1Z85A

Crystal structure of a predicted rna methyltransferase (tm1380) from thermotoga maritima msb8 at 2.12 a resolution
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
221
structure length
212
Chain Sequence
b'PHLFYGTAQNGEVIFDEREAHHMRVVRLKEGDVIEATDGNGFSYTCILKSLKKKTAAAKIVKVEEKEKEPTEKLSVVVPIGRWERTRFLIEKCVELGVDEIFFHKFERSQHEISLDKAKIVVREAAKQCKRYLFPKVSFLEKLEFSGNVITLDLQNLLDANLEGSITVVVGPEGGFSEKERELLRSSTTIVLRFETAAILTVGYIALKKQKI'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords hypothetical protein TM1380
publication title Crystal structure of hypothetical protein (TM1380) from Thermotoga maritima at 2.12 A resolution
rcsb
source organism Thermotoga maritima
molecule tags Transferase
total genus 72
structure length 212
sequence length 221
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-03-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04452 Methyltrans_RNA RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.20 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Hypothetical PUA domain-like; domain 1 1z85A01
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 1z85A02
1MXIA 1GZ0A 1P9PA 4YQBA 4YQ5A 4YQKA 4MCCA 4YQPA 2Z0YA 1V6ZA 1NS5A 5CO4A 1X7OA 4YPZA 3AXZA 4YQGA 4YQRA 3L8UA 4RG1A 4X3LA 4YPYA 3ILKA 1O6DA 2O3AA 3GYQA 1Z85A 1K3RA 4CNEA 4H3ZA 2NWAA 4YQ3A 4CNGA 4YVIA 5FAIA 4KGNA 4YPXA 4KDZA 3IEFA 2V3KA 3NK7A 2EGVA 1UAKA 3OINA 1TO0A 4H3YA 4YQOA 3KTYA 2V3JA 1IPAA 1UAJA 4YVJA 4YQQA 3N4KA 3BBEA 1ZJRA 3NK6A 2QMMA 5GMBA 4J3CA 1UALA 4YQDA 4YQAA 4CNFA 4YQ6A 1V2XA 4JALA 3AIAA 3QUVA 4YQ7A 2HA8A 4YVKA 4YQIA 1NXZA 1VHYA 3E5YA 4PZKA 4YQLA 1VHKA 4YVGA 3KNUA 4XBOA 1UAMA 5GMCA 2CX8A 4IG6A 2EGWA 4YQ2A 2YY8A 1J85A 4YPWA 4X3MA 5GM8A 2I6DA 4YVHA 3IC6A 4YQCA 4YQNA 4E8BA 2QWVA 3BBDA 4L69A 4YQ0A 3AI9X 4YQTA 4YQ1A 3OIIA 4CNDA 4YQ8A 3KW2A 4MCBA 3BBHA 4FAKA 3DCMX 4JAKA 5D9FA 1OY5A 4YQSA 3OIJA 1X7PA 4YQ9A 4YQJA 3ONPA 4MCDA 3O7BA 3KY7A 3N4JA 1VH0A 4YQ4A
chains in the Genus database with same CATH superfamily
