4WF9S

The crystal structure of the large ribosomal subunit of staphylococcus aureus in complex with telithromycin
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
167
structure length
167
Chain Sequence
SLKSIIRQGKQTRSDLKQLRKSGKVPAVVYGYGTKNVSVKVDEVEFIKVIREVGRNGVIELGVGSKTIKVMVADYQFDPLKNQITHIDFLAINMSEERTVEVPVQLVGEAVGAKEGGVVEQPLFNLEVTATPDNIPEAIEVDITELNINDSLTVADVKVTGDFKIEN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 23S ribosomal RNA
publication title Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus.
pubmed doi rcsb
molecule tags Ribosome
total genus 24
structure length 167
sequence length 167
ec nomenclature
pdb deposition date 2014-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF01386 Ribosomal_L25p Ribosomal L25p family
S PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 4wf9S01
2.170.120.20 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 Ribosomal protein L25, beta domain 4wf9S02
1DFUP 4WFNS 5BNZA 4UY88 2RE8A 5JVHS 3AIIA 1B75A 5GADW 1QRUA 1QRSA 5IZNA 4WFAS 3DLLS 4IOCS 4IO9S 5DM6S 5HL7S 1EXDA 5GAHW 2RD2A 1EUQA 4H3SA 3CF5S 4WFBS 1FEUA 1NYLA 5GAEW 1ZJWA 1EUYA 1GTRA 2ZJPS 5JVGS 4WCES 1O0BA 2HZ7A 4WF9S 3PIPS 2ZJRS 3J7ZV 3PIOS 1O0CA 4JXZA 1GTSA 4P2BA 2ZJQS 4JXXA 1QTQA 4JYZA 5DM7S 5GAGW 1D6KA 4U67S 1QRTA 4IOAS
chains in the Genus database with same CATH superfamily
4WFNS 1TWGC 2NWAA 2WAQD 3HOUC 5JVHS 1V6ZA 5TMCA 2NVTC 4C2MC 3GTGC 4A3KC 3S15C 4KN4A 1I6VA 2KQ1A 2CX8A 3H3VD 3HOYC 5HL7S 1YNNA 2RD2A 4H3SA 3CF5S 4YFNA 4C3HC 3GTOC 3WODA 1HQMA 3DXJA 3S2HC 2ZJPS 5C3EC 5IP7C 5JVGS 2KPUA 4BY1C 4WCES 4A3IC 4KMUA 4WF9S 4XSXA 2PICA 4XLPA 4A3JC 2R7ZC 3RZOC 2L5NA 4QJVA 5C4JC 4A3BC 4MQ9A 2WB1D 2ZJQS 4BBRC 1QTQA 2PI8A 4UY88 1VHKA 1D6KA 4QIWD 2NVXC 4OINA 4XLNA 3HOZC 2VUMC 3GTPC 3KW2A 2A68A 2R93C 3HOWC 3I4MC 1Z85A 2AE0X 3S1RC 4A3LC 3GTQC 2EGVA 3M3YC 5IYBC 2E2JC 1WCMC 3DLLS 1Y1VC 4IO9S 2G6GA 2PPBA 1UDXA 1YNJA 4C3JC 3PO3C 3HOXC 3S1MC 2NVYC 3S17C 5GAEW 1ZJWA 2Z0YA 2PA8D 3I4NC 3K7AC 4A3GC 2BE5A 3CQZC 2HZ7A 1BDFA 4LLGA 4G7HA 3J7ZV 3EQLA 3CZBA 3GTMC 4L69A 2NVQC 2B63C 4A3MC 1TWCC 2E2IC 2G5DA 2YU9C 5FLMC 4JXXA 3FKIC 3LYWA 4V194 5GAGW 4MEXA 1QRTA 2GAEA 5TMFA 1DFUP 1Y1WC 5BNZA 4YG2A 3AIIA 4XSZA 5GADW 1QRUA 2O5IA 3HOVC 4J3CA 5IYDC 2EGWA 3H0GC 2PNWA 1QRSA 4YFXA 1K83C 1I6HC 3GTLC 3M4OC 5DM6S 4G7ZA 4YFKA 1EXDA 4NOIA 5GAHW 5C44C 1EUQA 1SMYA 1NYLA 1NXZA 4AYBD 1GTRA 