4WF9S

The crystal structure of the large ribosomal subunit of staphylococcus aureus in complex with telithromycin
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
167
structure length
167
Chain Sequence
SLKSIIRQGKQTRSDLKQLRKSGKVPAVVYGYGTKNVSVKVDEVEFIKVIREVGRNGVIELGVGSKTIKVMVADYQFDPLKNQITHIDFLAINMSEERTVEVPVQLVGEAVGAKEGGVVEQPLFNLEVTATPDNIPEAIEVDITELNINDSLTVADVKVTGDFKIEN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
publication title Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus.
pubmed doi rcsb
molecule keywords 23S ribosomal RNA
total genus 24
structure length 167
sequence length 167
ec nomenclature
pdb deposition date 2014-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF01386 Ribosomal_L25p Ribosomal L25p family
S PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 4wf9S01
2.170.120.20 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 Ribosomal protein L25, beta domain 4wf9S02
1D6KA 4WF9S 1FEUA 4JXZA 4P2BA 1DFUP 2ZJRS 1EXDA 1B75A 4WCES 3PIOS 5JVHS 1QTQA 5GADW 5DM7S 1NYLA 4WFNS 4IO9S 1EUQA 5JVGS 3DLLS 2RD2A 4JXXA 4WFAS 4JYZA 1O0BA 4IOAS 1QRSA 5GAHW 2ZJPS 1GTSA 3CF5S 2RE8A 4IOCS 5BNZA 3J7ZV 5IZNA 1QRTA 4H3SA 1ZJWA 3AIIA 1O0CA 1QRUA 2ZJQS 3PIPS 5DM6S 4WFBS 4U67S 1GTRA 2HZ7A 5GAEW 1EUYA 5GAGW 5HL7S 4UY88
chains in the Genus database with same CATH superfamily
4WF9S 2KPUA 2VUMC 1YNNA 1Y1WC 1B75A 4QIWD 4A3GC 2JA5C 3S17C 2NVQC 4OIOA 4XLNA 1I50C 1VHYA 1TWGC 2A6HA 4MEXA 5GADW 3PO3C 4KMUA 4BBSC 2NVYC 5JVGS 2RD2A 2JA8C 4A3DC 3GTGC 5D4DA 2R92C 3X1LB 1GTSA 1ZYRA 2PA8D 2RE8A 3LYWA 4YFXA 1SFOC 2NVTC 2G5DA 3GTKC 3S2HC 1IW7A 3H3VD 2WAQD 4LJZA 3S16C 4H3SA 3RZOC 4A93C 4QJVA 5C4JC 4A3JC 4G7OA 2ZJQS 4GZYA 3PIPS 4ZH4A 5DM6S 4WFBS 3W2VB 4AYBD 1YNJA 4OIQA 5C4XC 3DXJA 4JK1A 4LK0A 1UDXA 4C3JC 1EUYA 4NOIA 3S2DC 4XSXA 3S1RC 1D6KA 2R7ZC 3WODA 4P2BA 3S1QC 2ZJRS 2NWAA 5TMCA 3FKIC 5TMFA 5DM7S 1EUQA 4YG2A 4L69A 4JXXA 1TWAC 3GTJC 4C3HC 4IOAS 5IYDC 1QRSA 2ZJPS 3GTLC 1TWHC 5FLMC 1Y1VC 3CF5S 5IP9C 2O5IA 4Y52C 4XLPA 2PICA 3HOVC 5BNZA 3J7ZV 4KN4A 4G7HA 4Y7NC 3HOWC 1WCMC 2Y0SD 5IP7C 3S1NC 4A3KC 2R93C 2AE0X 1VHKA 2JA7C 4G7ZA 4U67S 3KW2A 4A3MC 4XSZA 2CW0A 1V6ZA 1TWCC 2A68A 4YFKA 3GTMC 4YFNA 3GTQC 1EXDA 4MEYA 4WCES 4C2MC 3PIOS 1R9TC 2E2HC 4A3CC 1QTQA 3I4NC 3HOXC 3EQLA 1HQMA 2PI8A 4WFNS 1NYLA 4V194 4X6AC 3S15C 2PPBA 2A69A 3GTOC 4MQ9A 5C44C 4WFAS 4OIPA 1I3QC 2KXYA 4BBRC 