1MXIA 2PICA 1GZ0A 5HL7S 1EUQA 1P9PA 4YQBA 4YQ5A 4YQKA 4MCCA 4YQPA 2Z0YA 1V6ZA 1NS5A 5CO4A 1X7OA 4YPZA 3AXZA 4YQGA 4H4KA 4YQRA 3L8UA 4UY88 4RG1A 4X3LA 1EXDA 5BNZA 5GADW 4JYZA 4YPYA 2PI8A 4JWFA 1ZJWA 3ILKA 3DLLS 1O6DA 5JVHS 4H3SA 2O3AA 3GYQA 3PIPS 1Z85A 1K3RA 4CNEA 4WFNS 1QRSA 1FEUA 4H3ZA 2NWAA 4YQ3A 4CNGA 4YVIA 5FAIA 4KGNA 1O0CA 4YPXA 4KDZA 3AIIA 4IOAS 3IEFA 4JWHA 2V3KA 1GTSA 2EGVA 2G5DA 4V194 1UAKA 1TO0A 3NK7A 4H3YA 3OINA 4YQOA 3KTYA 2V3JA 1IPAA 1GTRA 3X1LB 2AE0X 1UAJA 4YVJA 4YQQA 3N4KA 3BBEA 1ZJRA 3NK6A 2QMMA 5GMBA 4J3CA 4JXXA 1UALA 4YQDA 4YQAA 2PNWA 4CNFA 4YQ6A 1V2XA 4JALA 3AIAA 1O0BA 4WF9S 4FMWA 1D6KA 4WFBS 3N4JA 3QUVA 4U67S 2PJJA 2HA8A 4YQ7A 5JVGS 4YVKA 4YQIA 5IZNA 1NXZA 1VHYA 3E5YA 4PZKA 1QTQA 4YQLA 1VHKA 4YVGA 3KNUA 2ZJPS 4JXZA 4IO9S 1EUYA 4XBOA 1UAMA 3W2WB 3W2VB 2CX8A 5GMCA 5GAHW 2HZ7A 1UDXA 2RD2A 2RE8A 4IG6A 2EGWA 4YQ2A 3J7ZV 4WCES 2YY8A 1J85A 4YPWA 1QRUA 4X3MA 5GM8A 1DFUP 2I6DA 4YVHA 2GAEA 3IC6A 4YQCA 4YQNA 2ZJQS 4E8BA 2QWVA 3BBDA 4L69A 5DM6S 3AI9X 4YQTA 4YQ1A 4YQ0A 3OIIA 4CNDA 2ZJRS 4YQ8A 3KW2A 5DM7S 4MCBA 3BBHA 4FAKA 4JWJA 3PIOS 3DCMX 4JAKA 2G6GA 5D9FA 4IOCS 1OY5A 1NYLA 3CF5S 4YQSA 3OIJA 4JWGA 1X7PA 4YQ9A 4WFAS 1QRTA 4YQJA 4P2BA 3ONPA 3CZBA 5GAGW 4MCDA 3O7BA 5GAEW 3KY7A 1B75A 1VH0A 4YQ4A
chains in the Genus database with same CATH topology
1MXIA 1GZ0A 1P9PA 4YQBA 4YQ5A 4YQKA 4MCCA 4YQPA 2Z0YA 1V6ZA 1NS5A 5CO4A 1X7OA 4YPZA 3AXZA 4YQGA 4YQRA 3L8UA 4RG1A 4X3LA 4YPYA 4JWFA 3ILKA 1O6DA 2O3AA 3GYQA 1Z85A 1K3RA 4CNEA 4H3ZA 2NWAA 4YQ3A 4CNGA 4YVIA 5FAIA 4KGNA 4YPXA 4KDZA 3IEFA 4JWHA 2V3KA 3NK7A 2EGVA 1UAKA 3OINA 1TO0A 4H3YA 4YQOA 3KTYA 2V3JA 1IPAA 1UAJA 4YVJA 4YQQA 3N4KA 3BBEA 1ZJRA 3NK6A 2QMMA 5GMBA 4J3CA 1UALA 4YQDA 4YQAA 4CNFA 4YQ6A 1V2XA 4JALA 3AIAA 4FMWA 3QUVA 4YQ7A 2HA8A 4YVKA 4YQIA 1NXZA 1VHYA 3E5YA 4PZKA 4YQLA 1VHKA 4YVGA 3KNUA 4XBOA 1UAMA 5GMCA 2CX8A 4IG6A 2EGWA 4YQ2A 2YY8A 1J85A 4YPWA 4X3MA 5GM8A 2I6DA 4YVHA 3IC6A 4YQCA 4YQNA 4E8BA 2QWVA 3BBDA 4L69A 4YQ0A 3AI9X 4YQTA 4YQ1A 3OIIA 4CNDA 4YQ8A 3KW2A 4MCBA 3BBHA 4FAKA 4JWJA 3DCMX 4JAKA 5D9FA 1OY5A 4YQSA 3OIJA 4JWGA 1X7PA 4YQ9A 4YQJA 3ONPA 4MCDA 3O7BA 3KY7A 3N4JA 1VH0A 4YQ4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MXI A;  1GZ0 A;  1P9P A;  4YQB A;  4YQ5 A;  4YQK A;  4MCC A;  4YQP A;  2Z0Y A;  1V6Z A;  1NS5 A;  5CO4 A;  1X7O A;  4YPZ A;  3AXZ A;  4YQG A;  4YQR A;  3L8U A;  4RG1 