3CF5S

Thiopeptide antibiotic thiostrepton bound to the large ribosomal subunit of deinococcus radiodurans
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
175
structure length
175
Chain Sequence
MELTAKPRTPKQKLDESMIAAVAYNKENNVSFALDRKAFDRAFRQQSTTGLFDITVEGGETFPALVKAVQMDKRKRAPIHVDFYMVTYGEPVEVSVPVHTTGRSQGEVQGGLVDIVVHNLQIVAPGPRRIPQELVVDVTKMNIGDHITAGDIKLPEGCTLAADPELTVVSVLPPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 50S RIBOSOMAL PROTEIN L33
publication title Translational Regulation Via L11: Molecular Switches on the Ribosome Turned on and Off by Thiostrepton and Micrococcin.
pubmed doi rcsb
molecule tags Ribosome/antibiotic
total genus 18
structure length 175
sequence length 175
ec nomenclature
pdb deposition date 2008-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF01386 Ribosomal_L25p Ribosomal L25p family
S PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 3cf5S01
2.170.120.20 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 Ribosomal protein L25, beta domain 3cf5S02
3PIOS 2ZJRS 3CF5S 1D6KA 1QRTA 1QRSA 5BNZA 1DFUP 4JXXA 4JXZA 1FEUA 4U67S 2ZJQS 5HL7S 3AIIA 5GADW 4IO9S 4IOCS 2RD2A 1ZJWA 5DM7S 1QRUA 1GTRA 1EUQA 1QTQA 5GAHW 1NYLA 1EUYA 2ZJPS 1O0BA 4H3SA 4WFAS 3J7ZV 5JVGS 1GTSA 4JYZA 5IZNA 4UY88 5DM6S 3DLLS 1B75A 2HZ7A 1EXDA 5JVHS 5GAGW 2RE8A 4IOAS 4WFNS 3PIPS 4P2BA 1O0CA 4WF9S 5GAEW 4WFBS 4WCES
chains in the Genus database with same CATH superfamily
3S1MC 2BE5A 1D6KA 1TWAC 3HOXC 2PJJA 5BNZA 2NVQC 4A3CC 2PNWA 3HKZD 4A3KC 4U67S 4BXXC 3PO3C 3I4NC 4E8BA 5GADW 4IOCS 4IO9S 2KQ1A 4C2MC 4G7HA 5IP9C 3PO2C 3HOUC 1SFOC 3S16C 5DM7S 5C44C 1K83C 5IYDC 3EQLA 1EUQA 4XLNA 4OIRA 4LJZA 3HOWC 2B63C 4Q5SA 1ZYRA 4H3SA 3M4OC 1I50C 5JVGS 3S1NC 1GTSA 2PMZD 4JK1A 3KW2A 2A69A 2AE0X 3W2VB 2NVXC 3DLLS 4LK1A 1NXZA 5IYBC 1B75A 4AYBD 2E2JC 3S2HC 1EXDA 2A68A 2L5NA 5JVHS 4LK0A 5GAGW 4IOAS 3CQZC 3PIPS 3S17C 4Q4ZA 2PICA 2O5JA 4WFBS 4OIOA 4WCES 3PIOS 3CF5S 1QRTA 2O5IA 1QRSA 1DFUP 2Y0SD 2G5DA 2PI8A 2JA8C 3AIIA 1Y1VC 3S14C 2RD2A 1ZJWA 4QIWD 4A3LC 3LYWA 4G7ZA 1TWHC 2A6EA 4XSZA 4OIQA 4X6AC 3RZDC 2NVTC 2G6GA 3S15C 3J7ZV 1HQMA 4A3BC 4A93C 1TWGC 3I4MC 5IZNA 4Y7NC 1VHYA 5C3EC 3GTQC 4KMUA 4QJVA 5C4JC 3CZBA 4V194 4MEXA 1I6VA 2R93C 1Z85A 2KPUA 2R7ZC 4WF9S 4OINA 2ZJRS 4JXXA 2JA5C 4YFXA 3S1QC 5C4XC 2ZJQS 2EGWA 2CX8A 5HL7S 3S1RC 5HQHA 3K7AC 2JA6C 3GTPC 1GTRA 3H3VD 4YFKA 3GTKC 1QTQA 5GAHW 1NYLA 4BBRC 1EUYA 2PA8D 