1Z85A

Crystal structure of a predicted rna methyltransferase (tm1380) from thermotoga maritima msb8 at 2.12 a resolution
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
221
structure length
212
Chain Sequence
PHLFYGTAQNGEVIFDEREAHHMRVVRLKEGDVIEATDGNGFSYTCILKSLKKKTAAAKIVKVEEKEKEPTEKLSVVVPIGRWERTRFLIEKCVELGVDEIFFHKFERSQHEISLDKAKIVVREAAKQCKRYLFPKVSFLEKLEFSGNVITLDLQNLLDANLEGSITVVVGPEGGFSEKERELLRSSTTIVLRFETAAILTVGYIALKKQKI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords hypothetical protein TM1380
publication title Crystal structure of hypothetical protein (TM1380) from Thermotoga maritima at 2.12 A resolution
rcsb
source organism Thermotoga maritima
total genus 72
structure length 212
sequence length 221
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-03-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04452 Methyltrans_RNA RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.20 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Hypothetical PUA domain-like; domain 1 1z85A01
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 1z85A02
4YVKA 1Z85A 3AXZA 3N4JA 3QUVA 4YVJA 3BBHA 1GZ0A 4KDZA 1VH0A 2CX8A 4YQTA 4MCBA 2NWAA 1J85A 2EGWA 4YPYA 5FAIA 4YVGA 4YQ1A 4YVIA 3E5YA 1V6ZA 4PZKA 1X7OA 4YQ2A 4YQ6A 5GMCA 4IG6A 3N4KA 3DCMX 3OIIA 4CNEA 2QWVA 4H3YA 3AI9X 1P9PA 3OINA 4YQLA 3ONPA 5GM8A 4CNDA 3IC6A 3OIJA 1VHYA 4YQ3A 4JAKA 3KNUA 5CO4A 4YQJA 4X3MA 5D9FA 1NS5A 4XBOA 4YVHA 4YQIA 4JALA 2YY8A 1UAMA 4CNFA 4J3CA 4L69A 1UAKA 4H3ZA 4YQ4A 4YPZA 1ZJRA 4YQDA 1K3RA 1X7PA 3GYQA 2QMMA 4YQKA 1O6DA 4YQGA 4YQCA 1TO0A 1UALA 4YQBA 1UAJA 4MCDA 1IPAA 4E8BA 2EGVA 4YQPA 4YQOA 3IEFA 4YQSA 2V3KA 3BBEA 5GMBA 1VHKA 4YQRA 4YQQA 4FAKA 4MCCA 3O7BA 2I6DA 4RG1A 2HA8A 2O3AA 1MXIA 3NK6A 3KY7A 4YPWA 4YQ7A 4YQ0A 4X3LA 4YQAA 2Z0YA 4YQ5A 3KW2A 3BBDA 3ILKA 3NK7A 4YPXA 3AIAA 4YQNA 1OY5A 1NXZA 4KGNA 2V3JA 3KTYA 4YQ8A 1V2XA 3L8UA 4CNGA 4YQ9A
chains in the Genus database with same CATH superfamily