A;  4X3L A;  4YPY A;  3ILK A;  1O6D A;  2O3A A;  3GYQ A;  1Z85 A;  1K3R A;  4CNE A;  4H3Z A;  2NWA A;  4YQ3 A;  4CNG A;  4YVI A;  5FAI A;  4KGN A;  4YPX A;  4KDZ A;  3IEF A;  2V3K A;  3NK7 A;  2EGV A;  1UAK A;  3OIN A;  1TO0 A;  4H3Y A;  4YQO A;  3KTY A;  2V3J A;  1IPA A;  1UAJ A;  4YVJ A;  4YQQ A;  3N4K A;  3BBE A;  1ZJR A;  3NK6 A;  2QMM A;  5GMB A;  4J3C A;  1UAL A;  4YQD A;  4YQA A;  4CNF A;  4YQ6 A;  1V2X A;  4JAL A;  3AIA A;  3QUV A;  4YQ7 A;  2HA8 A;  4YVK A;  4YQI A;  1NXZ A;  1VHY A;  3E5Y A;  4PZK A;  4YQL A;  1VHK A;  4YVG A;  3KNU A;  4XBO A;  1UAM A;  5GMC A;  2CX8 A;  4IG6 A;  2EGW A;  4YQ2 A;  2YY8 A;  1J85 A;  4YPW A;  4X3M A;  5GM8 A;  2I6D A;  4YVH A;  3IC6 A;  4YQC A;  4YQN A;  4E8B A;  2QWV A;  3BBD A;  4L69 A;  4YQ0 A;  3AI9 X;  4YQT A;  4YQ1 A;  3OII A;  4CND A;  4YQ8 A;  3KW2 A;  4MCB A;  3BBH A;  4FAK A;  3DCM X;  4JAK A;  5D9F A;  1OY5 A;  4YQS A;  3OIJ A;  1X7P A;  4YQ9 A;  4YQJ A;  3ONP A;  4MCD A;  3O7B A;  3KY7 A;  3N4J A;  1VH0 A;  4YQ4 A; 
#chains in the Genus database with same CATH topology
 1MXI A;  2PIC A;  1GZ0 A;  5HL7 S;  1EUQ A;  1P9P A;  4YQB A;  4YQ5 A;  4YQK A;  4MCC A;  4YQP A;  2Z0Y A;  1V6Z A;  1NS5 A;  5CO4 A;  1X7O A;  4YPZ A;  3AXZ A;  4YQG A;  4H4K A;  4YQR A;  3L8U A;  4UY8 8;  4RG1 A;  4X3L A;  1EXD A;  5BNZ A;  5GAD W;  4JYZ A;  4YPY A;  2PI8 A;  4JWF A;  1ZJW A;  3ILK A;  3DLL S;  1O6D A;  5JVH S;  4H3S A;  2O3A A;  3GYQ A;  3PIP S;  1Z85 A;  1K3R A;  4CNE A;  4WFN S;  1QRS A;  1FEU A;  4H3Z A;  2NWA A;  4YQ3 A;  4CNG A;  4YVI A;  5FAI A;  4KGN A;  1O0C A;  4YPX A;  4KDZ A;  3AII A;  4IOA S;  3IEF A;  4JWH A;  2V3K A;  1GTS A;  2EGV A;  2G5D A;  4V19 4;  1UAK A;  1TO0 A;  3NK7 A;  4H3Y A;  3OIN A;  4YQO A;  3KTY A;  2V3J A;  1IPA A;  1GTR A;  3X1L B;  2AE0 X;  1UAJ A;  4YVJ A;  4YQQ A;  3N4K A;  3BBE A;  1ZJR A;  3NK6 A;  2QMM A;  5GMB A;  4J3C A;  4JXX A;  1UAL A;  4YQD A;  4YQA A;  2PNW A;  4CNF A;  4YQ6 A;  1V2X A;  4JAL A;  3AIA A;  1O0B A;  4WF9 S;  4FMW A;  1D6K A;  4WFB S;  3N4J A;  3QUV A;  4U67 S;  2PJJ A;  2HA8 A;  4YQ7 A;  5JVG S;  4YVK A;  4YQI A;  5IZN A;  1NXZ A;  1VHY A;  3E5Y A;  4PZK A;  1QTQ A;  4YQL A;  