1Z85A

Crystal structure of a predicted rna methyltransferase (tm1380) from thermotoga maritima msb8 at 2.12 a resolution
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
221
structure length
212
Chain Sequence
PHLFYGTAQNGEVIFDEREAHHMRVVRLKEGDVIEATDGNGFSYTCILKSLKKKTAAAKIVKVEEKEKEPTEKLSVVVPIGRWERTRFLIEKCVELGVDEIFFHKFERSQHEISLDKAKIVVREAAKQCKRYLFPKVSFLEKLEFSGNVITLDLQNLLDANLEGSITVVVGPEGGFSEKERELLRSSTTIVLRFETAAILTVGYIALKKQKI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords hypothetical protein TM1380
publication title Crystal structure of hypothetical protein (TM1380) from Thermotoga maritima at 2.12 A resolution
rcsb
source organism Thermotoga maritima
molecule tags Transferase
total genus 72
structure length 212
sequence length 221
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-03-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04452 Methyltrans_RNA RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.20 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Hypothetical PUA domain-like; domain 1 1z85A01
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 1z85A02
3BBEA 2YY8A 3KY7A 5GMBA 4YQSA 4YQOA 1UAKA 4YQ0A 4KDZA 4MCCA 2V3JA 1VHKA 3IEFA 1GZ0A 4CNEA 3OINA 1MXIA 4YQGA 3DCMX 3NK7A 1NXZA 3E5YA 4YPXA 4J3CA 4YQ2A 1K3RA 1UAJA 1J85A 4YPZA 4CNFA 4YQCA 4H3ZA 4YQTA 1UALA 4FAKA 4XBOA 1Z85A 2NWAA 1ZJRA 4YQAA 4YQRA 4MCBA 2CX8A 2EGWA 3BBDA 1O6DA 3OIIA 2I6DA 4IG6A 3AIAA 4PZKA 1X7OA 1OY5A 4YQDA 4YVKA 1TO0A 4MCDA 5GM8A 5D9FA 4L69A 4X3LA 3KW2A 2EGVA 4RG1A 4X3MA 3AXZA 3ONPA 4YVGA 3QUVA 3KTYA 1P9PA 3L8UA 3ILKA 4YQ8A 1VH0A 4YVHA 4YQ6A 2HA8A 4YQJA 3N4JA 3OIJA 1V2XA 4YQPA 4YQNA 2O3AA 3AI9X 3BBHA 4CNGA 2Z0YA 4YQLA 4YQ9A 1VHYA 1IPAA 3NK6A 3N4KA 4YVIA 3KNUA 2V3KA 5GMCA 4JAKA 2QMMA 4JALA 1V6ZA 4E8BA 3GYQA 4YVJA 4YQ3A 3IC6A 4YPWA 4YPYA 4YQ4A 2QWVA 4H3YA 4KGNA 4YQ1A 1UAMA 1NS5A 4YQIA 1X7PA 4YQ5A 4YQBA 4YQKA 4YQ7A 3O7BA 5FAIA 5CO4A 4CNDA 4YQQA
chains in the Genus database with same CATH superfamily
