1Z85A

Crystal structure of a predicted rna methyltransferase (tm1380) from thermotoga maritima msb8 at 2.12 a resolution
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
221
structure length
212
Chain Sequence
PHLFYGTAQNGEVIFDEREAHHMRVVRLKEGDVIEATDGNGFSYTCILKSLKKKTAAAKIVKVEEKEKEPTEKLSVVVPIGRWERTRFLIEKCVELGVDEIFFHKFERSQHEISLDKAKIVVREAAKQCKRYLFPKVSFLEKLEFSGNVITLDLQNLLDANLEGSITVVVGPEGGFSEKERELLRSSTTIVLRFETAAILTVGYIALKKQKI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of hypothetical protein (TM1380) from Thermotoga maritima at 2.12 A resolution
rcsb
source organism Thermotoga maritima
molecule tags Transferase
molecule keywords hypothetical protein TM1380
total genus 72
structure length 212
sequence length 221
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-03-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04452 Methyltrans_RNA RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.20 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Hypothetical PUA domain-like; domain 1 1z85A01
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 1z85A02
1IPAA 4YVJA 4YQ6A 4MCCA 3BBEA 4YQ9A 1VH0A 4YQKA 1UAKA 1GZ0A 4YVIA 1Z85A 5GMBA 3O7BA 3BBHA 1VHYA 2EGVA 3IC6A 4YPZA 3NK7A 4YQJA 4YQSA 3AXZA 5D9FA 3ILKA 4YQQA 2V3JA 4YVGA 1VHKA 4L69A 5GMCA 4CNDA 3KNUA 3N4KA 4X3MA 4YQDA 3KY7A 3N4JA 4YQPA 4CNFA 1V6ZA 4YQOA 4H3ZA 4IG6A 1NS5A 4YQ2A 2CX8A 3OINA 2Z0YA 2QWVA 4E8BA 4RG1A 4YQIA 4YQ7A 4CNEA 4YQ8A 1P9PA 4YQRA 1OY5A 3QUVA 3OIJA 4YQLA 3OIIA 3E5YA 4YQ5A 1UAMA 4YQAA 3IEFA 3ONPA 4YQCA 4YQNA 1X7OA 1ZJRA 2NWAA 1V2XA 3KTYA 5GM8A 4J3CA 4JALA 4YQ3A 2V3KA 4YQ4A 4YQTA 3AI9X 4H3YA 4YPXA 3BBDA 3L8UA 1O6DA 1UALA 4X3LA 1TO0A 2O3AA 4YQ0A 2QMMA 2YY8A 1X7PA 4KDZA 4MCDA 2HA8A 3KW2A 4CNGA 4KGNA 1K3RA 4YQBA 4YVHA 4JAKA 3AIAA 3GYQA 1NXZA 5FAIA 4YQ1A 4YQGA 4YVKA 2I6DA 4XBOA 1MXIA 3DCMX 5CO4A 4FAKA 1UAJA 4PZKA 2EGWA 1J85A 3NK6A 4MCBA 4YPYA 4YPWA
chains in the Genus database with same CATH superfamily