4KN7A 4NOIA 3HOZC 3RZOC 2NWAA 4MEYA 4A3GC 1TWCC 4JYZA 5TMCA 4UY88 3GTOC 4YFNA 1BDFA 2NVYC 4G7OA 2WB1D 2L3UA 4BY1C 1UDXA 1IW7A 2E2HC 3FKIC 4YG2A 2E2IC 4WFNS 1O0CA 4P2BA 4C3IC 4A3JC 5GAEW 2RE8A 1YNJA 1Y1WC 4ZH4A 4C3HC 2KXYA 4JXZA 5IYCC 1FEUA 5IP7C 3GTJC 4J3CA 1VHKA 4XSXA 4C3JC 4LLGA 1SMYA 2CW0A 2JA7C 4Y52C 1QRUA 4A3DC 3H0GC 3M3YC 5FLMC 3HOYC 1I6HC 4H4KA 3WODA 1I3QC 2ZJPS 1O0BA 4WFAS 2VUMC 3HOVC 2EGVA 3GTMC 4BY7C 3X1LB 4A3IC 1V6ZA 5TMFA 2A6HA 3S2DC 2YU9C 1TWFC 1YNNA 5D4DA 1WCMC 4OIPA 5DM6S 4BBSC 4KN4A 4MQ9A 4A3EC 2HZ7A 4L69A 2GAEA 2WAQD 4A3FC 4A3MC 4XLPA 2R92C 3GTGC 3GTLC 4GZYA 3W2WB 3DXJA 2PPBA 1R9TC 2Z0YA
chains in the Genus database with same CATH topology
3PIOS 2ZJRS 3CF5S 1D6KA 1QRTA 1QRSA 5BNZA 3W2WB 4JXXA 4JXZA 1DFUP 1FEUA 4U67S 2ZJQS 5HL7S 3AIIA 5GADW 4IO9S 4IOCS 2RD2A 1ZJWA 5DM7S 1QRUA 1GTRA 1EUQA 4H4KA 1QTQA 5GAHW 1NYLA 1EUYA 2ZJPS 1O0BA 4H3SA 4WFAS 3J7ZV 5JVGS 3X1LB 1GTSA 4JYZA 5IZNA 4UY88 3W2VB 5DM6S 3DLLS 1B75A 2HZ7A 1EXDA 5JVHS 5GAGW 1UDXA 4V194 2RE8A 4IOAS 4WFNS 3PIPS 4P2BA 1O0CA 4WF9S 5GAEW 4WFBS 4WCES
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PIO S;  2ZJR S;  3CF5 S;  1D6K A;  1QRT A;  1QRS A;  5BNZ A;  1DFU P;  4JXX A;  4JXZ A;  1FEU A;  4U67 S;  2ZJQ S;  5HL7 S;  3AII A;  5GAD W;  4IO9 S;  4IOC S;  2RD2 A;  1ZJW A;  5DM7 S;  1QRU A;  1GTR A;  1EUQ A;  1QTQ A;  5GAH W;  1NYL A;  1EUY A;  2ZJP S;  1O0B A;  4H3S A;  4WFA S;  3J7Z V;  5JVG S;  1GTS A;  4JYZ A;  5IZN A;  4UY8 8;  5DM6 S;  3DLL S;  1B75 A;  2HZ7 A;  1EXD A;  5JVH S;  5GAG W;  2RE8 A;  4IOA S;  4WFN S;  3PIP S;  4P2B A;  1O0C A;  4WF9 S;  5GAE W;  4WFB S;  4WCE S; 
#chains in the Genus database with same CATH topology
 3S1M C;  2BE5 A;  1D6K A;  1TWA C;  3HOX C;  2PJJ A;  5BNZ A;  2NVQ C;  4A3C C;  2PNW A;  3HKZ D;  4A3K C;  4U67 S;  4BXX C;  3PO3 C;  3I4N C;  4E8B A;  5GAD W;  4IOC S;  4IO9 S;  2KQ1 A;  4C2M C;  4G7H A;  5IP9 C;  3PO2 C;  3HOU C;  1SFO C;  3S16 C;  5DM7 S;  5C44 C;  1K83 C;  5IYD C;  3EQL A;  1EUQ A;  4XLN A;  4OIR A;  4LJZ A;  3HOW C;  2B63 C;  4Q5S A;  1ZYR A;  4H3S A;  3M4O C;  1I50 C;  5JVG S;  3S1N C;  1GTS A;  2PMZ D;  4JK1 A;  3KW2 A;  2A69 A;  2AE0 X;  3W2V B;  2NVX C;  3DLL S;  4LK1 A;  1NXZ A;  5IYB C;  1B75 A;  4AYB D;  2E2J C;  3S2H C;  1EXD A;  2A68 A;  2L5N A;  5JVH S;  4LK0 A;  5GAG W;  4IOA S;  3CQZ C;  3PIP S;  3S17 C;  4Q4Z A;  2PIC A;  2O5J A;  4WFB S;  4OIO A;  