2NWAA

X-ray crystal structure of protein ytmb from bacillus subtilis. northeast structural genomics consortium target sr466
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
81
structure length
80
Chain Sequence
b'MGMPVEFNTLIVTKGKEVRIDENIFTLEKDGYRVYPMEIPMDVRKTKFEKSGTAEVQKLQWEEGRTIITYKLTSLHSVNL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of the Hypothetical protein YtmB from Bacillus subtilis subsp. (subtilis str. 168), Northeast Structural Genomics target SR466
rcsb
molecule keywords Hypothetical protein ytmB
source organism Bacillus subtilis
molecule tags Structural genomics, unknown function
total genus 10
structure length 80
sequence length 81
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2006-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF10763 DUF2584 Protein of unknown function (DUF2584)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.20 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Hypothetical PUA domain-like; domain 1 2nwaA01
4L69A 1VHYA 2NWAA 1Z85A 3KW2A 1V6ZA 4E8BA 1VHKA 2EGWA 2Z0YA 4J3CA 2EGVA 1NXZA 2CX8A
chains in the Genus database with same CATH superfamily
4H3SA 1NXZA 2EGWA 1VHYA 2ZJQS 2Z0YA 4J3CA 1FEUA 4JXZA 1VHKA 1EXDA 5GAGW 2ZJRS 3AIIA 1ZJWA 4IO9S 1QTQA 2GAEA 1GTSA 4WFAS 4JXXA 2NWAA 3CF5S 4WF9S 1O0CA 4WFBS 4WCES 3DLLS 5IZNA 1GTRA 5BNZA 5GADW 2RE8A 2G5DA 2G6GA 4IOCS 3W2VB 1QRTA 4L69A 4JYZA 3W2WB 2ZJPS 4IOAS 5HL7S 3X1LB 1Z85A 3PIPS 1V6ZA 2RD2A 1NYLA 5DM7S 1QRUA 1O0BA 1DFUP 2HZ7A 5DM6S 1QRSA 3CZBA 2EGVA 1B75A 5JVHS 4E8BA 2PNWA 1EUYA 4V194 5JVGS 3KW2A 3J7ZV 2AE0X 1UDXA 3PIOS 2PJJA 4WFNS 4U67S 1EUQA 4P2BA 2PI8A 4H4KA 5GAHW 1D6KA 4UY88 2PICA 5GAEW 2CX8A
chains in the Genus database with same CATH topology
4L69A 1VHYA 2NWAA 1Z85A 3KW2A 1V6ZA 4E8BA 1VHKA 2EGWA 2Z0YA 4J3CA 2EGVA 1NXZA 2CX8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4L69 A;  1VHY A;  2NWA A;  1Z85 A;  3KW2 A;  1V6Z A;  4E8B A;  1VHK A;  2EGW A;  2Z0Y A;  4J3C A;  2EGV A;  1NXZ A;  2CX8 A; 
#chains in the Genus database with same CATH topology
 4H3S A;  1NXZ A;  2EGW A;  1VHY A;  2ZJQ S;  2Z0Y A;  4J3C A;  1FEU A;  4JXZ A;  1VHK A;  1EXD A;  5GAG W;  2ZJR S;  3AII A;  1ZJW A;  4IO9 S;  1QTQ A;  2GAE A;  1GTS A;  4WFA S;  4JXX A;  2NWA A;  3CF5 S;  4WF9 S;  1O0C A;  4WFB S;  4WCE S;  3DLL S;  5IZN A;  1GTR A;  5BNZ A;  5GAD W;  2RE8 A;  2G5D A;  2G6G A;  4IOC S;  3W2V B;  1QRT A;  4L69 A;  4JYZ A;  3W2W B;  2ZJP S;  4IOA S;  5HL7 S;  3X1L B;  1Z85 A;  3PIP S;  1V6Z A;  2RD2 A;  1NYL A;  5DM7 S;  1QRU A;  1O0B A;  1DFU P;  2HZ7 A;  5DM6 S;  1QRS A;  3CZB A;  2EGV A;  1B75 A;  5JVH S;  4E8B A;  2PNW A;  1EUY A;  4V19 4;  5JVG S;  3KW2 A;  3J7Z V;  2AE0 X;  1UDX A;  3PIO S;  2PJJ A;  4WFN S;  4U67 S;  1EUQ A;  4P2B A;  2PI8 A;  4H4K A;  5GAH W;  1D6K A;  4UY8 8;  2PIC A;  5GAE W;  2CX8 A; 
#chains in the Genus database with same CATH homology
 4L69 A;  1VHY A;  2NWA A;  1Z85 A;  3KW2 A;  1V6Z A;  4E8B A;  1VHK A;  2EGW A;  2Z0Y A;  4J3C A;  2EGV A;  1NXZ A;  2CX8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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