1IPAA 4YVJA 5HL7S 1B75A 4YQ6A 2G6GA 4MCCA 1EUYA 3BBEA 1VH0A 4YQKA 4YQ9A 5JVHS 1UAKA 3CF5S 1FEUA 4JWGA 4IOCS 1GZ0A 4YVIA 1Z85A 5GMBA 1O0BA 3BBHA 3O7BA 1VHYA 5IZNA 2EGVA 1NYLA 3IC6A 4WCES 4YPZA 4U67S 3NK7A 4YQJA 4YQSA 5GAGW 3AXZA 5D9FA 3ILKA 4YQQA 2V3JA 4YVGA 1VHKA 4L69A 4JYZA 2AE0X 3AIIA 5GMCA 3W2WB 3KNUA 4CNDA 1QRUA 3N4KA 2PI8A 4X3MA 4YQDA 4WF9S 5BNZA 3KY7A 3N4JA 4YQPA 4CNFA 1V6ZA 4H3SA 4YQOA 2PJJA 4H3ZA 1GTSA 4IG6A 1NS5A 4YQ2A 2CX8A 3OINA 2Z0YA 2QWVA 5GAHW 2HZ7A 4E8BA 4RG1A 4YQIA 1ZJWA 4IO9S 3DLLS 2ZJRS 4YQ7A 4CNEA 3J7ZV 2RE8A 4YQ8A 1P9PA 2ZJQS 2GAEA 4YQRA 4WFNS 1OY5A 3W2VB 3QUVA 3OIJA 4YQLA 3OIIA 3E5YA 4YQ5A 1EUQA 4FMWA 1UAMA 4YQAA 3IEFA 3ONPA 4YQCA 4P2BA 4YQNA 1X7OA 1ZJRA 2NWAA 4JWHA 1V2XA 1UDXA 3KTYA 5GM8A 2PNWA 4J3CA 4JALA 3CZBA 4YQ3A 1O0CA 2V3KA 4YQ4A 1DFUP 4V194 4YQTA 2ZJPS 3AI9X 4H3YA 5GAEW 4YPXA 1QRSA 3BBDA 1EXDA 3L8UA 1GTRA 4JWJA 1O6DA 3PIPS 4WFAS 1QRTA 4JXXA 1UALA 4X3LA 4JXZA 1D6KA 1TO0A 2G5DA 2O3AA 4WFBS 4YQ0A 4UY88 2QMMA 2YY8A 1X7PA 4KDZA 4MCDA 2HA8A 3PIOS 3KW2A 4CNGA 4KGNA 1K3RA 4YQBA 4YVHA 4H4KA 5GADW 5DM7S 1QTQA 4JAKA 3AIAA 3GYQA 5DM6S 1NXZA 5FAIA 4IOAS 2PICA 4YQ1A 3X1LB 4YQGA 4YVKA 2I6DA 4XBOA 1MXIA 3DCMX 5CO4A 5JVGS 4FAKA 1UAJA 4PZKA 4JWFA 2EGWA 2RD2A 1J85A 3NK6A 4MCBA 4YPYA 4YPWA
chains in the Genus database with same CATH topology
1IPAA 4YVJA 4YQ6A 4MCCA 3BBEA 4YQ9A 1VH0A 4YQKA 1UAKA 4JWGA 1GZ0A 4YVIA 1Z85A 5GMBA 3O7BA 3BBHA 1VHYA 2EGVA 3IC6A 4YPZA 3NK7A 4YQJA 4YQSA 3AXZA 5D9FA 3ILKA 4YQQA 2V3JA 4YVGA 1VHKA 4L69A 5GMCA 4CNDA 3KNUA 3N4KA 4X3MA 4YQDA 3KY7A 3N4JA 4YQPA 4CNFA 1V6ZA 4YQOA 4H3ZA 4IG6A 1NS5A 4YQ2A 2CX8A 3OINA 2Z0YA 2QWVA 4E8BA 4RG1A 4YQIA 4YQ7A 4CNEA 4YQ8A 1P9PA 4YQRA 1OY5A 3QUVA 3OIJA 4YQLA 3OIIA 3E5YA 4YQ5A 4FMWA 1UAMA 4YQAA 3IEFA 3ONPA 4YQCA 4YQNA 1X7OA 1ZJRA 2NWAA 4JWHA 1V2XA 3KTYA 5GM8A 4J3CA 4JALA 4YQ3A 2V3KA 4YQ4A 4YQTA 3AI9X 4H3YA 4YPXA 3BBDA 3L8UA 4JWJA 1O6DA 1UALA 4X3LA 1TO0A 2O3AA 4YQ0A 2QMMA 2YY8A 1X7PA 4KDZA 4MCDA 2HA8A 3KW2A 4CNGA 4KGNA 1K3RA 4YQBA 4YVHA 4JAKA 3AIAA 3GYQA 1NXZA 5FAIA 4YQ1A 4YQGA 4YVKA 2I6DA 4XBOA 1MXIA 3DCMX 5CO4A 4FAKA 1UAJA 4PZKA 4JWFA 2EGWA 1J85A 3NK6A 4MCBA 4YPYA 4YPWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IPA A;  4YVJ A;  4YQ6 A;  4MCC A;  3BBE A;  4YQ9 A;  1VH0 A;  4YQK A;  1UAK A;  1GZ0 A;  4YVI A;  1Z85 A;  5GMB A;  3O7B A;  3BBH A;  1VHY A;  2EGV A;  3IC6 A;  4YPZ A;  3NK7 A;  