4WFAS

The crystal structure of the large ribosomal subunit of staphylococcus aureus in complex with linezolid
Total Genus 18
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
167
structure length
167
Chain Sequence
SLKSIIRQGKQTRSDLKQLRKSGKVPAVVYGYGTKNVSVKVDEVEFIKVIREVGRNGVIELGVGSKTIKVMVADYQFDPLKNQITHIDFLAINMSEERTVEVPVQLVGEAVGAKEGGVVEQPLFNLEVTATPDNIPEAIEVDITELNINDSLTVADVKVTGDFKIEN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords 23S rRNA
publication title Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus.
pubmed doi rcsb
molecule tags Ribosome
total genus 18
structure length 167
sequence length 167
ec nomenclature
pdb deposition date 2014-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF01386 Ribosomal_L25p Ribosomal L25p family
S PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 4wfaS01
2.170.120.20 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 Ribosomal protein L25, beta domain 4wfaS02
4H3SA 4P2BA 1EUYA 1ZJWA 5GAHW 1D6KA 4WCES 4IO9S 3AIIA 4IOAS 1NYLA 1QRSA 5IZNA 1FEUA 4UY88 1B75A 1QRUA 4JXZA 4WFBS 5GAGW 2ZJQS 4U67S 4WF9S 1O0CA 3DLLS 1O0BA 3J7ZV 3PIPS 1DFUP 5DM6S 1GTSA 3CF5S 1QTQA 4WFNS 1EUQA 2RD2A 5BNZA 5DM7S 5GAEW 3PIOS 2ZJPS 2ZJRS 2RE8A 1QRTA 2HZ7A 4JXXA 1EXDA 4IOCS 1GTRA 4WFAS 4JYZA 5GADW 5HL7S 5JVGS 5JVHS
chains in the Genus database with same CATH superfamily
4C2MC 4QIWD 1VHKA 4YFKA 4P2BA 1NXZA 1Y1VC 1I6HC 3AIIA 4JK1A 2CX8A 3S1NC 1QRSA 4OIOA 5IZNA 4LJZA 5IYCC 2NVTC 3S17C 3S15C 4UY88 4BXXC 2Z0YA 3GTQC 2PICA 2CW0A 4MQ9A 4A3CC 2WB1D 3PO3C 1DFUP 4KN7A 1TWCC 1TWFC 3CF5S 3H3VD 2EGWA 1R9TC 2A6EA 4A3LC 1EUQA 2KXYA 2RD2A 2JA5C 2ZJPS 4C3IC 4JXXA 3S1QC 4A3MC 4IOCS 1GTRA 5IYDC 2G6GA 2NVXC 2PPBA 4OINA 5GADW 5C3EC 3GTMC 3HOUC 5HL7S 1YNNA 5JVGS 4WF9S 4YFNA 4A3IC 3GTLC 1SFOC 2B63C 2O5JA 4YFXA 1TWGC 4J3CA 5GAHW 3S1MC 3HOZC 2VUMC 1TWHC 3W2WB 4XSZA 4C3HC 3EQLA 1FEUA 2E2HC 4A3DC 4A3KC 3WODA 2AE0X 1VHYA 3GTJC 3M4OC 2A6HA 2NWAA 4U67S 4OIQA 1YNJA 4Q4ZA 3DLLS 1O0BA 3H0GC 4OIPA 2L5NA 5DM6S 1GTSA 3LYWA 1Y1WC 4X6AC 2EGVA 2YU9C 3X1LB 4QJVA 3S2HC 4G7OA 5DM7S 4Q5SA 2PA8D 1QRTA 2NVYC 2R93C 4XLNA 4A3BC 2G5DA 4Y52C 5FLMC 3M3YC 1Z85A 2GAEA 1UDXA 1SMYA 3S14C 4BY7C 3DXJA 2R7ZC 2A69A 1K83C 4H4KA 3GTKC 3CZBA 2L3UA 1ZJWA 4IO9S 3S2DC 4IOAS 3I4NC 4A3GC 1WCMC 1I50C 1ZYRA 1B75A 4MEYA 1QRUA 3HOYC 2E2IC 3GTOC 4L69A 5GAGW 2ZJQS 4LLGA 3HOXC 1O0CA 4A3JC 