ S;  3PIO S;  1NYL A;  4JXX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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