5GADW

Rnc-srp-sr complex early state
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
94
structure length
94
Chain Sequence
MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords ESRP 4.5S RNA
publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
total genus 23
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2015-11-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF01386 Ribosomal_L25p Ribosomal L25p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 5gadW00
1EXDA 5HL7S 1QRTA 1EUYA 1DFUP 3PIPS 4WFBS 1GTRA 1O0CA 1EUQA 4JXZA 5IZNA 4H3SA 5DM6S 5GAGW 2RE8A 4WF9S 4IOCS 1B75A 2ZJPS 4WFNS 3AIIA 2RD2A 4JYZA 1QTQA 1NYLA 4WFAS 5DM7S 4IO9S 4U67S 1O0BA 2HZ7A 5GADW 3PIOS 3DLLS 1QRUA 4UY88 5JVGS 5GAHW 5GAEW 5JVHS 3CF5S 5BNZA 1ZJWA 1GTSA 1D6KA 2ZJRS 4WCES 1QRSA 1FEUA 2ZJQS 4P2BA 3J7ZV 4IOAS 4JXXA
chains in the Genus database with same CATH superfamily
1Z85A 5HL7S 1EUYA 1EUQA 4JXZA 2EGWA 4H3SA 2EGVA 2ZJPS 2GAEA 3KW2A 5GADW 1QRUA 5JVGS 5GAHW 5BNZA 1V6ZA 4WCES 2PI8A 2PJJA 3J7ZV 4IOAS 1EXDA 1QRTA 2Z0YA 4WFBS 1VHYA 1O0CA 5IZNA 4E8BA 4WF9S 2RD2A 4JYZA 1NXZA 1NYLA 1QTQA 4UY88 3PIOS 1GTSA 1FEUA 3W2WB 3PIPS 5GAGW 5DM6S 4IOCS 1B75A 4WFNS 4WFAS 5DM7S 4IO9S 2G5DA 3DLLS 5GAEW 3CF5S 1D6KA 3X1LB 1QRSA 4H4KA 4JXXA 2CX8A 1DFUP 4J3CA 2AE0X 1GTRA 2PNWA 2RE8A 2G6GA 3AIIA 1VHKA 3W2VB 4U67S 1O0BA 2HZ7A 3CZBA 1ZJWA 5JVHS 2PICA 2ZJRS 2ZJQS 4P2BA 1UDXA 2NWAA 4V194 4L69A
chains in the Genus database with same CATH topology
1EXDA 3W2WB 5HL7S 1QRTA 1EUYA 1DFUP 3PIPS 4WFBS 1GTRA 1O0CA 1EUQA 4JXZA 5IZNA 4H3SA 5DM6S 5GAGW 2RE8A 4WF9S 4IOCS 1B75A 2ZJPS 4WFNS 3AIIA 2RD2A 4JYZA 1QTQA 1NYLA 4WFAS 5DM7S 4IO9S 3W2VB 4U67S 1O0BA 2HZ7A 5GADW 3PIOS 3DLLS 1QRUA 4UY88 5JVGS 5GAHW 5GAEW 5JVHS 3CF5S 5BNZA 1ZJWA 1GTSA 1D6KA 2ZJRS 3X1LB 4WCES 1QRSA 1FEUA 2ZJQS 4P2BA 1UDXA 4V194 4H4KA 3J7ZV 4IOAS 4JXXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EXD A;  5HL7 S;  1QRT A;  1EUY A;  1DFU P;  3PIP S;  4WFB S;  1GTR A;  1O0C A;  1EUQ A;  4JXZ A;  5IZN A;  4H3S A;  5DM6 S;  5GAG W;  2RE8 A;  4WF9 S;  4IOC S;  1B75 A;  2ZJP S;  4WFN S;  3AII A;  2RD2 A;  4JYZ A;  1QTQ A;  1NYL A;  4WFA S;  5DM7 S;  4IO9 S;  4U67 S;  1O0B A;  2HZ7 A;  5GAD W;  3PIO S;  3DLL S;  1QRU A;  4UY8 8;  5JVG S;  5GAH W;  5GAE W;  5JVH S;  3CF5 S;  5BNZ A;  1ZJW A;  1GTS A;  1D6K A;  2ZJR S;  4WCE S;  1QRS A;  1FEU A;  2ZJQ S;  4P2B A;  3J7Z V;  4IOA S;  4JXX A; 
#chains in the Genus database with same CATH topology
 1Z85 A;  5HL7 S;  1EUY A;  1EUQ A;  4JXZ A;  2EGW A;  4H3S A;  2EGV A;  2ZJP S;  2GAE A;  3KW2 A;  5GAD W;  1QRU A;  5JVG S;  5GAH W;  5BNZ A;  1V6Z A;  4WCE S;  2PI8 A;  2PJJ A;  3J7Z V;  4IOA S;  1EXD A;  1QRT A;  2Z0Y A;  4WFB S;  1VHY A;  1O0C A;  5IZN A;  4E8B A;  4WF9 S;  2RD2 A;  4JYZ A;  1NXZ A;  1NYL A;  1QTQ A;  4UY8 8;  3PIO S;  1GTS A;  1FEU A;  3W2W B;  3PIP S;  5GAG W;  5DM6 S;  4IOC S;  1B75 A;  4WFN S;  4WFA S;  5DM7 S;  4IO9 S;  2G5D A;  3DLL S;  5GAE W;  3CF5 S;  1D6K A;  3X1L B;  1QRS A;  4H4K A;  4JXX A;  2CX8 A;  1DFU P;  4J3C A;  2AE0 X;  1GTR A;  2PNW A;  2RE8 A;  2G6G A;  3AII A;  1VHK A;  3W2V B;  4U67 S;  1O0B A;  2HZ7 A;  3CZB A;  1ZJW A;  5JVH S;  2PIC A;  2ZJR S;  2ZJQ S;  4P2B A;  1UDX A;  2NWA A;  4V19 4;  4L69 A; 
#chains in the Genus database with same CATH homology
 1EXD A;  3W2W B;  5HL7 S;  1QRT A;  1EUY A;  1DFU P;  3PIP S;  4WFB S;  1GTR A;  1O0C A;  1EUQ A;  4JXZ A;  5IZN A;  4H3S A;  5DM6 S;  5GAG W;  2RE8 A;  4WF9 S;  4IOC S;  1B75 A;  2ZJP S;  4WFN S;  3AII A;  2RD2 A;  4JYZ A;  1QTQ A;  1NYL A;  4WFA S;  5DM7 S;  4IO9 S;  3W2V B;  4U67 S;  1O0B A;  2HZ7 A;  5GAD W;  3PIO S;  3DLL S;  1QRU A;  4UY8 8;  5JVG S;  5GAH W;  5GAE W;  5JVH S;  3CF5 S;  5BNZ A;  1ZJW A;  1GTS A;  1D6K A;  2ZJR S;  3X1L B;  4WCE S;  1QRS A;  1FEU A;  2ZJQ S;  4P2B A;  1UDX A;  4V19 4;  4H4K A;  3J7Z V;  4IOA S;  4JXX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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