3CF5S

Thiopeptide antibiotic thiostrepton bound to the large ribosomal subunit of deinococcus radiodurans
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
175
structure length
175
Chain Sequence
MELTAKPRTPKQKLDESMIAAVAYNKENNVSFALDRKAFDRAFRQQSTTGLFDITVEGGETFPALVKAVQMDKRKRAPIHVDFYMVTYGEPVEVSVPVHTTGRSQGEVQGGLVDIVVHNLQIVAPGPRRIPQELVVDVTKMNIGDHITAGDIKLPEGCTLAADPELTVVSVLPPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/antibiotic
publication title Translational Regulation Via L11: Molecular Switches on the Ribosome Turned on and Off by Thiostrepton and Micrococcin.
pubmed doi rcsb
molecule keywords 50S RIBOSOMAL PROTEIN L33
total genus 18
structure length 175
sequence length 175
ec nomenclature
pdb deposition date 2008-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF01386 Ribosomal_L25p Ribosomal L25p family
S PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 3cf5S01
2.170.120.20 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 Ribosomal protein L25, beta domain 3cf5S02
4P2BA 5GADW 5GAHW 3J7ZV 3PIPS 1ZJWA 5BNZA 2RE8A 3DLLS 2ZJRS 1EXDA 4WCES 1GTRA 4U67S 1D6KA 2ZJQS 1O0BA 1EUYA 4WFNS 3AIIA 5IZNA 4IO9S 4H3SA 2ZJPS 4WF9S 1GTSA 1EUQA 4WFBS 2HZ7A 5JVHS 5DM7S 1B75A 1QRUA 1QTQA 2RD2A 4JXXA 1NYLA 1FEUA 4JYZA 5GAEW 1DFUP 1QRTA 3CF5S 4IOCS 4IOAS 5HL7S 1O0CA 4JXZA 5DM6S 3PIOS 1QRSA 4UY88 5JVGS 5GAGW 4WFAS
chains in the Genus database with same CATH superfamily
4A3GC 4LLGA 1SFOC 2CX8A 2JA7C 4L69A 1IW7A 5HQHA 3HOYC 1TWGC 5IP9C 4WCES 3S15C 1O0BA 2PNWA 1Z85A 2G5DA 3AIIA 4WFNS 2A68A 2PA8D 2GAEA 4QIWD 4A93C 4BBSC 2HZ7A 5JVHS 4GZYA 4XLPA 4KMUA 5IYCC 2BE5A 4Q5SA 1NXZA 4G7HA 2PJJA 1QRTA 4IOCS 4Y7NC 4IOAS 2E2HC 4OIOA 5TMCA 1TWFC 4MQ9A 4QJVA 3PIOS 3S14C 4OIRA 3S16C 4A3BC 2KPUA 3GTLC 3HKZD 3KW2A 2E2JC 3S1MC 4C2MC 4XSXA 2EGVA 3S1RC 1UDXA 2A6EA 2NVQC 2NVYC 5IYDC 4BY7C 1ZJWA 4J3CA 3S1NC 3M3YC 2O5JA 2G6GA 4Y52C 1VHYA 3GTJC 5C3EC 2ZJQS 3HOWC 4BXXC 1WCMC 5C4JC 3W2WB 5DM7S 4MEXA 2JA6C 4JXXA 4BY1C 3CQZC 1I50C 2WB1D 3I4MC 1TWHC 3GTGC 4LK1A 2NVXC 5HL7S 5D4DA 3GTKC 1TWCC 1QRSA 2PICA 4UY88 4YFKA 4BBRC 1HQMA 1YNJA 1R9TC 4C3JC 5TMFA 2R7ZC 4JYZA 4XLNA 4P2BA 1TWAC 5GADW 5GAHW 3J7ZV 4LK0A 3K7AC 4XSZA 5IYBC 4A3KC 3HOXC 2RE8A 2PMZD 4OIPA 2NVTC 3GTMC 3HOUC 1YNNA 2ZJRS 4A3FC 1EXDA 2R92C 1GTRA 2B63C 4U67S 1EUYA 4X6AC 2O5IA 1I3QC 4OIQA 4IO9S 4H3SA 4WF9S 2Y0SD 1GTSA 4WFBS 1Y1VC 1B75A 4C3IC 2NWAA 3GTPC 2R93C 