1Z85A

Crystal structure of a predicted rna methyltransferase (tm1380) from thermotoga maritima msb8 at 2.12 a resolution
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
221
structure length
212
Chain Sequence
PHLFYGTAQNGEVIFDEREAHHMRVVRLKEGDVIEATDGNGFSYTCILKSLKKKTAAAKIVKVEEKEKEPTEKLSVVVPIGRWERTRFLIEKCVELGVDEIFFHKFERSQHEISLDKAKIVVREAAKQCKRYLFPKVSFLEKLEFSGNVITLDLQNLLDANLEGSITVVVGPEGGFSEKERELLRSSTTIVLRFETAAILTVGYIALKKQKI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of hypothetical protein (TM1380) from Thermotoga maritima at 2.12 A resolution
rcsb
source organism Thermotoga maritima
molecule tags Transferase
molecule keywords hypothetical protein TM1380
total genus 72
structure length 212
sequence length 221
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-03-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04452 Methyltrans_RNA RNA methyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.20 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Hypothetical PUA domain-like; domain 1 1z85A01
3.40.1280.10 Alpha Beta 3-Layer(aba) Sandwich Alpha/beta knot Alpha/beta knot 1z85A02
2V3KA 2NWAA 3KTYA 4YQ2A 1UAKA 1VHYA 4YVGA 4YQNA 5D9FA 3ILKA 3OIJA 4YQ6A 3N4JA 4YQ5A 4KGNA 4YQ8A 3KW2A 4YVKA 3NK6A 4YQCA 1VHKA 4YQ7A 4MCDA 4X3MA 4CNGA 4YQ4A 3O7BA 4IG6A 4YQJA 4CNFA 4YQ0A 1V6ZA 3DCMX 1VH0A 1TO0A 5CO4A 4YVJA 2Z0YA 5GM8A 2I6DA 1O6DA 4YPXA 1GZ0A 4YVHA 4YQKA 1UAJA 3E5YA 1V2XA 4YQBA 4YQ9A 3OIIA 5GMBA 3L8UA 3NK7A 4YPYA 4YQ3A 4YQIA 1X7OA 2O3AA 4KDZA 4PZKA 4YQOA 4JAKA 3AXZA 1UALA 4YQAA 3QUVA 3KNUA 4YPZA 4MCBA 1K3RA 4J3CA 1J85A 2HA8A 3AI9X 3IEFA 1IPAA 4H3ZA 3IC6A 3ONPA 4JALA 3BBEA 3GYQA 1UAMA 2V3JA 5FAIA 1Z85A 1MXIA 2YY8A 4H3YA 4YQLA 2EGWA 4CNDA 4YVIA 3BBDA 4RG1A 1P9PA 1X7PA 3KY7A 4YQDA 3OINA 4YPWA 2EGVA 1OY5A 4YQTA 4YQGA 4YQSA 4CNEA 4XBOA 2CX8A 1ZJRA 2QMMA 3N4KA 3AIAA 1NXZA 4YQRA 4YQPA 2QWVA 4YQ1A 4FAKA 4L69A 4MCCA 4YQQA 5GMCA 4X3LA 4E8BA 1NS5A 3BBHA
chains in the Genus database with same CATH superfamily
