2NWAA

X-ray crystal structure of protein ytmb from bacillus subtilis. northeast structural genomics consortium target sr466
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
81
structure length
80
Chain Sequence
MGMPVEFNTLIVTKGKEVRIDENIFTLEKDGYRVYPMEIPMDVRKTKFEKSGTAEVQKLQWEEGRTIITYKLTSLHSVNL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
source organism Bacillus subtilis
publication title Crystal Structure of the Hypothetical protein YtmB from Bacillus subtilis subsp. (subtilis str. 168), Northeast Structural Genomics target SR466
rcsb
molecule keywords Hypothetical protein ytmB
total genus 10
structure length 80
sequence length 81
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2006-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF10763 DUF2584 Protein of unknown function (DUF2584)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.20 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Hypothetical PUA domain-like; domain 1 2nwaA01
4J3CA 4E8BA 1VHYA 1Z85A 1V6ZA 1VHKA 3KW2A 2NWAA 2EGWA 2EGVA 1NXZA 2CX8A 2Z0YA 4L69A
chains in the Genus database with same CATH superfamily
1O0CA 2CX8A 2GAEA 1EXDA 4V194 1ZJWA 4E8BA 3KW2A 1NYLA 2EGVA 4WF9S 5GAHW 3PIPS 1VHYA 2NWAA 3W2WB 1QRSA 4IOAS 3J7ZV 5IZNA 3X1LB 1UDXA 4L69A 3AIIA 3CZBA 5DM7S 3W2VB 1B75A 2RE8A 1VHKA 5GAEW 2EGWA 4UY88 4WFNS 2AE0X 3CF5S 2ZJPS 2PNWA 4J3CA 4P2BA 1V6ZA 4WCES 2PICA 5DM6S 4U67S 1GTRA 1EUQA 1QTQA 4JXXA 2HZ7A 1QRTA 4JXZA 2ZJQS 2PI8A 4IO9S 1D6KA 1DFUP 4IOCS 2G5DA 1Z85A 1EUYA 1O0BA 1GTSA 1NXZA 4WFBS 4H4KA 5GAGW 1FEUA 5BNZA 2RD2A 5JVHS 5JVGS 2Z0YA 4WFAS 2G6GA 3DLLS 2PJJA 5HL7S 3PIOS 1QRUA 5GADW 4H3SA 4JYZA 2ZJRS
chains in the Genus database with same CATH topology
4J3CA 4E8BA 1VHYA 1Z85A 1V6ZA 1VHKA 3KW2A 2NWAA 2EGWA 2EGVA 1NXZA 2CX8A 2Z0YA 4L69A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4J3C A;  4E8B A;  1VHY A;  1Z85 A;  1V6Z A;  1VHK A;  3KW2 A;  2NWA A;  2EGW A;  2EGV A;  1NXZ A;  2CX8 A;  2Z0Y A;  4L69 A; 
#chains in the Genus database with same CATH topology
 1O0C A;  2CX8 A;  2GAE A;  1EXD A;  4V19 4;  1ZJW A;  4E8B A;  3KW2 A;  1NYL A;  2EGV A;  4WF9 S;  5GAH W;  3PIP S;  1VHY A;  2NWA A;  3W2W B;  1QRS A;  4IOA S;  3J7Z V;  5IZN A;  3X1L B;  1UDX A;  4L69 A;  3AII A;  3CZB A;  5DM7 S;  3W2V B;  1B75 A;  2RE8 A;  1VHK A;  5GAE W;  2EGW A;  4UY8 8;  4WFN S;  2AE0 X;  3CF5 S;  2ZJP S;  2PNW A;  4J3C A;  4P2B A;  1V6Z A;  4WCE S;  2PIC A;  5DM6 S;  4U67 S;  1GTR A;  1EUQ A;  1QTQ A;  4JXX A;  2HZ7 A;  1QRT A;  4JXZ A;  2ZJQ S;  2PI8 A;  4IO9 S;  1D6K A;  1DFU P;  4IOC S;  2G5D A;  1Z85 A;  1EUY A;  1O0B A;  1GTS A;  1NXZ A;  4WFB S;  4H4K A;  5GAG W;  1FEU A;  5BNZ A;  2RD2 A;  5JVH S;  5JVG S;  2Z0Y A;  4WFA S;  2G6G A;  3DLL S;  2PJJ A;  5HL7 S;  3PIO S;  1QRU A;  5GAD W;  4H3S A;  4JYZ A;  2ZJR S; 
#chains in the Genus database with same CATH homology
 4J3C A;  4E8B A;  1VHY A;  1Z85 A;  1V6Z A;  1VHK A;  3KW2 A;  2NWA A;  2EGW A;  2EGV A;  1NXZ A;  2CX8 A;  2Z0Y A;  4L69 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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