4YQJ A;  4YQS A;  3AXZ A;  5D9F A;  3ILK A;  4YQQ A;  2V3J A;  4YVG A;  1VHK A;  4L69 A;  5GMC A;  4CND A;  3KNU A;  3N4K A;  4X3M A;  4YQD A;  3KY7 A;  3N4J A;  4YQP A;  4CNF A;  1V6Z A;  4YQO A;  4H3Z A;  4IG6 A;  1NS5 A;  4YQ2 A;  2CX8 A;  3OIN A;  2Z0Y A;  2QWV A;  4E8B A;  4RG1 A;  4YQI A;  4YQ7 A;  4CNE A;  4YQ8 A;  1P9P A;  4YQR A;  1OY5 A;  3QUV A;  3OIJ A;  4YQL A;  3OII A;  3E5Y A;  4YQ5 A;  1UAM A;  4YQA A;  3IEF A;  3ONP A;  4YQC A;  4YQN A;  1X7O A;  1ZJR A;  2NWA A;  1V2X A;  3KTY A;  5GM8 A;  4J3C A;  4JAL A;  4YQ3 A;  2V3K A;  4YQ4 A;  4YQT A;  3AI9 X;  4H3Y A;  4YPX A;  3BBD A;  3L8U A;  1O6D A;  1UAL A;  4X3L A;  1TO0 A;  2O3A A;  4YQ0 A;  2QMM A;  2YY8 A;  1X7P A;  4KDZ A;  4MCD A;  2HA8 A;  3KW2 A;  4CNG A;  4KGN A;  1K3R A;  4YQB A;  4YVH A;  4JAK A;  3AIA A;  3GYQ A;  1NXZ A;  5FAI A;  4YQ1 A;  4YQG A;  4YVK A;  2I6D A;  4XBO A;  1MXI A;  3DCM X;  5CO4 A;  4FAK A;  1UAJ A;  4PZK A;  2EGW A;  1J85 A;  3NK6 A;  4MCB A;  4YPY A;  4YPW A; 
#chains in the Genus database with same CATH topology
 1IPA A;  4YVJ A;  5HL7 S;  1B75 A;  4YQ6 A;  2G6G A;  4MCC A;  1EUY A;  3BBE A;  1VH0 A;  4YQK A;  4YQ9 A;  5JVH S;  1UAK A;  3CF5 S;  1FEU A;  4JWG A;  4IOC S;  1GZ0 A;  4YVI A;  1Z85 A;  5GMB A;  1O0B A;  3BBH A;  3O7B A;  1VHY A;  5IZN A;  2EGV A;  1NYL A;  3IC6 A;  4WCE S;  4YPZ A;  4U67 S;  3NK7 A;  4YQJ A;  4YQS A;  5GAG W;  3AXZ A;  5D9F A;  3ILK A;  4YQQ A;  2V3J A;  4YVG A;  1VHK A;  4L69 A;  4JYZ A;  2AE0 X;  3AII A;  5GMC A;  3W2W B;  3KNU A;  4CND A;  1QRU A;  3N4K A;  2PI8 A;  4X3M A;  4YQD A;  4WF9 S;  5BNZ A;  3KY7 A;  3N4J A;  4YQP A;  4CNF A;  1V6Z A;  4H3S A;  4YQO A;  2PJJ A;  4H3Z A;  1GTS A;  4IG6 A;  1NS5 A;  4YQ2 A;  2CX8 A;  3OIN A;  2Z0Y A;  2QWV A;  5GAH W;  2HZ7 A;  4E8B A;  4RG1 A;  4YQI A;  1ZJW A;  4IO9 S;  3DLL S;  2ZJR S;  4YQ7 A;  4CNE A;  3J7Z V;  2RE8 A;  4YQ8 A;  1P9P A;  2ZJQ S;  2GAE A;  4YQR A;  4WFN S;  1OY5 A;  3W2V B;  3QUV A;  3OIJ A;  4YQL A;  3OII A;  3E5Y A;  4YQ5 A;  1EUQ A;  4FMW A;  1UAM A;  4YQA A;  3IEF A;  3ONP A;  4YQC A;  4P2B A;  4YQN A;  1X7O A;  1ZJR A;  2NWA A;  4JWH A;  1V2X A;  1UDX A;  3KTY A;  5GM8 