4YVKA 1Z85A 3AXZA 3N4JA 3QUVA 4YVJA 3BBHA 1GZ0A 3W2WB 4KDZA 1VH0A 2CX8A 4YQTA 4MCBA 2NWAA 1GTRA 1FEUA 1J85A 4JWFA 5JVGS 2EGWA 1QRUA 4YPYA 5FAIA 4YVGA 2AE0X 3W2VB 4YQ1A 5GADW 3E5YA 4YVIA 1V6ZA 4PZKA 1X7OA 4YQ2A 4YQ6A 2PICA 1EXDA 5GMCA 4IG6A 3N4KA 2PI8A 4IOCS 3DCMX 3OIIA 4CNEA 2QWVA 3AI9X 4H3YA 4WFBS 1P9PA 3OINA 4YQLA 3ONPA 5IZNA 5GM8A 4CNDA 4WF9S 3IC6A 3X1LB 3OIJA 3DLLS 1VHYA 4YQ3A 4JAKA 3KNUA 5CO4A 1B75A 4YQJA 3PIOS 4X3MA 5JVHS 5D9FA 5HL7S 1NS5A 5BNZA 4XBOA 4YVHA 1ZJWA 2HZ7A 4YQIA 2G5DA 4WFAS 5DM7S 4JALA 2YY8A 5GAGW 2G6GA 4WCES 1QRTA 1UAMA 3PIPS 4CNFA 2RE8A 4J3CA 4L69A 1UAKA 4H3ZA 4YQ4A 4H3SA 5GAEW 3CF5S 4YPZA 1EUQA 1ZJRA 4JWGA 4YQDA 1K3RA 1X7PA 4JWJA 3GYQA 3CZBA 4U67S 4JYZA 2QMMA 4YQKA 1O6DA 3J7ZV 4IOAS 4YQGA 4YQCA 1O0CA 1GTSA 1TO0A 1UALA 4YQBA 1UAJA 2PJJA 4MCDA 1IPAA 4E8BA 4FMWA 2EGVA 4YQPA 2GAEA 4YQOA 3IEFA 4YQSA 2V3KA 3BBEA 5GMBA 1VHKA 1NYLA 5DM6S 4YQRA 4UY88 4YQQA 4FAKA 4MCCA 3O7BA 2I6DA 4WFNS 4JXZA 1O0BA 4JXXA 4RG1A 2HA8A 1D6KA 1MXIA 2O3AA 3NK6A 1EUYA 3KY7A 2ZJRS 4JWHA 1UDXA 4YPWA 4YQ7A 4IO9S 4X3LA 4YQAA 4YQ0A 4H4KA 1QTQA 2RD2A 2Z0YA 5GAHW 4YQ5A 1DFUP 3KW2A 3BBDA 3ILKA 3NK7A 4P2BA 3AIAA 4YPXA 4YQNA 1OY5A 1NXZA 2PNWA 2ZJQS 4KGNA 2V3JA 3KTYA 4YQ8A 2ZJPS 1V2XA 3L8UA 4CNGA 3AIIA 4V194 4YQ9A 1QRSA
chains in the Genus database with same CATH topology
4YVKA 1Z85A 3AXZA 3N4JA 3QUVA 4YVJA 3BBHA 1GZ0A 4KDZA 1VH0A 2CX8A 4YQTA 4MCBA 2NWAA 1J85A 4JWFA 2EGWA 4YPYA 5FAIA 4YVGA 4YQ1A 4YVIA 3E5YA 1V6ZA 4PZKA 1X7OA 4YQ2A 4YQ6A 5GMCA 4IG6A 3N4KA 3DCMX 3OIIA 4CNEA 2QWVA 4H3YA 3AI9X 1P9PA 3OINA 4YQLA 3ONPA 5GM8A 4CNDA 3IC6A 3OIJA 1VHYA 4YQ3A 4JAKA 3KNUA 5CO4A 4YQJA 4X3MA 5D9FA 1NS5A 4XBOA 4YVHA 4YQIA 4JALA 2YY8A 1UAMA 4CNFA 4J3CA 4L69A 1UAKA 4H3ZA 4YQ4A 4YPZA 1ZJRA 4JWGA 4YQDA 1K3RA 1X7PA 4JWJA 3GYQA 2QMMA 4YQKA 1O6DA 4YQGA 4YQCA 1TO0A 1UALA 4YQBA 1UAJA 4MCDA 1IPAA 4E8BA 4FMWA 2EGVA 4YQPA 4YQOA 3IEFA 4YQSA 2V3KA 3BBEA 5GMBA 1VHKA 4YQRA 4YQQA 4FAKA 4MCCA 3O7BA 2I6DA 4RG1A 2HA8A 2O3AA 1MXIA 3NK6A 3KY7A 4JWHA 4YPWA 4YQ7A 4YQ0A 4X3LA 4YQAA 2Z0YA 4YQ5A 3KW2A 3BBDA 3ILKA 3NK7A 4YPXA 3AIAA 4YQNA 1OY5A 1NXZA 4KGNA 2V3JA 3KTYA 4YQ8A 1V2XA 3L8UA 4CNGA 4YQ9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YVK A;  1Z85 A;  3AXZ A;  3N4J A;  3QUV A;  4YVJ A;  3BBH A;  1GZ0 A;  4KDZ A;  1VH0 A;  2CX8 A;  4YQT A;  4MCB A;  2NWA A;  1J85 A;  2EGW A;  4YPY A;  5FAI A;  4YVG A;  4YQ1 A;  4YVI