3BBEA 2YY8A 3KY7A 5GMBA 2PICA 4YQSA 4YQOA 4P2BA 1UAKA 3PIOS 4YQ0A 4KDZA 4MCCA 2V3JA 2ZJQS 1EXDA 1VHKA 2ZJPS 3IEFA 5IZNA 1GZ0A 4CNEA 3OINA 1GTSA 3W2VB 5GAGW 4WFBS 4IO9S 5DM6S 1UDXA 1MXIA 4YQGA 3DCMX 3NK7A 1NXZA 3E5YA 4YPXA 1O0BA 4H3SA 4J3CA 1EUQA 1K3RA 1DFUP 4YQ2A 2G6GA 1UAJA 4JYZA 1J85A 4YPZA 4CNFA 4YQCA 4H3ZA 4YQTA 5GAHW 1UALA 4V194 4FAKA 4XBOA 4WFAS 1Z85A 2NWAA 4JXXA 1QRSA 1ZJRA 2PNWA 4YQAA 4YQRA 4JWGA 4MCBA 2CX8A 1B75A 1EUYA 2EGWA 3BBDA 1QRUA 1NYLA 4UY88 4JWHA 1O6DA 2AE0X 3OIIA 4IOCS 2I6DA 4IG6A 3AIAA 4PZKA 1X7OA 4JWFA 1OY5A 4YQDA 1ZJWA 4YVKA 1TO0A 4U67S 4MCDA 2PI8A 5GM8A 5D9FA 4L69A 5DM7S 4X3LA 4JXZA 2ZJRS 3DLLS 1QTQA 3KW2A 1D6KA 2EGVA 4H4KA 4RG1A 4X3MA 3AXZA 3ONPA 4YVGA 3QUVA 3KTYA 1P9PA 3CF5S 3L8UA 3ILKA 4YQ8A 2PJJA 2RE8A 1VH0A 2GAEA 4YVHA 3CZBA 4YQ6A 2HA8A 4YQJA 4WFNS 3N4JA 3OIJA 1FEUA 1V2XA 1QRTA 3PIPS 4YQPA 3J7ZV 2G5DA 4YQNA 2O3AA 3AI9X 3BBHA 4CNGA 5JVHS 2Z0YA 4YQLA 4YQ9A 2RD2A 1VHYA 1IPAA 3NK6A 3N4KA 4YVIA 2V3KA 3KNUA 5GMCA 5GADW 4IOAS 4JAKA 2QMMA 4JALA 1V6ZA 4E8BA 5GAEW 3AIIA 3GYQA 4JWJA 4YVJA 4YQ3A 5HL7S 1O0CA 1GTRA 3IC6A 4FMWA 3W2WB 4YPWA 4YPYA 5JVGS 4YQ4A 5BNZA 2HZ7A 2QWVA 4H3YA 4KGNA 4WCES 4YQ1A 3X1LB 1UAMA 1NS5A 4YQIA 1X7PA 4YQ5A 4YQBA 4YQKA 4YQ7A 3O7BA 5FAIA 5CO4A 4WF9S 4CNDA 4YQQA
chains in the Genus database with same CATH topology
3BBEA 2YY8A 3KY7A 5GMBA 4YQSA 4YQOA 1UAKA 4YQ0A 4KDZA 4MCCA 2V3JA 1VHKA 3IEFA 1GZ0A 4CNEA 3OINA 1MXIA 4YQGA 3DCMX 3NK7A 1NXZA 3E5YA 4YPXA 4J3CA 4YQ2A 1K3RA 1UAJA 1J85A 4YPZA 4CNFA 4YQCA 4H3ZA 4YQTA 1UALA 4FAKA 4XBOA 1Z85A 2NWAA 1ZJRA 4YQAA 4YQRA 4JWGA 4MCBA 2CX8A 2EGWA 3BBDA 4JWHA 1O6DA 3OIIA 2I6DA 4IG6A 3AIAA 4PZKA 1X7OA 4JWFA 1OY5A 4YQDA 4YVKA 1TO0A 4MCDA 5GM8A 5D9FA 4L69A 4X3LA 3KW2A 2EGVA 4RG1A 4X3MA 3AXZA 3ONPA 4YVGA 3QUVA 3KTYA 1P9PA 3L8UA 3ILKA 4YQ8A 1VH0A 4YVHA 4YQ6A 2HA8A 4YQJA 3N4JA 3OIJA 1V2XA 4YQPA 4YQNA 2O3AA 3AI9X 3BBHA 4CNGA 2Z0YA 4YQLA 4YQ9A 1VHYA 1IPAA 3NK6A 3N4KA 4YVIA 3KNUA 2V3KA 5GMCA 4JAKA 2QMMA 4JALA 1V6ZA 4E8BA 3GYQA 4YVJA 4JWJA 4YQ3A 3IC6A 4FMWA 4YPWA 4YPYA 4YQ4A 2QWVA 4H3YA 4KGNA 4YQ1A 1UAMA 1NS5A 4YQIA 1X7PA 4YQ5A 4YQBA 4YQKA 4YQ7A 3O7BA 5FAIA 5CO4A 4CNDA 4YQQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BBE A;  2YY8 A;  3KY7 A;  5GMB A;  4YQS A;  4YQO A;  1UAK A;  4YQ0 A;  4KDZ A;  4MCC A;  2V3J A;  1VHK A;  3IEF A;  1GZ0 A;  4CNE A;  3OIN A;  1MXI A;  4YQG A;  3DCM X;  