5GADW

Rnc-srp-sr complex early state
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
94
structure length
94
Chain Sequence
MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ESRP 4.5S RNA
publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
molecule tags Ribosome
total genus 23
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2015-11-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF01386 Ribosomal_L25p Ribosomal L25p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 5gadW00
5GAGW 1GTRA 2RE8A 4WCES 4P2BA 4UY88 1DFUP 1B75A 2RD2A 1D6KA 4U67S 1O0BA 3J7ZV 4JXXA 3PIOS 1QTQA 5GADW 1FEUA 1QRTA 2ZJRS 5GAEW 3CF5S 1EUQA 1O0CA 1NYLA 5JVHS 4JXZA 4H3SA 4WFNS 5DM7S 5BNZA 5DM6S 1EUYA 5JVGS 4JYZA 2HZ7A 3PIPS 4IOAS 3AIIA 4WF9S 2ZJQS 4WFAS 2ZJPS 1ZJWA 4IO9S 4WFBS 5GAHW 5IZNA 3DLLS 5HL7S 4IOCS 1GTSA 1EXDA 1QRSA 1QRUA
chains in the Genus database with same CATH superfamily
1GTRA 1DFUP 2RD2A 1D6KA 1Z85A 1V6ZA 3PIOS 4H4KA 2ZJRS 1NYLA 5JVHS 4V194 2NWAA 4JYZA 3AIIA 4WF9S 2GAEA 4WFAS 2PJJA 5GAHW 5IZNA 5HL7S 4IOCS 5GAGW 4P2BA 2CX8A 1O0BA 5GAEW 3CF5S 1EUQA 5DM7S 3KW2A 1VHYA 2HZ7A 2G6GA 2ZJPS 1ZJWA 3DLLS 1GTSA 3CZBA 1QRUA 2RE8A 4WCES 1B75A 4J3CA 4JXXA 1VHKA 1QTQA 5GADW 2Z0YA 4JXZA 4WFNS 3PIPS 4IOAS 1UDXA 2ZJQS 4IO9S 3X1LB 4WFBS 2G5DA 1NXZA 4UY88 3W2WB 2EGWA 4U67S 3J7ZV 4E8BA 1FEUA 1QRTA 1O0CA 3W2VB 4H3SA 5BNZA 5DM6S 2PI8A 2PICA 1EUYA 5JVGS 4L69A 2EGVA 2AE0X 1QRSA 1EXDA 2PNWA
chains in the Genus database with same CATH topology
5GAGW 1GTRA 2RE8A 4WCES 4P2BA 4UY88 1DFUP 1B75A 2RD2A 1D6KA 3W2WB 4U67S 1O0BA 3J7ZV 4JXXA 3PIOS 1QTQA 4H4KA 5GADW 1FEUA 1QRTA 2ZJRS 5GAEW 3CF5S 1EUQA 1O0CA 1NYLA 5JVHS 4JXZA 3W2VB 4H3SA 4WFNS 4V194 5DM7S 5BNZA 5DM6S 1EUYA 5JVGS 4JYZA 2HZ7A 3PIPS 4IOAS 3AIIA 1UDXA 4WF9S 2ZJQS 4WFAS 2ZJPS 1ZJWA 4IO9S 3X1LB 4WFBS 5GAHW 5IZNA 3DLLS 5HL7S 4IOCS 1GTSA 1EXDA 1QRSA 1QRUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GAG W;  1GTR A;  2RE8 A;  4WCE S;  4P2B A;  4UY8 8;  1DFU P;  1B75 A;  2RD2 A;  1D6K A;  4U67 S;  1O0B A;  3J7Z V;  4JXX A;  3PIO S;  1QTQ A;  5GAD W;  1FEU A;  1QRT A;  2ZJR S;  5GAE W;  3CF5 S;  1EUQ A;  1O0C A;  1NYL A;  5JVH S;  4JXZ A;  4H3S A;  4WFN S;  5DM7 S;  5BNZ A;  5DM6 S;  1EUY A;  5JVG S;  4JYZ A;  2HZ7 A;  3PIP S;  4IOA S;  3AII A;  4WF9 S;  2ZJQ S;  4WFA S;  2ZJP S;  1ZJW A;  4IO9 S;  4WFB S;  5GAH W;  5IZN A;  3DLL S;  5HL7 S;  4IOC S;  1GTS A;  1EXD A;  1QRS A;  1QRU A; 
#chains in the Genus database with same CATH topology
 1GTR A;  1DFU P;  2RD2 A;  1D6K A;  1Z85 A;  1V6Z A;  3PIO S;  4H4K A;  2ZJR S;  1NYL A;  5JVH S;  4V19 4;  2NWA A;  4JYZ A;  3AII A;  4WF9 S;  2GAE A;  4WFA S;  2PJJ A;  5GAH W;  5IZN A;  5HL7 S;  4IOC S;  5GAG W;  4P2B A;  2CX8 A;  1O0B A;  5GAE W;  3CF5 S;  1EUQ A;  5DM7 S;  3KW2 A;  1VHY A;  2HZ7 A;  2G6G A;  2ZJP S;  1ZJW A;  3DLL S;  1GTS A;  3CZB A;  1QRU A;  2RE8 A;  4WCE S;  1B75 A;  4J3C A;  4JXX A;  1VHK A;  1QTQ A;  5GAD W;  2Z0Y A;  4JXZ A;  4WFN S;  3PIP S;  4IOA S;  1UDX A;  2ZJQ S;  4IO9 S;  3X1L B;  4WFB S;  2G5D A;  1NXZ A;  4UY8 8;  3W2W B;  2EGW A;  4U67 S;  3J7Z V;  4E8B A;  1FEU A;  1QRT A;  1O0C A;  3W2V B;  4H3S A;  5BNZ A;  5DM6 S;  2PI8 A;  2PIC A;  1EUY A;  5JVG S;  4L69 A;  2EGV A;  2AE0 X;  1QRS A;  1EXD A;  2PNW A; 
#chains in the Genus database with same CATH homology
 5GAG W;  1GTR A;  2RE8 A;  4WCE S;  4P2B A;  4UY8 8;  1DFU P;  1B75 A;  2RD2 A;  1D6K A;  3W2W B;  4U67 S;  1O0B A;  3J7Z V;  4JXX A;  3PIO S;  1QTQ A;  4H4K A;  5GAD W;  1FEU A;  1QRT A;  2ZJR S;  5GAE W;  3CF5 S;  1EUQ A;  1O0C A;  1NYL A;  5JVH S;  4JXZ A;  3W2V B;  4H3S A;  4WFN S;  4V19 4;  5DM7 S;  5BNZ A;  5DM6 S;  1EUY A;  5JVG S;  4JYZ A;  2HZ7 A;  3PIP S;  4IOA S;  3AII A;  1UDX A;  4WF9 S;  2ZJQ S;  4WFA S;  2ZJP S;  1ZJW A;  4IO9 S;  3X1L B;  4WFB S;  5GAH W;  5IZN A;  3DLL S;  5HL7 S;  4IOC S;  1GTS A;  1EXD A;  1QRS A;  1QRU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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