5IYCC 4IOCS 4A3BC 3W2WB 1QRTA 4Q4ZA 1ZJWA 3GTPC 1QRUA 2EGVA 5IYBC 4H4KA 3HOUC 4J3CA 2YU9C 4BXXC 3CZBA 4BY1C 3K7AC 2PJJA 3M4OC 5GAEW 1FEUA 3RZDC 2B63C 5HL7S 4UY88 1BDFA 4JXZA 2JA6C 1DFUP 5C3EC 3I4MC 3HOYC 2KQ1A 2NVXC 4OINA 5JVHS 2PNWA 2G6GA 2GAEA 5HQHA 3HKZD 2O5JA 1NXZA 4IO9S 3PO2C 2PMZD 1K83C 3DLLS 4Q5SA 3M3YC 4OIRA 4E8BA 2EGWA 4JYZA 4A3FC 1O0BA 2E2JC 3CQZC 5GAHW 4LLGA 3S1MC 4A3IC 2BE5A 4KN7A 3S14C 2L3UA 4A3EC 4C3IC 1SMYA 3HOZC 5IZNA 1Z85A 3AIIA 1O0CA 4LK1A 1I6VA 2WB1D 4A3LC 2E2IC 2CX8A 2Z0YA 2L5NA 2A6EA 3H0GC 1GTRA 2HZ7A 1TWFC 1I6HC 4BY7C 5GAGW
chains in the Genus database with same CATH topology
1D6KA 4WF9S 1FEUA 4JXZA 4P2BA 1DFUP 2ZJRS 1EXDA 1B75A 4WCES 1UDXA 3PIOS 5JVHS 1QTQA 5GADW 5DM7S 1NYLA 4WFNS 4IO9S 1EUQA 4V194 5JVGS 3DLLS 2RD2A 4JXXA 4WFAS 4JYZA 1O0BA 4IOAS 1QRSA 5GAHW 2ZJPS 3X1LB 1GTSA 3CF5S 2RE8A 4IOCS 3W2WB 5BNZA 5IZNA 3J7ZV 1QRTA 4H3SA 1ZJWA 3AIIA 1O0CA 1QRUA 2ZJQS 4H4KA 3PIPS 5DM6S 4WFBS 3W2VB 4U67S 1GTRA 2HZ7A 5GAEW 1EUYA 5GAGW 5HL7S 4UY88
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1D6K A;  4WF9 S;  1FEU A;  4JXZ A;  4P2B A;  1DFU P;  2ZJR S;  1EXD A;  1B75 A;  4WCE S;  3PIO S;  5JVH S;  1QTQ A;  5GAD W;  5DM7 S;  1NYL A;  4WFN S;  4IO9 S;  1EUQ A;  5JVG S;  3DLL S;  2RD2 A;  4JXX A;  4WFA S;  4JYZ A;  1O0B A;  4IOA S;  1QRS A;  5GAH W;  2ZJP S;  1GTS A;  3CF5 S;  2RE8 A;  4IOC S;  5BNZ A;  3J7Z V;  5IZN A;  1QRT A;  4H3S A;  1ZJW A;  3AII A;  1O0C A;  1QRU A;  2ZJQ S;  3PIP S;  5DM6 S;  4WFB S;  4U67 S;  1GTR A;  2HZ7 A;  5GAE W;  1EUY A;  5GAG W;  5HL7 S;  4UY8 8; 
#chains in the Genus database with same CATH topology
 4WF9 S;  2KPU A;  2VUM C;  1YNN A;  1Y1W C;  1B75 A;  4QIW D;  4A3G C;  2JA5 C;  3S17 C;  2NVQ C;  4OIO A;  4XLN A;  1I50 C;  1VHY A;  1TWG C;  2A6H A;  4MEX A;  5GAD W;  3PO3 C;  4KMU A;  4BBS C;  2NVY C;  5JVG S;  2RD2 A;  2JA8 C;  4A3D C;  3GTG C;  5D4D A;  2R92 C;  3X1L B;  1GTS A;  1ZYR A;  2PA8 D;  2RE8 A;  3LYW A;  4YFX A;  1SFO C;  2NVT C;  2G5D A;  3GTK C;  3S2H C;  1IW7 A;  3H3V D;  2WAQ D;  4LJZ A;  3S16 C;  4H3S A;  3RZO C;  4A93 C;  4QJV A;  5C4J C;  4A3J C;  4G7O A;  2ZJQ S;  4GZY A;  3PIP S;  4ZH4 A;  5DM6 S;  4WFB S;  3W2V B;  4AYB D;  1YNJ A;  4OIQ A;  5C4X C;  3DXJ A;  4JK1 A;  4LK0 A;  1UDX A;  4C3J C;  1EUY A;  4NOI A;  3S2D C;  4XSX A;  3S1R C;  1D6K A;  2R7Z C;  3WOD A;  4P2B A;  3S1Q C;  