5GADW

Rnc-srp-sr complex early state
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
94
structure length
94
Chain Sequence
MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords ESRP 4.5S RNA
total genus 23
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2015-11-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF01386 Ribosomal_L25p Ribosomal L25p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 5gadW00
4JYZA 4JXZA 5JVGS 5HL7S 2ZJQS 1QRTA 2ZJRS 1NYLA 5BNZA 1QRSA 2RE8A 4WCES 1ZJWA 4UY88 5GAEW 1O0CA 4JXXA 5JVHS 4U67S 4IOAS 5GAHW 1GTSA 3CF5S 4WFNS 1EXDA 5GADW 4IOCS 4WFAS 2ZJPS 1O0BA 1GTRA 5IZNA 2HZ7A 1EUYA 1QTQA 4H3SA 3PIPS 2RD2A 5GAGW 3J7ZV 4IO9S 1EUQA 4P2BA 4WFBS 5DM6S 1DFUP 1B75A 1QRUA 1D6KA 3AIIA 3PIOS 5DM7S 4WF9S 3DLLS 1FEUA
chains in the Genus database with same CATH superfamily
3CZBA 4JYZA 4JXZA 5JVGS 3X1LB 5HL7S 2ZJQS 1QRTA 4V194 2NWAA 2ZJRS 2G5DA 1NYLA 2PNWA 4E8BA 2G6GA 2EGVA 5BNZA 4H4KA 1QRSA 2RE8A 4WCES 1ZJWA 4UY88 5GAEW 2AE0X 2PI8A 4L69A 1O0CA 4JXXA 5JVHS 2CX8A 3DLLS 4U67S 4IOAS 1FEUA 5GAHW 1GTSA 2PJJA 1UDXA 4WFNS 3CF5S 1EXDA 5GADW 4IOCS 4WFAS 2GAEA 2ZJPS 1O0BA 5IZNA 1GTRA 3KW2A 1NXZA 2HZ7A 1EUYA 1QTQA 4H3SA 3PIPS 2RD2A 5GAGW 3J7ZV 4IO9S 1EUQA 4P2BA 1VHYA 3W2WB 5DM6S 4WFBS 1DFUP 2Z0YA 4J3CA 2EGWA 1B75A 1V6ZA 1VHKA 1QRUA 1D6KA 2PICA 3AIIA 5DM7S 3PIOS 4WF9S 3W2VB 1Z85A
chains in the Genus database with same CATH topology
4JYZA 4JXZA 5JVGS 5HL7S 2ZJQS 1QRTA 4V194 2ZJRS 1NYLA 5BNZA 4H4KA 1QRSA 2RE8A 4WCES 1ZJWA 4UY88 5GAEW 1O0CA 4JXXA 5JVHS 3DLLS 4U67S 4IOAS 5GAHW 1GTSA 3CF5S 1UDXA 4WFNS 1EXDA 5GADW 4IOCS 4WFAS 2ZJPS 1O0BA 1GTRA 5IZNA 2HZ7A 1EUYA 1QTQA 4H3SA 3PIPS 2RD2A 5GAGW 3J7ZV 4IO9S 1EUQA 4P2BA 3W2WB 5DM6S 4WFBS 1DFUP 1B75A 1QRUA 1D6KA 3AIIA 3PIOS 5DM7S 3X1LB 4WF9S 3W2VB 1FEUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JYZ A;  4JXZ A;  5JVG S;  5HL7 S;  2ZJQ S;  1QRT A;  2ZJR S;  1NYL A;  5BNZ A;  1QRS A;  2RE8 A;  4WCE S;  1ZJW A;  4UY8 8;  5GAE W;  1O0C A;  4JXX A;  5JVH S;  4U67 S;  4IOA S;  5GAH W;  1GTS A;  3CF5 S;  4WFN S;  1EXD A;  5GAD W;  4IOC S;  4WFA S;  2ZJP S;  1O0B A;  1GTR A;  5IZN A;  2HZ7 A;  1EUY A;  1QTQ A;  4H3S A;  3PIP S;  2RD2 A;  5GAG W;  3J7Z V;  4IO9 S;  1EUQ A;  4P2B A;  4WFB S;  5DM6 S;  1DFU P;  1B75 A;  1QRU A;  1D6K A;  3AII A;  3PIO S;  5DM7 S;  4WF9 S;  3DLL S;  1FEU A; 
#chains in the Genus database with same CATH topology
 3CZB A;  4JYZ A;  4JXZ A;  5JVG S;  3X1L B;  5HL7 S;  2ZJQ S;  1QRT A;  4V19 4;  2NWA A;  2ZJR S;  2G5D A;  1NYL A;  2PNW A;  4E8B A;  2G6G A;  2EGV A;  5BNZ A;  4H4K A;  1QRS A;  2RE8 A;  4WCE S;  1ZJW A;  4UY8 8;  5GAE W;  2AE0 X;  2PI8 A;  4L69 A;  1O0C A;  4JXX A;  5JVH S;  2CX8 A;  3DLL S;  4U67 S;  4IOA S;  1FEU A;  5GAH W;  1GTS A;  2PJJ A;  1UDX A;  4WFN S;  3CF5 S;  1EXD A;  5GAD W;  4IOC S;  4WFA S;  2GAE A;  2ZJP S;  1O0B A;  5IZN A;  1GTR A;  3KW2 A;  1NXZ A;  2HZ7 A;  1EUY A;  1QTQ A;  4H3S A;  3PIP S;  2RD2 A;  5GAG W;  3J7Z V;  4IO9 S;  1EUQ A;  4P2B A;  1VHY A;  3W2W B;  5DM6 S;  4WFB S;  1DFU P;  2Z0Y A;  4J3C A;  2EGW A;  1B75 A;  1V6Z A;  1VHK A;  1QRU A;  1D6K A;  2PIC A;  3AII A;  5DM7 S;  3PIO S;  4WF9 S;  3W2V B;  1Z85 A; 
#chains in the Genus database with same CATH homology
 4JYZ A;  4JXZ A;  5JVG S;  5HL7 S;  2ZJQ S;  1QRT A;  4V19 4;  2ZJR S;  1NYL A;  5BNZ A;  4H4K A;  1QRS A;  2RE8 A;  4WCE S;  1ZJW A;  4UY8 8;  5GAE W;  1O0C A;  4JXX A;  5JVH S;  3DLL S;  4U67 S;  4IOA S;  5GAH W;  1GTS A;  3CF5 S;  1UDX A;  4WFN S;  1EXD A;  5GAD W;  4IOC S;  4WFA S;  2ZJP S;  1O0B A;  1GTR A;  5IZN A;  2HZ7 A;  1EUY A;  1QTQ A;  4H3S A;  3PIP S;  2RD2 A;  5GAG W;  3J7Z V;  4IO9 S;  1EUQ A;  4P2B A;  3W2W B;  5DM6 S;  4WFB S;  1DFU P;  1B75 A;  1QRU A;  1D6K A;  3AII A;  3PIO S;  5DM7 S;  3X1L B;  4WF9 S;  3W2V B;  1FEU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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