The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
10
|
sequence length |
81
|
structure length |
80
|
Chain Sequence |
b'MGMPVEFNTLIVTKGKEVRIDENIFTLEKDGYRVYPMEIPMDVRKTKFEKSGTAEVQKLQWEEGRTIITYKLTSLHSVNL'
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule keywords |
Hypothetical protein ytmB
|
| publication title |
Crystal Structure of the Hypothetical protein YtmB from Bacillus subtilis subsp. (subtilis str. 168), Northeast Structural Genomics target SR466
rcsb |
| source organism |
Bacillus subtilis
|
| molecule tags |
Structural genomics, unknown function
|
| total genus |
10
|
| structure length |
80
|
| sequence length |
81
|
| chains with identical sequence |
B, C, D, E, F, G, H
|
| ec nomenclature | |
| pdb deposition date | 2006-11-14 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF10763 | DUF2584 | Protein of unknown function (DUF2584) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | Ribosomal Protein L25; Chain P | Hypothetical PUA domain-like; domain 1 |
#chains in the Genus database with same CATH superfamily 1V6Z A; 2NWA A; 4L69 A; 1NXZ A; 4E8B A; 3KW2 A; 2Z0Y A; 4J3C A; 1VHY A; 2EGV A; 1VHK A; 2CX8 A; 2EGW A; 1Z85 A; #chains in the Genus database with same CATH topology 5DM7 S; 5BNZ A; 3KW2 A; 1UDX A; 5JVH S; 4J3C A; 2RD2 A; 2RE8 A; 2PJJ A; 1QRU A; 2CX8 A; 4WCE S; 1D6K A; 1V6Z A; 5GAH W; 4L69 A; 4WFA S; 1VHK A; 1QTQ A; 4H3S A; 1GTS A; 2NWA A; 4IOC S; 2G5D A; 2Z0Y A; 5IZN A; 2ZJQ S; 3CF5 S; 4E8B A; 4U67 S; 4V19 4; 3W2W B; 3PIO S; 2EGW A; 5JVG S; 1QRS A; 2GAE A; 4WFN S; 2PI8 A; 2EGV A; 2G6G A; 3AII A; 1NXZ A; 3W2V B; 4H4K A; 4IOA S; 1EXD A; 3DLL S; 1VHY A; 3J7Z V; 2PNW A; 1EUY A; 1FEU A; 1DFU P; 5GAD W; 1EUQ A; 4JYZ A; 4WF9 S; 3CZB A; 3PIP S; 1O0B A; 5HL7 S; 4P2B A; 3X1L B; 2ZJR S; 1GTR A; 1QRT A; 1B75 A; 2ZJP S; 4UY8 8; 4JXX A; 1O0C A; 2PIC A; 4IO9 S; 5GAE W; 5GAG W; 2HZ7 A; 1NYL A; 2AE0 X; 5DM6 S; 4JXZ A; 1ZJW A; 4WFB S; 1Z85 A; #chains in the Genus database with same CATH homology 1V6Z A; 2NWA A; 4L69 A; 1NXZ A; 4E8B A; 3KW2 A; 2Z0Y A; 4J3C A; 1VHY A; 2EGV A; 1VHK A; 2CX8 A; 2EGW A; 1Z85 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