2ZJR S;  2NWA A;  5TMC A;  3FKI C;  5TMF A;  5DM7 S;  1EUQ A;  4YG2 A;  4L69 A;  4JXX A;  1TWA C;  3GTJ C;  4C3H C;  4IOA S;  5IYD C;  1QRS A;  2ZJP S;  3GTL C;  1TWH C;  5FLM C;  1Y1V C;  3CF5 S;  5IP9 C;  2O5I A;  4Y52 C;  4XLP A;  2PIC A;  3HOV C;  5BNZ A;  3J7Z V;  4KN4 A;  4G7H A;  4Y7N C;  3HOW C;  1WCM C;  2Y0S D;  5IP7 C;  3S1N C;  4A3K C;  2R93 C;  2AE0 X;  1VHK A;  2JA7 C;  4G7Z A;  4U67 S;  3KW2 A;  4A3M C;  4XSZ A;  2CW0 A;  1V6Z A;  1TWC C;  2A68 A;  4YFK A;  3GTM C;  4YFN A;  3GTQ C;  1EXD A;  4MEY A;  4WCE S;  4C2M C;  3PIO S;  1R9T C;  2E2H C;  4A3C C;  1QTQ A;  3I4N C;  3HOX C;  3EQL A;  1HQM A;  2PI8 A;  4WFN S;  1NYL A;  4V19 4;  4X6A C;  3S15 C;  2PPB A;  2A69 A;  3GTO C;  4MQ9 A;  5C44 C;  4WFA S;  4OIP A;  1I3Q C;  2KXY A;  4BBR C;  5IYC C;  4IOC S;  4A3B C;  3W2W B;  1QRT A;  4Q4Z A;  1ZJW A;  3GTP C;  1QRU A;  2EGV A;  5IYB C;  4H4K A;  3HOU C;  4J3C A;  2YU9 C;  4BXX C;  3CZB A;  4BY1 C;  3K7A C;  2PJJ A;  3M4O C;  5GAE W;  1FEU A;  3RZD C;  2B63 C;  5HL7 S;  4UY8 8;  1BDF A;  4JXZ A;  2JA6 C;  1DFU P;  5C3E C;  3I4M C;  3HOY C;  2KQ1 A;  2NVX C;  4OIN A;  5JVH S;  2PNW A;  2G6G A;  2GAE A;  5HQH A;  3HKZ D;  2O5J A;  1NXZ A;  4IO9 S;  3PO2 C;  2PMZ D;  1K83 C;  3DLL S;  4Q5S A;  3M3Y C;  4OIR A;  4E8B A;  2EGW A;  4JYZ A;  4A3F C;  1O0B A;  2E2J C;  3CQZ C;  5GAH W;  4LLG A;  3S1M C;  4A3I C;  2BE5 A;  4KN7 A;  3S14 C;  2L3U A;  4A3E C;  4C3I C;  1SMY A;  3HOZ C;  5IZN A;  1Z85 A;  3AII A;  1O0C A;  4LK1 A;  1I6V A;  2WB1 D;  4A3L C;  2E2I C;  2CX8 A;  2Z0Y A;  2L5N A;  2A6E A;  3H0G C;  1GTR A;  2HZ7 A;  1TWF C;  1I6H C;  4BY7 C;  5GAG W; 
#chains in the Genus database with same CATH homology
 1D6K A;  4WF9 S;  1FEU A;  4JXZ A;  4P2B A;  1DFU P;  2ZJR S;  1EXD A;  1B75 A;  4WCE S;  1UDX A;  3PIO S;  5JVH S;  1QTQ A;  5GAD W;  5DM7 S;  1NYL A;  4WFN S;  4IO9 S;  1EUQ A;  4V19 4;  5JVG S;  3DLL S;  2RD2 A;  4JXX A;  4WFA S;  4JYZ A;  1O0B A;  4IOA S;  1QRS A;  5GAH W;  2ZJP S;  3X1L B;  1GTS A;  3CF5 S;  2RE8 A;  4IOC S;  3W2W B;  5BNZ A;  5IZN A;  3J7Z V;  1QRT A;  4H3S A;  1ZJW A;  3AII A;  1O0C A;  1QRU A;  2ZJQ S;  4H4K A;  3PIP S;  5DM6 S;  4WFB S;  3W2V B;  4U67 S;  1GTR A;  2HZ7 A;  5GAE W;  1EUY A;  5GAG W;  5HL7 S;  4UY8 8; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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