4LK1A 1IW7A 5HQHA 1TWHC 3RZDC 4GZYA 3HKZD 2L3UA 2CW0A 4A3FC 4Q5SA 3PIPS 3X1LB 4JXZA 3W2VB 2A69A 4E8BA 1GTSA 4A3CC 2O5JA 2PJJA 3S1NC 4A93C 4BBSC 4P2BA 4X6AC 3PO2C 2A6EA 1TWFC 1I50C 4ZH4A 2JA5C 5DM7S 5D4DA 4Q4ZA 1I3QC 2E2HC 2PMZD 4LJZA 3W2WB 2RE8A 2R92C 4C3IC 1B75A 4BY7C 3S2DC 5C4XC 4MEYA 4Y7NC 2JA6C 5IZNA 2Y0SD 4WFAS 4H4KA 4IOCS 2A6HA 4OIOA 2JA8C 1TWAC 5IP9C 4OIPA 4Y52C 4WFBS 1FEUA 1VHYA 4LK0A 1EUYA 4JK1A 4G7OA 2KXYA 1O0BA 1ZYRA 3GTJC 2ZJRS 3PIOS 1O0CA 3S14C 4BXXC 1R9TC 4A3EC 4OIQA 3S1QC 4A3DC 5IYCC 4KN7A 2JA7C 1SFOC 3S16C 4OIRA 4JYZA 4U67S 3GTKC 4IOAS
chains in the Genus database with same CATH topology
1DFUP 4WFNS 5BNZA 4UY88 3W2WB 2RE8A 5JVHS 3AIIA 1B75A 5GADW 1QRUA 1QRSA 5IZNA 4WFAS 3DLLS 4H4KA 4IOCS 4IO9S 1UDXA 5DM6S 5HL7S 1EXDA 5GAHW 2RD2A 1EUQA 4H3SA 3CF5S 4WFBS 1FEUA 1NYLA 5GAEW 1ZJWA 1EUYA 1GTRA 2ZJPS 5JVGS 4WCES 1O0BA 2HZ7A 4WF9S 3PIPS 2ZJRS 3J7ZV 3PIOS 1O0CA 3W2VB 3X1LB 1GTSA 4JXZA 4P2BA 2ZJQS 4JXXA 1QTQA 4V194 4JYZA 5DM7S 5GAGW 1D6KA 4U67S 1QRTA 4IOAS
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DFU P;  4WFN S;  5BNZ A;  4UY8 8;  2RE8 A;  5JVH S;  3AII A;  1B75 A;  5GAD W;  1QRU A;  1QRS A;  5IZN A;  4WFA S;  3DLL S;  4IOC S;  4IO9 S;  5DM6 S;  5HL7 S;  1EXD A;  5GAH W;  2RD2 A;  1EUQ A;  4H3S A;  3CF5 S;  4WFB S;  1FEU A;  1NYL A;  5GAE W;  1ZJW A;  1EUY A;  1GTR A;  2ZJP S;  5JVG S;  4WCE S;  1O0B A;  2HZ7 A;  4WF9 S;  3PIP S;  2ZJR S;  3J7Z V;  3PIO S;  1O0C A;  4JXZ A;  1GTS A;  4P2B A;  2ZJQ S;  4JXX A;  1QTQ A;  4JYZ A;  5DM7 S;  5GAG W;  1D6K A;  4U67 S;  1QRT A;  4IOA S; 
#chains in the Genus database with same CATH topology
 4WFN S;  1TWG C;  2NWA A;  2WAQ D;  3HOU C;  5JVH S;  1V6Z A;  5TMC A;  2NVT C;  4C2M C;  3GTG C;  4A3K C;  3S15 C;  4KN4 A;  1I6V A;  2KQ1 A;  2CX8 A;  3H3V D;  3HOY C;  5HL7 S;  1YNN A;  2RD2 A;  4H3S A;  3CF5 S;  4YFN A;  4C3H C;  3GTO C;  3WOD A;  1HQM A;  3DXJ A;  3S2H C;  2ZJP S;  5C3E C;  5IP7 C;  5JVG S;  2KPU A;  4BY1 C;  4WCE S;  4A3I C;  4KMU A;  4WF9 S;  4XSX A;  2PIC A;  4XLP A;  4A3J C;  2R7Z C;  3RZO C;  2L5N A;  4QJV A;  5C4J C;  4A3B C;  4MQ9 A;  2WB1 D;  2ZJQ S;  4BBR C;  1QTQ A;  2PI8 A;  4UY8 8;  1VHK A;  1D6K A;  4QIW D;  2NVX C;  4OIN A;  4XLN A;  3HOZ C;  2VUM C;  3GTP C;  3KW2 A;  2A68 A;  2R93 C;  3HOW C;  3I4M C;  1Z85 A;  2AE0 X;  3S1R C;  4A3L C;  3GTQ C;  2EGV A;  3M3Y C;  5IYB C;  