2GAEA 1QRTA 2V3KA 2NWAA 5GAGW 1B75A 3KTYA 4YQ2A 4H4KA 1VHYA 1UAKA 4YVGA 4YQNA 5D9FA 5GADW 3ILKA 3OIJA 4IO9S 4WCES 4YQ6A 4JWHA 1EUYA 3N4JA 3CF5S 4WF9S 4YQ5A 2PJJA 4KGNA 4WFNS 1QRSA 5JVGS 2RD2A 4YQ8A 3KW2A 1O0BA 4YVKA 2PNWA 3NK6A 4YQCA 2AE0X 1EUQA 1QTQA 1VHKA 4JYZA 4YQ7A 5JVHS 4MCDA 4X3MA 4CNGA 4YQ4A 3O7BA 4IG6A 4YQJA 5IZNA 4CNFA 4YQ0A 1V6ZA 3DCMX 1VH0A 4P2BA 5HL7S 1TO0A 1QRUA 2G5DA 2RE8A 5CO4A 4YVJA 4H3SA 2Z0YA 5GM8A 2I6DA 5GAEW 5GAHW 4IOAS 1O6DA 2ZJRS 3J7ZV 4YPXA 4JXXA 1GZ0A 4YVHA 4YQKA 2PI8A 1UAJA 3E5YA 1V2XA 4YQBA 4YQ9A 3DLLS 4JWJA 3PIOS 2ZJQS 3OIIA 5GMBA 3CZBA 3L8UA 1D6KA 5BNZA 3NK7A 5DM7S 4YPYA 4UY88 4YQ3A 4YQIA 1X7OA 4JXZA 4JWFA 2O3AA 1GTRA 4KDZA 1NYLA 4PZKA 4WFAS 4YQOA 4JAKA 3AXZA 1UALA 4FMWA 4YQAA 3QUVA 3KNUA 4IOCS 4YPZA 4JWGA 4MCBA 1K3RA 1ZJWA 4J3CA 1J85A 2HA8A 3AI9X 3IEFA 1IPAA 4H3ZA 3IC6A 3ONPA 4JALA 3AIIA 3BBEA 1EXDA 3GYQA 1UAMA 2V3JA 2ZJPS 5FAIA 1Z85A 2HZ7A 1MXIA 2YY8A 4H3YA 4YQLA 2EGWA 4CNDA 4YVIA 3BBDA 4RG1A 1UDXA 1P9PA 1X7PA 3KY7A 4YQDA 3OINA 3X1LB 4YPWA 2EGVA 1OY5A 4YQTA 4YQGA 4YQSA 4CNEA 4XBOA 5DM6S 2CX8A 1ZJRA 2QMMA 3N4KA 4V194 2PICA 3AIAA 1NXZA 4YQRA 3W2WB 1O0CA 4YQPA 4U67S 2QWVA 1GTSA 4YQ1A 4FAKA 4L69A 3W2VB 2G6GA 4MCCA 4YQQA 5GMCA 4WFBS 4X3LA 4E8BA 1NS5A 3PIPS 1FEUA 1DFUP 3BBHA
chains in the Genus database with same CATH topology
2V3KA 2NWAA 3KTYA 4YQ2A 1UAKA 1VHYA 4YVGA 4YQNA 5D9FA 3ILKA 3OIJA 4YQ6A 4JWHA 3N4JA 4YQ5A 4KGNA 4YQ8A 3KW2A 4YVKA 3NK6A 4YQCA 1VHKA 4YQ7A 4MCDA 4X3MA 4CNGA 4YQ4A 3O7BA 4IG6A 4YQJA 4CNFA 4YQ0A 1V6ZA 3DCMX 1VH0A 1TO0A 5CO4A 4YVJA 2Z0YA 5GM8A 2I6DA 1O6DA 4YPXA 1GZ0A 4YVHA 4YQKA 1UAJA 3E5YA 1V2XA 4YQBA 4YQ9A 4JWJA 3OIIA 5GMBA 3L8UA 3NK7A 4YPYA 4YQ3A 4YQIA 4JWFA 1X7OA 2O3AA 4KDZA 4PZKA 4YQOA 4JAKA 3AXZA 1UALA 4FMWA 4YQAA 3QUVA 3KNUA 4YPZA 4JWGA 4MCBA 1K3RA 4J3CA 1J85A 2HA8A 3AI9X 3IEFA 1IPAA 4H3ZA 3IC6A 3ONPA 4JALA 3BBEA 3GYQA 1UAMA 2V3JA 5FAIA 1Z85A 1MXIA 2YY8A 4H3YA 4YQLA 2EGWA 4CNDA 4YVIA 3BBDA 4RG1A 1P9PA 1X7PA 3KY7A 4YQDA 3OINA 4YPWA 2EGVA 1OY5A 4YQTA 4YQGA 4YQSA 4CNEA 4XBOA 2CX8A 1ZJRA 2QMMA 3N4KA 3AIAA 1NXZA 4YQRA 4YQPA 2QWVA 4YQ1A 4FAKA 4L69A 4MCCA 4YQQA 5GMCA 4X3LA 4E8BA 1NS5A 3BBHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2V3K A;  2NWA A;  3KTY A;  4YQ2 A;  1UAK A;  1VHY A;  4YVG A;  4YQN A;  5D9F A;  3ILK A;  3OIJ A;  4YQ6 A;  3N4J A;  4YQ5 A;  4KGN A;  4YQ8 A;  3KW2 A;  4YVK A;  3NK6 