A;  3E5Y A;  1V6Z A;  4PZK A;  1X7O A;  4YQ2 A;  4YQ6 A;  5GMC A;  4IG6 A;  3N4K A;  3DCM X;  3OII A;  4CNE A;  2QWV A;  4H3Y A;  3AI9 X;  1P9P A;  3OIN A;  4YQL A;  3ONP A;  5GM8 A;  4CND A;  3IC6 A;  3OIJ A;  1VHY A;  4YQ3 A;  4JAK A;  3KNU A;  5CO4 A;  4YQJ A;  4X3M A;  5D9F A;  1NS5 A;  4XBO A;  4YVH A;  4YQI A;  4JAL A;  2YY8 A;  1UAM A;  4CNF A;  4J3C A;  4L69 A;  1UAK A;  4H3Z A;  4YQ4 A;  4YPZ A;  1ZJR A;  4YQD A;  1K3R A;  1X7P A;  3GYQ A;  2QMM A;  4YQK A;  1O6D A;  4YQG A;  4YQC A;  1TO0 A;  1UAL A;  4YQB A;  1UAJ A;  4MCD A;  1IPA A;  4E8B A;  2EGV A;  4YQP A;  4YQO A;  3IEF A;  4YQS A;  2V3K A;  3BBE A;  5GMB A;  1VHK A;  4YQR A;  4YQQ A;  4FAK A;  4MCC A;  3O7B A;  2I6D A;  4RG1 A;  2HA8 A;  2O3A A;  1MXI A;  3NK6 A;  3KY7 A;  4YPW A;  4YQ7 A;  4YQ0 A;  4X3L A;  4YQA A;  2Z0Y A;  4YQ5 A;  3KW2 A;  3BBD A;  3ILK A;  3NK7 A;  4YPX A;  3AIA A;  4YQN A;  1OY5 A;  1NXZ A;  4KGN A;  2V3J A;  3KTY A;  4YQ8 A;  1V2X A;  3L8U A;  4CNG A;  4YQ9 A; 
#chains in the Genus database with same CATH topology
 4YVK A;  1Z85 A;  3AXZ A;  3N4J A;  3QUV A;  4YVJ A;  3BBH A;  1GZ0 A;  3W2W B;  4KDZ A;  1VH0 A;  2CX8 A;  4YQT A;  4MCB A;  2NWA A;  1GTR A;  1FEU A;  1J85 A;  4JWF A;  5JVG S;  2EGW A;  1QRU A;  4YPY A;  5FAI A;  4YVG A;  2AE0 X;  3W2V B;  4YQ1 A;  5GAD W;  3E5Y A;  4YVI A;  1V6Z A;  4PZK A;  1X7O A;  4YQ2 A;  4YQ6 A;  2PIC A;  1EXD A;  5GMC A;  4IG6 A;  3N4K A;  2PI8 A;  4IOC S;  3DCM X;  3OII A;  4CNE A;  2QWV A;  3AI9 X;  4H3Y A;  4WFB S;  1P9P A;  3OIN A;  4YQL A;  3ONP A;  5IZN A;  5GM8 A;  4CND A;  4WF9 S;  3IC6 A;  3X1L B;  3OIJ A;  3DLL S;  1VHY A;  4YQ3 A;  4JAK A;  3KNU A;  5CO4 A;  1B75 A;  4YQJ A;  3PIO S;  4X3M A;  5JVH S;  5D9F A;  5HL7 S;  1NS5 A;  5BNZ A;  4XBO A;  4YVH A;  1ZJW A;  2HZ7 A;  4YQI A;  2G5D A;  4WFA S;  5DM7 S;  4JAL A;  2YY8 A;  5GAG W;  2G6G A;  4WCE S;  1QRT A;  1UAM A;  3PIP S;  4CNF A;  2RE8 A;  4J3C A;  4L69 A;  1UAK A;  4H3Z A;  4YQ4 A;  4H3S A;  5GAE W;  3CF5 S;  4YPZ A;  1EUQ A;  1ZJR A;  4JWG A;  4YQD A;  1K3R A;  1X7P A;  4JWJ A;  3GYQ A;  3CZB A;  4U67 S;  4JYZ A;  2QMM A;  4YQK A;  1O6D A;  3J7Z V;  4IOA S;  4YQG