3NK7 A;  1NXZ A;  3E5Y A;  4YPX A;  4J3C A;  4YQ2 A;  1K3R A;  1UAJ A;  1J85 A;  4YPZ A;  4CNF A;  4YQC A;  4H3Z A;  4YQT A;  1UAL A;  4FAK A;  4XBO A;  1Z85 A;  2NWA A;  1ZJR A;  4YQA A;  4YQR A;  4MCB A;  2CX8 A;  2EGW A;  3BBD A;  1O6D A;  3OII A;  2I6D A;  4IG6 A;  3AIA A;  4PZK A;  1X7O A;  1OY5 A;  4YQD A;  4YVK A;  1TO0 A;  4MCD A;  5GM8 A;  5D9F A;  4L69 A;  4X3L A;  3KW2 A;  2EGV A;  4RG1 A;  4X3M A;  3AXZ A;  3ONP A;  4YVG A;  3QUV A;  3KTY A;  1P9P A;  3L8U A;  3ILK A;  4YQ8 A;  1VH0 A;  4YVH A;  4YQ6 A;  2HA8 A;  4YQJ A;  3N4J A;  3OIJ A;  1V2X A;  4YQP A;  4YQN A;  2O3A A;  3AI9 X;  3BBH A;  4CNG A;  2Z0Y A;  4YQL A;  4YQ9 A;  1VHY A;  1IPA A;  3NK6 A;  3N4K A;  4YVI A;  3KNU A;  2V3K A;  5GMC A;  4JAK A;  2QMM A;  4JAL A;  1V6Z A;  4E8B A;  3GYQ A;  4YVJ A;  4YQ3 A;  3IC6 A;  4YPW A;  4YPY A;  4YQ4 A;  2QWV A;  4H3Y A;  4KGN A;  4YQ1 A;  1UAM A;  1NS5 A;  4YQI A;  1X7P A;  4YQ5 A;  4YQB A;  4YQK A;  4YQ7 A;  3O7B A;  5FAI A;  5CO4 A;  4CND A;  4YQQ A; 
#chains in the Genus database with same CATH topology
 3BBE A;  2YY8 A;  3KY7 A;  5GMB A;  2PIC A;  4YQS A;  4YQO A;  4P2B A;  1UAK A;  3PIO S;  4YQ0 A;  4KDZ A;  4MCC A;  2V3J A;  2ZJQ S;  1EXD A;  1VHK A;  2ZJP S;  3IEF A;  5IZN A;  1GZ0 A;  4CNE A;  3OIN A;  1GTS A;  3W2V B;  5GAG W;  4WFB S;  4IO9 S;  5DM6 S;  1UDX A;  1MXI A;  4YQG A;  3DCM X;  3NK7 A;  1NXZ A;  3E5Y A;  4YPX A;  1O0B A;  4H3S A;  4J3C A;  1EUQ A;  1K3R A;  1DFU P;  4YQ2 A;  2G6G A;  1UAJ A;  4JYZ A;  1J85 A;  4YPZ A;  4CNF A;  4YQC A;  4H3Z A;  4YQT A;  5GAH W;  1UAL A;  4V19 4;  4FAK A;  4XBO A;  4WFA S;  1Z85 A;  2NWA A;  4JXX A;  1QRS A;  1ZJR A;  2PNW A;  4YQA A;  4YQR A;  4JWG A;  4MCB A;  2CX8 A;  1B75 A;  1EUY A;  2EGW A;  3BBD A;  1QRU A;  1NYL A;  4UY8 8;  4JWH A;  1O6D A;  2AE0 X;  3OII A;  4IOC S;  2I6D A;  4IG6 A;  3AIA A;  4PZK A;  1X7O A;  4JWF A;  1OY5 A;  4YQD A;  1ZJW A;  4YVK A;  1TO0 A;  4U67 S;  4MCD A;  2PI8 A;  5GM8 A;  5D9F A;  4L69 A;  5DM7 S;  4X3L A;  4JXZ A;  2ZJR S;  3DLL S;  1QTQ A;  3KW2 A;  1D6K A;  2EGV A;  4H4K A;  4RG1 A;  4X3M A;  3AXZ A;  3ONP A;  4YVG A;  3QUV A;  3KTY A;  1P9P A;  3CF5 S;  3L8U A;  