A;  2PNW A;  4J3C A;  4JAL A;  3CZB A;  4YQ3 A;  1O0C A;  2V3K A;  4YQ4 A;  1DFU P;  4V19 4;  4YQT A;  2ZJP S;  3AI9 X;  4H3Y A;  5GAE W;  4YPX A;  1QRS A;  3BBD A;  1EXD A;  3L8U A;  1GTR A;  4JWJ A;  1O6D A;  3PIP S;  4WFA S;  1QRT A;  4JXX A;  1UAL A;  4X3L A;  4JXZ A;  1D6K A;  1TO0 A;  2G5D A;  2O3A A;  4WFB S;  4YQ0 A;  4UY8 8;  2QMM A;  2YY8 A;  1X7P A;  4KDZ A;  4MCD A;  2HA8 A;  3PIO S;  3KW2 A;  4CNG A;  4KGN A;  1K3R A;  4YQB A;  4YVH A;  4H4K A;  5GAD W;  5DM7 S;  1QTQ A;  4JAK A;  3AIA A;  3GYQ A;  5DM6 S;  1NXZ A;  5FAI A;  4IOA S;  2PIC A;  4YQ1 A;  3X1L B;  4YQG A;  4YVK A;  2I6D A;  4XBO A;  1MXI A;  3DCM X;  5CO4 A;  5JVG S;  4FAK A;  1UAJ A;  4PZK A;  4JWF A;  2EGW A;  2RD2 A;  1J85 A;  3NK6 A;  4MCB A;  4YPY A;  4YPW A; 
#chains in the Genus database with same CATH homology
 1IPA A;  4YVJ A;  4YQ6 A;  4MCC A;  3BBE A;  4YQ9 A;  1VH0 A;  4YQK A;  1UAK A;  4JWG A;  1GZ0 A;  4YVI A;  1Z85 A;  5GMB A;  3O7B A;  3BBH A;  1VHY A;  2EGV A;  3IC6 A;  4YPZ A;  3NK7 A;  4YQJ A;  4YQS A;  3AXZ A;  5D9F A;  3ILK A;  4YQQ A;  2V3J A;  4YVG A;  1VHK A;  4L69 A;  5GMC A;  4CND A;  3KNU A;  3N4K A;  4X3M A;  4YQD A;  3KY7 A;  3N4J A;  4YQP A;  4CNF A;  1V6Z A;  4YQO A;  4H3Z A;  4IG6 A;  1NS5 A;  4YQ2 A;  2CX8 A;  3OIN A;  2Z0Y A;  2QWV A;  4E8B A;  4RG1 A;  4YQI A;  4YQ7 A;  4CNE A;  4YQ8 A;  1P9P A;  4YQR A;  1OY5 A;  3QUV A;  3OIJ A;  4YQL A;  3OII A;  3E5Y A;  4YQ5 A;  4FMW A;  1UAM A;  4YQA A;  3IEF A;  3ONP A;  4YQC A;  4YQN A;  1X7O A;  1ZJR A;  2NWA A;  4JWH A;  1V2X A;  3KTY A;  5GM8 A;  4J3C A;  4JAL A;  4YQ3 A;  2V3K A;  4YQ4 A;  4YQT A;  3AI9 X;  4H3Y A;  4YPX A;  3BBD A;  3L8U A;  4JWJ A;  1O6D A;  1UAL A;  4X3L A;  1TO0 A;  2O3A A;  4YQ0 A;  2QMM A;  2YY8 A;  1X7P A;  4KDZ A;  4MCD A;  2HA8 A;  3KW2 A;  4CNG A;  4KGN A;  1K3R A;  4YQB A;  4YVH A;  4JAK A;  3AIA A;  3GYQ A;  1NXZ A;  5FAI A;  4YQ1 A;  4YQG A;  4YVK A;  2I6D A;  4XBO A;  1MXI A;  3DCM X;  5CO4 A;  4FAK A;  1UAJ A;  4PZK A;  4JWF A;  2EGW A;  1J85 A;  3NK6 A;  4MCB A;  4YPY A;  4YPW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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