4WCE S;  3PIO S;  3CF5 S;  1QRT A;  2O5I A;  1QRS A;  1DFU P;  2Y0S D;  2G5D A;  2PI8 A;  2JA8 C;  3AII A;  1Y1V C;  3S14 C;  2RD2 A;  1ZJW A;  4QIW D;  4A3L C;  3LYW A;  4G7Z A;  1TWH C;  2A6E A;  4XSZ A;  4OIQ A;  4X6A C;  3RZD C;  2NVT C;  2G6G A;  3S15 C;  3J7Z V;  1HQM A;  4A3B C;  4A93 C;  1TWG C;  3I4M C;  5IZN A;  4Y7N C;  1VHY A;  5C3E C;  3GTQ C;  4KMU A;  4QJV A;  5C4J C;  3CZB A;  4V19 4;  4MEX A;  1I6V A;  2R93 C;  1Z85 A;  2KPU A;  2R7Z C;  4WF9 S;  4OIN A;  2ZJR S;  4JXX A;  2JA5 C;  4YFX A;  3S1Q C;  5C4X C;  2ZJQ S;  2EGW A;  2CX8 A;  5HL7 S;  3S1R C;  5HQH A;  3K7A C;  2JA6 C;  3GTP C;  1GTR A;  3H3V D;  4YFK A;  3GTK C;  1QTQ A;  5GAH W;  1NYL A;  4BBR C;  1EUY A;  2PA8 D;  4KN7 A;  4NOI A;  3HOZ C;  3RZO C;  2NWA A;  4MEY A;  4A3G C;  1TWC C;  4JYZ A;  5TMC A;  4UY8 8;  3GTO C;  4YFN A;  1BDF A;  2NVY C;  4G7O A;  2WB1 D;  2L3U A;  4BY1 C;  1UDX A;  1IW7 A;  2E2H C;  3FKI C;  4YG2 A;  2E2I C;  4WFN S;  1O0C A;  4P2B A;  4C3I C;  4A3J C;  5GAE W;  2RE8 A;  1YNJ A;  1Y1W C;  4ZH4 A;  4C3H C;  2KXY A;  4JXZ A;  5IYC C;  1FEU A;  5IP7 C;  3GTJ C;  4J3C A;  1VHK A;  4XSX A;  4C3J C;  4LLG A;  1SMY A;  2CW0 A;  2JA7 C;  4Y52 C;  1QRU A;  4A3D C;  3H0G C;  3M3Y C;  5FLM C;  3HOY C;  1I6H C;  4H4K A;  3WOD A;  1I3Q C;  2ZJP S;  1O0B A;  4WFA S;  2VUM C;  3HOV C;  2EGV A;  3GTM C;  4BY7 C;  3X1L B;  4A3I C;  1V6Z A;  5TMF A;  2A6H A;  3S2D C;  2YU9 C;  1TWF C;  1YNN A;  5D4D A;  1WCM C;  4OIP A;  5DM6 S;  4BBS C;  4KN4 A;  4MQ9 A;  4A3E C;  2HZ7 A;  4L69 A;  2GAE A;  2WAQ D;  4A3F C;  4A3M C;  4XLP A;  2R92 C;  3GTG C;  3GTL C;  4GZY A;  3W2W B;  3DXJ A;  2PPB A;  1R9T C;  2Z0Y A; 
#chains in the Genus database with same CATH homology
 3PIO S;  2ZJR S;  3CF5 S;  1D6K A;  1QRT A;  1QRS A;  5BNZ A;  3W2W B;  4JXX A;  4JXZ A;  1DFU P;  1FEU A;  4U67 S;  2ZJQ S;  5HL7 S;  3AII A;  5GAD W;  4IO9 S;  4IOC S;  2RD2 A;  1ZJW A;  5DM7 S;  1QRU A;  1GTR A;  1EUQ A;  4H4K A;  1QTQ A;  5GAH W;  1NYL A;  1EUY A;  2ZJP S;  1O0B A;  4H3S A;  4WFA S;  3J7Z V;  5JVG S;  3X1L B;  1GTS A;  4JYZ A;  5IZN A;  4UY8 8;  3W2V B;  5DM6 S;  3DLL S;  1B75 A;  2HZ7 A;  1EXD A;  5JVH S;  5GAG W;  1UDX A;  4V19 4;  2RE8 A;  4IOA S;  4WFN S;  3PIP S;  4P2B A;  1O0C A;  4WF9 S;  5GAE W;  4WFB S;  4WCE S; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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