1VHK A;  4YVG A;  3KNU A;  2ZJP S;  4JXZ A;  4IO9 S;  1EUY A;  4XBO A;  1UAM A;  3W2W B;  3W2V B;  2CX8 A;  5GMC A;  5GAH W;  2HZ7 A;  1UDX A;  2RD2 A;  2RE8 A;  4IG6 A;  2EGW A;  4YQ2 A;  3J7Z V;  4WCE S;  2YY8 A;  1J85 A;  4YPW A;  1QRU A;  4X3M A;  5GM8 A;  1DFU P;  2I6D A;  4YVH A;  2GAE A;  3IC6 A;  4YQC A;  4YQN A;  2ZJQ S;  4E8B A;  2QWV A;  3BBD A;  4L69 A;  5DM6 S;  3AI9 X;  4YQT A;  4YQ1 A;  4YQ0 A;  3OII A;  4CND A;  2ZJR S;  4YQ8 A;  3KW2 A;  5DM7 S;  4MCB A;  3BBH A;  4FAK A;  4JWJ A;  3PIO S;  3DCM X;  4JAK A;  2G6G A;  5D9F A;  4IOC S;  1OY5 A;  1NYL A;  3CF5 S;  4YQS A;  3OIJ A;  4JWG A;  1X7P A;  4YQ9 A;  4WFA S;  1QRT A;  4YQJ A;  4P2B A;  3ONP A;  3CZB A;  5GAG W;  4MCD A;  3O7B A;  5GAE W;  3KY7 A;  1B75 A;  1VH0 A;  4YQ4 A; 
#chains in the Genus database with same CATH homology
 1MXI A;  1GZ0 A;  1P9P A;  4YQB A;  4YQ5 A;  4YQK A;  4MCC A;  4YQP A;  2Z0Y A;  1V6Z A;  1NS5 A;  5CO4 A;  1X7O A;  4YPZ A;  3AXZ A;  4YQG A;  4YQR A;  3L8U A;  4RG1 A;  4X3L A;  4YPY A;  4JWF A;  3ILK A;  1O6D A;  2O3A A;  3GYQ A;  1Z85 A;  1K3R A;  4CNE A;  4H3Z A;  2NWA A;  4YQ3 A;  4CNG A;  4YVI A;  5FAI A;  4KGN A;  4YPX A;  4KDZ A;  3IEF A;  4JWH A;  2V3K A;  3NK7 A;  2EGV A;  1UAK A;  3OIN A;  1TO0 A;  4H3Y A;  4YQO A;  3KTY A;  2V3J A;  1IPA A;  1UAJ A;  4YVJ A;  4YQQ A;  3N4K A;  3BBE A;  1ZJR A;  3NK6 A;  2QMM A;  5GMB A;  4J3C A;  1UAL A;  4YQD A;  4YQA A;  4CNF A;  4YQ6 A;  1V2X A;  4JAL A;  3AIA A;  4FMW A;  3QUV A;  4YQ7 A;  2HA8 A;  4YVK A;  4YQI A;  1NXZ A;  1VHY A;  3E5Y A;  4PZK A;  4YQL A;  1VHK A;  4YVG A;  3KNU A;  4XBO A;  1UAM A;  5GMC A;  2CX8 A;  4IG6 A;  2EGW A;  4YQ2 A;  2YY8 A;  1J85 A;  4YPW A;  4X3M A;  5GM8 A;  2I6D A;  4YVH A;  3IC6 A;  4YQC A;  4YQN A;  4E8B A;  2QWV A;  3BBD A;  4L69 A;  4YQ0 A;  3AI9 X;  4YQT A;  4YQ1 A;  3OII A;  4CND A;  4YQ8 A;  3KW2 A;  4MCB A;  3BBH A;  4FAK A;  4JWJ A;  3DCM X;  4JAK A;  5D9F A;  1OY5 A;  4YQS A;  3OIJ A;  4JWG A;  1X7P A;  4YQ9 A;  4YQJ A;  3ONP A;  4MCD A;  3O7B A;  3KY7 A;  3N4J A;  1VH0 A;  4YQ4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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