3ILK A;  4YQ8 A;  2PJJ A;  2RE8 A;  1VH0 A;  2GAE A;  4YVH A;  3CZB A;  4YQ6 A;  2HA8 A;  4YQJ A;  4WFN S;  3N4J A;  3OIJ A;  1FEU A;  1V2X A;  1QRT A;  3PIP S;  4YQP A;  3J7Z V;  2G5D A;  4YQN A;  2O3A A;  3AI9 X;  3BBH A;  4CNG A;  5JVH S;  2Z0Y A;  4YQL A;  4YQ9 A;  2RD2 A;  1VHY A;  1IPA A;  3NK6 A;  3N4K A;  4YVI A;  2V3K A;  3KNU A;  5GMC A;  5GAD W;  4IOA S;  4JAK A;  2QMM A;  4JAL A;  1V6Z A;  4E8B A;  5GAE W;  3AII A;  3GYQ A;  4JWJ A;  4YVJ A;  4YQ3 A;  5HL7 S;  1O0C A;  1GTR A;  3IC6 A;  4FMW A;  3W2W B;  4YPW A;  4YPY A;  5JVG S;  4YQ4 A;  5BNZ A;  2HZ7 A;  2QWV A;  4H3Y A;  4KGN A;  4WCE S;  4YQ1 A;  3X1L B;  1UAM A;  1NS5 A;  4YQI A;  1X7P A;  4YQ5 A;  4YQB A;  4YQK A;  4YQ7 A;  3O7B A;  5FAI A;  5CO4 A;  4WF9 S;  4CND A;  4YQQ A; 
#chains in the Genus database with same CATH homology
 3BBE A;  2YY8 A;  3KY7 A;  5GMB A;  4YQS A;  4YQO A;  1UAK A;  4YQ0 A;  4KDZ A;  4MCC A;  2V3J A;  1VHK A;  3IEF A;  1GZ0 A;  4CNE A;  3OIN A;  1MXI A;  4YQG A;  3DCM X;  3NK7 A;  1NXZ A;  3E5Y A;  4YPX A;  4J3C A;  4YQ2 A;  1K3R A;  1UAJ A;  1J85 A;  4YPZ A;  4CNF A;  4YQC A;  4H3Z A;  4YQT A;  1UAL A;  4FAK A;  4XBO A;  1Z85 A;  2NWA A;  1ZJR A;  4YQA A;  4YQR A;  4JWG A;  4MCB A;  2CX8 A;  2EGW A;  3BBD A;  4JWH A;  1O6D A;  3OII A;  2I6D A;  4IG6 A;  3AIA A;  4PZK A;  1X7O A;  4JWF A;  1OY5 A;  4YQD A;  4YVK A;  1TO0 A;  4MCD A;  5GM8 A;  5D9F A;  4L69 A;  4X3L A;  3KW2 A;  2EGV A;  4RG1 A;  4X3M A;  3AXZ A;  3ONP A;  4YVG A;  3QUV A;  3KTY A;  1P9P A;  3L8U A;  3ILK A;  4YQ8 A;  1VH0 A;  4YVH A;  4YQ6 A;  2HA8 A;  4YQJ A;  3N4J A;  3OIJ A;  1V2X A;  4YQP A;  4YQN A;  2O3A A;  3AI9 X;  3BBH A;  4CNG A;  2Z0Y A;  4YQL A;  4YQ9 A;  1VHY A;  1IPA A;  3NK6 A;  3N4K A;  4YVI A;  3KNU A;  2V3K A;  5GMC A;  4JAK A;  2QMM A;  4JAL A;  1V6Z A;  4E8B A;  3GYQ A;  4YVJ A;  4JWJ A;  4YQ3 A;  3IC6 A;  4FMW A;  4YPW A;  4YPY A;  4YQ4 A;  2QWV A;  4H3Y A;  4KGN A;  4YQ1 A;  1UAM A;  1NS5 A;  4YQI A;  1X7P A;  4YQ5 A;  4YQB A;  4YQK A;  4YQ7 A;  3O7B A;  5FAI A;  5CO4 A;  4CND A;  4YQQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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