A;  4YQC A;  1VHK A;  4YQ7 A;  4MCD A;  4X3M A;  4CNG A;  4YQ4 A;  3O7B A;  4IG6 A;  4YQJ A;  4CNF A;  4YQ0 A;  1V6Z A;  3DCM X;  1VH0 A;  1TO0 A;  5CO4 A;  4YVJ A;  2Z0Y A;  5GM8 A;  2I6D A;  1O6D A;  4YPX A;  1GZ0 A;  4YVH A;  4YQK A;  1UAJ A;  3E5Y A;  1V2X A;  4YQB A;  4YQ9 A;  3OII A;  5GMB A;  3L8U A;  3NK7 A;  4YPY A;  4YQ3 A;  4YQI A;  1X7O A;  2O3A A;  4KDZ A;  4PZK A;  4YQO A;  4JAK A;  3AXZ A;  1UAL A;  4YQA A;  3QUV A;  3KNU A;  4YPZ A;  4MCB A;  1K3R A;  4J3C A;  1J85 A;  2HA8 A;  3AI9 X;  3IEF A;  1IPA A;  4H3Z A;  3IC6 A;  3ONP A;  4JAL A;  3BBE A;  3GYQ A;  1UAM A;  2V3J A;  5FAI A;  1Z85 A;  1MXI A;  2YY8 A;  4H3Y A;  4YQL A;  2EGW A;  4CND A;  4YVI A;  3BBD A;  4RG1 A;  1P9P A;  1X7P A;  3KY7 A;  4YQD A;  3OIN A;  4YPW A;  2EGV A;  1OY5 A;  4YQT A;  4YQG A;  4YQS A;  4CNE A;  4XBO A;  2CX8 A;  1ZJR A;  2QMM A;  3N4K A;  3AIA A;  1NXZ A;  4YQR A;  4YQP A;  2QWV A;  4YQ1 A;  4FAK A;  4L69 A;  4MCC A;  4YQQ A;  5GMC A;  4X3L A;  4E8B A;  1NS5 A;  3BBH A; 
#chains in the Genus database with same CATH topology
 2GAE A;  1QRT A;  2V3K A;  2NWA A;  5GAG W;  1B75 A;  3KTY A;  4YQ2 A;  4H4K A;  1VHY A;  1UAK A;  4YVG A;  4YQN A;  5D9F A;  5GAD W;  3ILK A;  3OIJ A;  4IO9 S;  4WCE S;  4YQ6 A;  4JWH A;  1EUY A;  3N4J A;  3CF5 S;  4WF9 S;  4YQ5 A;  2PJJ A;  4KGN A;  4WFN S;  1QRS A;  5JVG S;  2RD2 A;  4YQ8 A;  3KW2 A;  1O0B A;  4YVK A;  2PNW A;  3NK6 A;  4YQC A;  2AE0 X;  1EUQ A;  1QTQ A;  1VHK A;  4JYZ A;  4YQ7 A;  5JVH S;  4MCD A;  4X3M A;  4CNG A;  4YQ4 A;  3O7B A;  4IG6 A;  4YQJ A;  5IZN A;  4CNF A;  4YQ0 A;  1V6Z A;  3DCM X;  1VH0 A;  4P2B A;  5HL7 S;  1TO0 A;  1QRU A;  2G5D A;  2RE8 A;  5CO4 A;  4YVJ A;  4H3S A;  2Z0Y A;  5GM8 A;  2I6D A;  5GAE W;  5GAH W;  4IOA S;  1O6D A;  2ZJR S;  3J7Z V;  4YPX A;  4JXX A;  1GZ0 A;  4YVH A;  4YQK A;  2PI8 A;  1UAJ A;  3E5Y A;  1V2X A;  4YQB A;  4YQ9 A;  3DLL S;  4JWJ A;  3PIO S;  2ZJQ S;  3OII A;  5GMB A;  3CZB A;  3L8U A;  1D6K A;  5BNZ A;  3NK7 A;  5DM7 S;  4YPY A;  4UY8 8;  4YQ3 A;  4YQI A;  1X7O A;  4JXZ A;  4JWF A;  2O3A A;  1GTR A;  4KDZ A;  1NYL A;  4PZK A;  4WFA S;  4YQO A;  4JAK A;  3AXZ A;  1UAL A;  4FMW A;  4YQA