2E2J C;  1WCM C;  3DLL S;  1Y1V C;  4IO9 S;  2G6G A;  2PPB A;  1UDX A;  1YNJ A;  4C3J C;  3PO3 C;  3HOX C;  3S1M C;  2NVY C;  3S17 C;  5GAE W;  1ZJW A;  2Z0Y A;  2PA8 D;  3I4N C;  3K7A C;  4A3G C;  2BE5 A;  3CQZ C;  2HZ7 A;  1BDF A;  4LLG A;  4G7H A;  3J7Z V;  3EQL A;  3CZB A;  3GTM C;  4L69 A;  2NVQ C;  2B63 C;  4A3M C;  1TWC C;  2E2I C;  2G5D A;  2YU9 C;  5FLM C;  4JXX A;  3FKI C;  3LYW A;  4V19 4;  5GAG W;  4MEX A;  1QRT A;  2GAE A;  5TMF A;  1DFU P;  1Y1W C;  5BNZ A;  4YG2 A;  3AII A;  4XSZ A;  5GAD W;  1QRU A;  2O5I A;  3HOV C;  4J3C A;  5IYD C;  2EGW A;  3H0G C;  2PNW A;  1QRS A;  4YFX A;  1K83 C;  1I6H C;  3GTL C;  3M4O C;  5DM6 S;  4G7Z A;  4YFK A;  1EXD A;  4NOI A;  5GAH W;  5C44 C;  1EUQ A;  1SMY A;  1NYL A;  1NXZ A;  4AYB D;  1GTR A;  4LK1 A;  1IW7 A;  5HQH A;  1TWH C;  3RZD C;  4GZY A;  3HKZ D;  2L3U A;  2CW0 A;  4A3F C;  4Q5S A;  3PIP S;  3X1L B;  4JXZ A;  3W2V B;  2A69 A;  4E8B A;  1GTS A;  4A3C C;  2O5J A;  2PJJ A;  3S1N C;  4A93 C;  4BBS C;  4P2B A;  4X6A C;  3PO2 C;  2A6E A;  1TWF C;  1I50 C;  4ZH4 A;  2JA5 C;  5DM7 S;  5D4D A;  4Q4Z A;  1I3Q C;  2E2H C;  2PMZ D;  4LJZ A;  3W2W B;  2RE8 A;  2R92 C;  4C3I C;  1B75 A;  4BY7 C;  3S2D C;  5C4X C;  4MEY A;  4Y7N C;  2JA6 C;  5IZN A;  2Y0S D;  4WFA S;  4H4K A;  4IOC S;  2A6H A;  4OIO A;  2JA8 C;  1TWA C;  5IP9 C;  4OIP A;  4Y52 C;  4WFB S;  1FEU A;  1VHY A;  4LK0 A;  1EUY A;  4JK1 A;  4G7O A;  2KXY A;  1O0B A;  1ZYR A;  3GTJ C;  2ZJR S;  3PIO S;  1O0C A;  3S14 C;  4BXX C;  1R9T C;  4A3E C;  4OIQ A;  3S1Q C;  4A3D C;  5IYC C;  4KN7 A;  2JA7 C;  1SFO C;  3S16 C;  4OIR A;  4JYZ A;  4U67 S;  3GTK C;  4IOA S; 
#chains in the Genus database with same CATH homology
 1DFU P;  4WFN S;  5BNZ A;  4UY8 8;  3W2W B;  2RE8 A;  5JVH S;  3AII A;  1B75 A;  5GAD W;  1QRU A;  1QRS A;  5IZN A;  4WFA S;  3DLL S;  4H4K A;  4IOC S;  4IO9 S;  1UDX A;  5DM6 S;  5HL7 S;  1EXD A;  5GAH W;  2RD2 A;  1EUQ A;  4H3S A;  3CF5 S;  4WFB S;  1FEU A;  1NYL A;  5GAE W;  1ZJW A;  1EUY A;  1GTR A;  2ZJP S;  5JVG S;  4WCE S;  1O0B A;  2HZ7 A;  4WF9 S;  3PIP S;  2ZJR S;  3J7Z V;  3PIO S;  1O0C A;  3W2V B;  3X1L B;  1GTS A;  4JXZ A;  4P2B A;  2ZJQ S;  4JXX A;  1QTQ A;  4V19 4;  4JYZ A;  5DM7 S;  5GAG W;  1D6K A;  4U67 S;  1QRT A;  4IOA S; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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