A;  4YQC A;  1O0C A;  1GTS A;  1TO0 A;  1UAL A;  4YQB A;  1UAJ A;  2PJJ A;  4MCD A;  1IPA A;  4E8B A;  4FMW A;  2EGV A;  4YQP A;  2GAE A;  4YQO A;  3IEF A;  4YQS A;  2V3K A;  3BBE A;  5GMB A;  1VHK A;  1NYL A;  5DM6 S;  4YQR A;  4UY8 8;  4YQQ A;  4FAK A;  4MCC A;  3O7B A;  2I6D A;  4WFN S;  4JXZ A;  1O0B A;  4JXX A;  4RG1 A;  2HA8 A;  1D6K A;  1MXI A;  2O3A A;  3NK6 A;  1EUY A;  3KY7 A;  2ZJR S;  4JWH A;  1UDX A;  4YPW A;  4YQ7 A;  4IO9 S;  4X3L A;  4YQA A;  4YQ0 A;  4H4K A;  1QTQ A;  2RD2 A;  2Z0Y A;  5GAH W;  4YQ5 A;  1DFU P;  3KW2 A;  3BBD A;  3ILK A;  3NK7 A;  4P2B A;  3AIA A;  4YPX A;  4YQN A;  1OY5 A;  1NXZ A;  2PNW A;  2ZJQ S;  4KGN A;  2V3J A;  3KTY A;  4YQ8 A;  2ZJP S;  1V2X A;  3L8U A;  4CNG A;  3AII A;  4V19 4;  4YQ9 A;  1QRS A; 
#chains in the Genus database with same CATH homology
 4YVK A;  1Z85 A;  3AXZ A;  3N4J A;  3QUV A;  4YVJ A;  3BBH A;  1GZ0 A;  4KDZ A;  1VH0 A;  2CX8 A;  4YQT A;  4MCB A;  2NWA A;  1J85 A;  4JWF A;  2EGW A;  4YPY A;  5FAI A;  4YVG A;  4YQ1 A;  4YVI A;  3E5Y A;  1V6Z A;  4PZK A;  1X7O A;  4YQ2 A;  4YQ6 A;  5GMC A;  4IG6 A;  3N4K A;  3DCM X;  3OII A;  4CNE A;  2QWV A;  4H3Y A;  3AI9 X;  1P9P A;  3OIN A;  4YQL A;  3ONP A;  5GM8 A;  4CND A;  3IC6 A;  3OIJ A;  1VHY A;  4YQ3 A;  4JAK A;  3KNU A;  5CO4 A;  4YQJ A;  4X3M A;  5D9F A;  1NS5 A;  4XBO A;  4YVH A;  4YQI A;  4JAL A;  2YY8 A;  1UAM A;  4CNF A;  4J3C A;  4L69 A;  1UAK A;  4H3Z A;  4YQ4 A;  4YPZ A;  1ZJR A;  4JWG A;  4YQD A;  1K3R A;  1X7P A;  4JWJ A;  3GYQ A;  2QMM A;  4YQK A;  1O6D A;  4YQG A;  4YQC A;  1TO0 A;  1UAL A;  4YQB A;  1UAJ A;  4MCD A;  1IPA A;  4E8B A;  4FMW A;  2EGV A;  4YQP A;  4YQO A;  3IEF A;  4YQS A;  2V3K A;  3BBE A;  5GMB A;  1VHK A;  4YQR A;  4YQQ A;  4FAK A;  4MCC A;  3O7B A;  2I6D A;  4RG1 A;  2HA8 A;  2O3A A;  1MXI A;  3NK6 A;  3KY7 A;  4JWH A;  4YPW A;  4YQ7 A;  4YQ0 A;  4X3L A;  4YQA A;  2Z0Y A;  4YQ5 A;  3KW2 A;  3BBD A;  3ILK A;  3NK7 A;  4YPX A;  3AIA A;  4YQN A;  1OY5 A;  1NXZ A;  4KGN A;  2V3J A;  3KTY A;  4YQ8 A;  1V2X A;  3L8U A;  4CNG A;  4YQ9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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