3J7ZV 4AYBD 5C4XC 3W2VB 3GTPC 3S1RC 4C3JC 2PJJA 4V194 1I6VA 1QTQA 1HQMA 2KPUA 5HQHA 4G7HA 5TMCA 3I4MC 1I3QC 3PIOS 3K7AC 5GAEW 2ZJRS 4LK0A 2RE8A 4A3EC 1EXDA 4YG2A 4A3FC 4MEXA 3GTGC 4ZH4A 2PMZD 5C4JC 2KQ1A 3CQZC 4XLPA 5JVHS 2Y0SD 4NOIA 4H3SA 4Y7NC 3PO2C 1EUYA 5IP9C 3S16C 1IW7A 3FKIC 4BBRC 2PI8A 1D6KA 4WCES 4KMUA 2R92C 1NYLA 4KN4A 4A93C 1V6ZA 1TWAC 4G7ZA 2JA6C 4JXZA 2E2JC 2A68A 4WFBS 2WAQD 1BDFA 3HKZD 5IYBC 4GZYA 2O5IA 3PIPS 4OIRA 2PNWA 3HOWC 2JA8C 4XSXA 4LK1A 4WFNS 5TMFA 5C44C 2BE5A 4E8BA 2NVQC 4BBSC 3RZDC 5IP7C 5BNZA 3RZOC 2HZ7A 3HOVC 3KW2A 4WFAS 4JYZA 5D4DA 4BY1C 2JA7C
chains in the Genus database with same CATH topology
4H3SA 4H4KA 4P2BA 1EUYA 1ZJWA 5GAHW 1D6KA 4WCES 4IO9S 3AIIA 4IOAS 1NYLA 3W2WB 1QRSA 5IZNA 1FEUA 4UY88 1B75A 1QRUA 4JXZA 4WFBS 5GAGW 2ZJQS 4U67S 4WF9S 1O0CA 3DLLS 1O0BA 3J7ZV 3PIPS 1DFUP 5DM6S 1GTSA 3W2VB 3CF5S 4V194 1QTQA 4WFNS 1EUQA 3X1LB 2RD2A 5BNZA 5DM7S 5GAEW 3PIOS 2ZJPS 2ZJRS 2RE8A 1QRTA 2HZ7A 4JXXA 1EXDA 4IOCS 1GTRA 4WFAS 4JYZA 5GADW 1UDXA 5HL7S 5JVGS 5JVHS
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4H3S A;  4P2B A;  1EUY A;  1ZJW A;  5GAH W;  1D6K A;  4WCE S;  4IO9 S;  3AII A;  4IOA S;  1NYL A;  1QRS A;  5IZN A;  1FEU A;  4UY8 8;  1B75 A;  1QRU A;  4JXZ A;  4WFB S;  5GAG W;  2ZJQ S;  4U67 S;  4WF9 S;  1O0C A;  3DLL S;  1O0B A;  3J7Z V;  3PIP S;  1DFU P;  5DM6 S;  1GTS A;  3CF5 S;  1QTQ A;  4WFN S;  1EUQ A;  2RD2 A;  5BNZ A;  5DM7 S;  5GAE W;  3PIO S;  2ZJP S;  2ZJR S;  2RE8 A;  1QRT A;  2HZ7 A;  4JXX A;  1EXD A;  4IOC S;  1GTR A;  4WFA S;  4JYZ A;  5GAD W;  5HL7 S;  5JVG S;  5JVH S; 
#chains in the Genus database with same CATH topology
 4C2M C;  4QIW D;  1VHK A;  4YFK A;  4P2B A;  1NXZ A;  1Y1V C;  1I6H C;  3AII A;  4JK1 A;  2CX8 A;  3S1N C;  1QRS A;  4OIO A;  5IZN A;  4LJZ A;  5IYC C;  2NVT C;  3S17 C;  3S15 C;  4UY8 8;  4BXX C;  2Z0Y A;  3GTQ C;  2PIC A;  2CW0 A;  4MQ9 A;  4A3C C;  2WB1 D;  3PO3 C;  1DFU P;  4KN7 A;  1TWC C;  1TWF C;  3CF5 S;  3H3V D;  2EGW A;  1R9T C;  2A6E A;  4A3L C;  1EUQ A;  2KXY A;  2RD2 A;  2JA5 C;  2ZJP S;  4C3I C;  4JXX A;  3S1Q C;  4A3M C;  4IOC S;  1GTR A;  5IYD C;  2G6G A;  2NVX C;  2PPB A;  4OIN A;  5GAD W;  5C3E C;  3GTM C;  3HOU C;  5HL7 S;  1YNN A;  5JVG S;  4WF9 S;  4YFN A;  4A3I C;  3GTL C;  1SFO C;  2B63 C;  2O5J A;  4YFX A;  1TWG C;  4J3C A;  5GAH W;  3S1M C;  3HOZ C;  