A;  3QUV A;  3KNU A;  4IOC S;  4YPZ A;  4JWG A;  4MCB A;  1K3R A;  1ZJW A;  4J3C A;  1J85 A;  2HA8 A;  3AI9 X;  3IEF A;  1IPA A;  4H3Z A;  3IC6 A;  3ONP A;  4JAL A;  3AII A;  3BBE A;  1EXD A;  3GYQ A;  1UAM A;  2V3J A;  2ZJP S;  5FAI A;  1Z85 A;  2HZ7 A;  1MXI A;  2YY8 A;  4H3Y A;  4YQL A;  2EGW A;  4CND A;  4YVI A;  3BBD A;  4RG1 A;  1UDX A;  1P9P A;  1X7P A;  3KY7 A;  4YQD A;  3OIN A;  3X1L B;  4YPW A;  2EGV A;  1OY5 A;  4YQT A;  4YQG A;  4YQS A;  4CNE A;  4XBO A;  5DM6 S;  2CX8 A;  1ZJR A;  2QMM A;  3N4K A;  4V19 4;  2PIC A;  3AIA A;  1NXZ A;  4YQR A;  3W2W B;  1O0C A;  4YQP A;  4U67 S;  2QWV A;  1GTS A;  4YQ1 A;  4FAK A;  4L69 A;  3W2V B;  2G6G A;  4MCC A;  4YQQ A;  5GMC A;  4WFB S;  4X3L A;  4E8B A;  1NS5 A;  3PIP S;  1FEU A;  1DFU P;  3BBH A; 
#chains in the Genus database with same CATH homology
 2V3K A;  2NWA A;  3KTY A;  4YQ2 A;  1UAK A;  1VHY A;  4YVG A;  4YQN A;  5D9F A;  3ILK A;  3OIJ A;  4YQ6 A;  4JWH A;  3N4J A;  4YQ5 A;  4KGN A;  4YQ8 A;  3KW2 A;  4YVK A;  3NK6 A;  4YQC A;  1VHK A;  4YQ7 A;  4MCD A;  4X3M A;  4CNG A;  4YQ4 A;  3O7B A;  4IG6 A;  4YQJ A;  4CNF A;  4YQ0 A;  1V6Z A;  3DCM X;  1VH0 A;  1TO0 A;  5CO4 A;  4YVJ A;  2Z0Y A;  5GM8 A;  2I6D A;  1O6D A;  4YPX A;  1GZ0 A;  4YVH A;  4YQK A;  1UAJ A;  3E5Y A;  1V2X A;  4YQB A;  4YQ9 A;  4JWJ A;  3OII A;  5GMB A;  3L8U A;  3NK7 A;  4YPY A;  4YQ3 A;  4YQI A;  4JWF A;  1X7O A;  2O3A A;  4KDZ A;  4PZK A;  4YQO A;  4JAK A;  3AXZ A;  1UAL A;  4FMW A;  4YQA A;  3QUV A;  3KNU A;  4YPZ A;  4JWG A;  4MCB A;  1K3R A;  4J3C A;  1J85 A;  2HA8 A;  3AI9 X;  3IEF A;  1IPA A;  4H3Z A;  3IC6 A;  3ONP A;  4JAL A;  3BBE A;  3GYQ A;  1UAM A;  2V3J A;  5FAI A;  1Z85 A;  1MXI A;  2YY8 A;  4H3Y A;  4YQL A;  2EGW A;  4CND A;  4YVI A;  3BBD A;  4RG1 A;  1P9P A;  1X7P A;  3KY7 A;  4YQD A;  3OIN A;  4YPW A;  2EGV A;  1OY5 A;  4YQT A;  4YQG A;  4YQS A;  4CNE A;  4XBO A;  2CX8 A;  1ZJR A;  2QMM A;  3N4K A;  3AIA A;  1NXZ A;  4YQR A;  4YQP A;  2QWV A;  4YQ1 A;  4FAK A;  4L69 A;  4MCC A;  4YQQ A;  5GMC A;  4X3L A;  4E8B A;  1NS5 A;  3BBH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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