3M4OC 1I6VA 1NYLA 1FEUA 2KQ1A 4ZH4A 4YFXA 3S2HC 4A3IC 1I6HC 4KN7A 3X1LB 4KN4A 3RZOC 2A69A 3PO3C 4A3EC 3RZDC 3S1QC 2A6HA 3GTOC 3DXJA 3H3VD 3S2DC 4A3JC 2EGWA 5JVGS 3H0GC 4C3HC 4Q4ZA 4A3MC 4OINA 2ZJPS 4WFAS 3PO2C 4G7ZA 4JK1A 3S17C 3PIPS 5C4XC 4A3CC 2JA8C 5BNZA 3DLLS 4A3LC 4NOIA 5FLMC 3WODA 2E2IC 3HOVC 1D6KA 3HOZC 2Z0YA 2KXYA 5IZNA 3GTQC 1Y1WC 4AYBD 1EUQA 2AE0X 3W2VB 2L5NA 1QRUA 1QTQA 2RD2A 4E8BA 3LYWA 2WAQD 4A3DC 5GAEW 2PI8A 2PPBA 1DFUP 3EQLA 3CF5S 1ZYRA 1SMYA 4V194 1O0CA 4YFNA 1VHKA 4JXZA 5DM6S 5IP7C 1K83C 5C44C 4YG2A 4H4KA 4G7OA 2VUMC 3CZBA 3I4NC 3FKIC 2JA5C 1BDFA 2YU9C 1V6ZA 2L3UA 4MEYA 2CW0A 5GAGW 4LJZA
chains in the Genus database with same CATH topology
4P2BA 5GADW 5GAHW 3J7ZV 3PIPS 1ZJWA 5BNZA 2RE8A 3DLLS 2ZJRS 1EXDA 4WCES 1GTRA 4U67S 1D6KA 2ZJQS 1O0BA 1EUYA 4WFNS 3AIIA 5IZNA 4IO9S 4H3SA 2ZJPS 4WF9S 1GTSA 1EUQA 4WFBS 2HZ7A 3W2WB 3W2VB 5DM7S 5JVHS 1B75A 1QRUA 1QTQA 2RD2A 4JXXA 1NYLA 1FEUA 4JYZA 5GAEW 1DFUP 1QRTA 3CF5S 4IOCS 4IOAS 4V194 5HL7S 1O0CA 3X1LB 4JXZA 5DM6S 3PIOS 4H4KA 1QRSA 4UY88 5JVGS 5GAGW 4WFAS 1UDXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4P2B A;  5GAD W;  5GAH W;  3J7Z V;  3PIP S;  1ZJW A;  5BNZ A;  2RE8 A;  3DLL S;  2ZJR S;  1EXD A;  4WCE S;  1GTR A;  4U67 S;  1D6K A;  2ZJQ S;  1O0B A;  1EUY A;  4WFN S;  3AII A;  5IZN A;  4IO9 S;  4H3S A;  2ZJP S;  4WF9 S;  1GTS A;  1EUQ A;  4WFB S;  2HZ7 A;  5JVH S;  5DM7 S;  1B75 A;  1QRU A;  1QTQ A;  2RD2 A;  4JXX A;  1NYL A;  1FEU A;  4JYZ A;  5GAE W;  1DFU P;  1QRT A;  3CF5 S;  4IOC S;  4IOA S;  5HL7 S;  1O0C A;  4JXZ A;  5DM6 S;  3PIO S;  1QRS A;  4UY8 8;  5JVG S;  5GAG W;  4WFA S; 
#chains in the Genus database with same CATH topology
 4A3G C;  4LLG A;  1SFO C;  2CX8 A;  2JA7 C;  4L69 A;  1IW7 A;  5HQH A;  3HOY C;  1TWG C;  5IP9 C;  4WCE S;  3S15 C;  1O0B A;  2PNW A;  1Z85 A;  2G5D A;  3AII A;  4WFN S;  2A68 A;  2PA8 D;  2GAE A;  4QIW D;  4A93 C;  4BBS C;  2HZ7 A;  5JVH S;  4GZY A;  4XLP A;  4KMU A;  5IYC C;  2BE5 A;  4Q5S A;  1NXZ A;  4G7H A;  2PJJ A;  1QRT A;  4IOC S;  4Y7N C;  4IOA S;  2E2H C;  4OIO A;  5TMC A;  1TWF C;  4MQ9 A;  4QJV A;  3PIO S;  3S14 C;  4OIR A;  3S16 C;  4A3B C;  2KPU A;  3GTL C;  3HKZ D;  3KW2 A;  2E2J C;  3S1M C;  4C2M C;  4XSX A;  2EGV A;  3S1R C;  1UDX A;  2A6E A;  2NVQ C;  2NVY C;  5IYD C;  4BY7 C;  1ZJW A;  4J3C A;  3S1N C;  3M3Y C;  2O5J A;  2G6G A;  4Y52 C;  1VHY A;  3GTJ C;  5C3E C;  