2VUM C;  1TWH C;  3W2W B;  4XSZ A;  4C3H C;  3EQL A;  1FEU A;  2E2H C;  4A3D C;  4A3K C;  3WOD A;  2AE0 X;  1VHY A;  3GTJ C;  3M4O C;  2A6H A;  2NWA A;  4U67 S;  4OIQ A;  1YNJ A;  4Q4Z A;  3DLL S;  1O0B A;  3H0G C;  4OIP A;  2L5N A;  5DM6 S;  1GTS A;  3LYW A;  1Y1W C;  4X6A C;  2EGV A;  2YU9 C;  3X1L B;  4QJV A;  3S2H C;  4G7O A;  5DM7 S;  4Q5S A;  2PA8 D;  1QRT A;  2NVY C;  2R93 C;  4XLN A;  4A3B C;  2G5D A;  4Y52 C;  5FLM C;  3M3Y C;  1Z85 A;  2GAE A;  1UDX A;  1SMY A;  3S14 C;  4BY7 C;  3DXJ A;  2R7Z C;  2A69 A;  1K83 C;  4H4K A;  3GTK C;  3CZB A;  2L3U A;  1ZJW A;  4IO9 S;  3S2D C;  4IOA S;  3I4N C;  4A3G C;  1WCM C;  1I50 C;  1ZYR A;  1B75 A;  4MEY A;  1QRU A;  3HOY C;  2E2I C;  3GTO C;  4L69 A;  5GAG W;  2ZJQ S;  4LLG A;  3HOX C;  1O0C A;  4A3J C;  3J7Z V;  4AYB D;  5C4X C;  3W2V B;  3GTP C;  3S1R C;  4C3J C;  2PJJ A;  4V19 4;  1I6V A;  1QTQ A;  1HQM A;  2KPU A;  5HQH A;  4G7H A;  5TMC A;  3I4M C;  1I3Q C;  3PIO S;  3K7A C;  5GAE W;  2ZJR S;  4LK0 A;  2RE8 A;  4A3E C;  1EXD A;  4YG2 A;  4A3F C;  4MEX A;  3GTG C;  4ZH4 A;  2PMZ D;  5C4J C;  2KQ1 A;  3CQZ C;  4XLP A;  5JVH S;  2Y0S D;  4NOI A;  4H3S A;  4Y7N C;  3PO2 C;  1EUY A;  5IP9 C;  3S16 C;  1IW7 A;  3FKI C;  4BBR C;  2PI8 A;  1D6K A;  4WCE S;  4KMU A;  2R92 C;  1NYL A;  4KN4 A;  4A93 C;  1V6Z A;  1TWA C;  4G7Z A;  2JA6 C;  4JXZ A;  2E2J C;  2A68 A;  4WFB S;  2WAQ D;  1BDF A;  3HKZ D;  5IYB C;  4GZY A;  2O5I A;  3PIP S;  4OIR A;  2PNW A;  3HOW C;  2JA8 C;  4XSX A;  4LK1 A;  4WFN S;  5TMF A;  5C44 C;  2BE5 A;  4E8B A;  2NVQ C;  4BBS C;  3RZD C;  5IP7 C;  5BNZ A;  3RZO C;  2HZ7 A;  3HOV C;  3KW2 A;  4WFA S;  4JYZ A;  5D4D A;  4BY1 C;  2JA7 C; 
#chains in the Genus database with same CATH homology
 4H3S A;  4H4K A;  4P2B A;  1EUY A;  1ZJW A;  5GAH W;  1D6K A;  4WCE S;  4IO9 S;  3AII A;  4IOA S;  1NYL A;  3W2W B;  1QRS A;  5IZN A;  1FEU A;  4UY8 8;  1B75 A;  1QRU A;  4JXZ A;  4WFB S;  5GAG W;  2ZJQ S;  4U67 S;  4WF9 S;  1O0C A;  3DLL S;  1O0B A;  3J7Z V;  3PIP S;  1DFU P;  5DM6 S;  1GTS A;  3W2V B;  3CF5 S;  4V19 4;  1QTQ A;  4WFN S;  1EUQ A;  3X1L B;  2RD2 A;  5BNZ A;  5DM7 S;  5GAE W;  3PIO S;  2ZJP S;  2ZJR S;  2RE8 A;  1QRT A;  2HZ7 A;  4JXX A;  1EXD A;  4IOC S;  1GTR A;  4WFA S;  4JYZ A;  5GAD W;  1UDX A;  5HL7 S;  5JVG S;  5JVH S; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...