2ZJQ S;  3HOW C;  4BXX C;  1WCM C;  5C4J C;  3W2W B;  5DM7 S;  4MEX A;  2JA6 C;  4JXX A;  4BY1 C;  3CQZ C;  1I50 C;  2WB1 D;  3I4M C;  1TWH C;  3GTG C;  4LK1 A;  2NVX C;  5HL7 S;  5D4D A;  3GTK C;  1TWC C;  1QRS A;  2PIC A;  4UY8 8;  4YFK A;  4BBR C;  1HQM A;  1YNJ A;  1R9T C;  4C3J C;  5TMF A;  2R7Z C;  4JYZ A;  4XLN A;  4P2B A;  1TWA C;  5GAD W;  5GAH W;  3J7Z V;  4LK0 A;  3K7A C;  4XSZ A;  5IYB C;  4A3K C;  3HOX C;  2RE8 A;  2PMZ D;  4OIP A;  2NVT C;  3GTM C;  3HOU C;  1YNN A;  2ZJR S;  4A3F C;  1EXD A;  2R92 C;  1GTR A;  2B63 C;  4U67 S;  1EUY A;  4X6A C;  2O5I A;  1I3Q C;  4OIQ A;  4IO9 S;  4H3S A;  4WF9 S;  2Y0S D;  1GTS A;  4WFB S;  1Y1V C;  1B75 A;  4C3I C;  2NWA A;  3GTP C;  2R93 C;  3M4O C;  1I6V A;  1NYL A;  1FEU A;  2KQ1 A;  4ZH4 A;  4YFX A;  3S2H C;  4A3I C;  1I6H C;  4KN7 A;  3X1L B;  4KN4 A;  3RZO C;  2A69 A;  3PO3 C;  4A3E C;  3RZD C;  3S1Q C;  2A6H A;  3GTO C;  3DXJ A;  3H3V D;  3S2D C;  4A3J C;  2EGW A;  5JVG S;  3H0G C;  4C3H C;  4Q4Z A;  4A3M C;  4OIN A;  2ZJP S;  4WFA S;  3PO2 C;  4G7Z A;  4JK1 A;  3S17 C;  3PIP S;  5C4X C;  4A3C C;  2JA8 C;  5BNZ A;  3DLL S;  4A3L C;  4NOI A;  5FLM C;  3WOD A;  2E2I C;  3HOV C;  1D6K A;  3HOZ C;  2Z0Y A;  2KXY A;  5IZN A;  3GTQ C;  1Y1W C;  4AYB D;  1EUQ A;  2AE0 X;  3W2V B;  2L5N A;  1QRU A;  1QTQ A;  2RD2 A;  4E8B A;  3LYW A;  2WAQ D;  4A3D C;  5GAE W;  2PI8 A;  2PPB A;  1DFU P;  3EQL A;  3CF5 S;  1ZYR A;  1SMY A;  4V19 4;  1O0C A;  4YFN A;  1VHK A;  4JXZ A;  5DM6 S;  5IP7 C;  1K83 C;  5C44 C;  4YG2 A;  4H4K A;  4G7O A;  2VUM C;  3CZB A;  3I4N C;  3FKI C;  2JA5 C;  1BDF A;  2YU9 C;  1V6Z A;  2L3U A;  4MEY A;  2CW0 A;  5GAG W;  4LJZ A; 
#chains in the Genus database with same CATH homology
 4P2B A;  5GAD W;  5GAH W;  3J7Z V;  3PIP S;  1ZJW A;  5BNZ A;  2RE8 A;  3DLL S;  2ZJR S;  1EXD A;  4WCE S;  1GTR A;  4U67 S;  1D6K A;  2ZJQ S;  1O0B A;  1EUY A;  4WFN S;  3AII A;  5IZN A;  4IO9 S;  4H3S A;  2ZJP S;  4WF9 S;  1GTS A;  1EUQ A;  4WFB S;  2HZ7 A;  3W2W B;  3W2V B;  5DM7 S;  5JVH S;  1B75 A;  1QRU A;  1QTQ A;  2RD2 A;  4JXX A;  1NYL A;  1FEU A;  4JYZ A;  5GAE W;  1DFU P;  1QRT A;  3CF5 S;  4IOC S;  4IOA S;  4V19 4;  5HL7 S;  1O0C A;  3X1L B;  4JXZ A;  5DM6 S;  3PIO S;  4H4K A;  1QRS A;  4UY8 8;  5JVG S;  5GAG W;  4WFA S;  1UDX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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