4WF9S

The crystal structure of the large ribosomal subunit of staphylococcus aureus in complex with telithromycin
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
167
structure length
167
Chain Sequence
b'SLKSIIRQGKQTRSDLKQLRKSGKVPAVVYGYGTKNVSVKVDEVEFIKVIREVGRNGVIELGVGSKTIKVMVADYQFDPLKNQITHIDFLAINMSEERTVEVPVQLVGEAVGAKEGGVVEQPLFNLEVTATPDNIPEAIEVDITELNINDSLTVADVKVTGDFKIEN'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 23S ribosomal RNA
publication title Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus.
pubmed doi rcsb
molecule tags Ribosome
total genus 24
structure length 167
sequence length 167
ec nomenclature
pdb deposition date 2014-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF01386 Ribosomal_L25p Ribosomal L25p family
S PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 4wf9S01
2.170.120.20 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 Ribosomal protein L25, beta domain 4wf9S02
2ZJRS 1DFUP 1O0BA 3DLLS 2ZJPS 4JYZA 4WFAS 5JVHS 2RD2A 5GAHW 3J7ZV 4WCES 1QRTA 1QRUA 4WFBS 1ZJWA 1QTQA 4H3SA 4WF9S 2ZJQS 1EUQA 4JXXA 5GAEW 5JVGS 4P2BA 1GTSA 4IOCS 2HZ7A 1NYLA 1O0CA 1B75A 3CF5S 1EXDA 5GADW 5BNZA 4UY88 1EUYA 4JXZA 5DM7S 1FEUA 4IOAS 5HL7S 2RE8A 1D6KA 5DM6S 4IO9S 5IZNA 3AIIA 3PIPS 4U67S 1GTRA 1QRSA 4WFNS 3PIOS 5GAGW
chains in the Genus database with same CATH superfamily
2ZJRS 2PI8A 4A3MC 4BY1C 4JYZA 4MQ9A 4QJVA 4YFKA 2E2IC 5IYCC 1QTQA 3H0GC 1TWHC 4OIPA 4H3SA 3HKZD 2PA8D 4YG2A 3HOWC 2KPUA 2E2HC 5C44C 4XSZA 4A3BC 4G7ZA 3W2VB 4BBSC 2PJJA 3S1NC 2A69A 3GTJC 1O0CA 3HOXC 2JA5C 3HOUC 1Y1VC 4Q5SA 4OIQA 1ZYRA 4JXZA 1I50C 3LYWA 4A3JC 1IW7A 2NVYC 3HOZC 2WB1D 4IOAS 3S14C 4BY7C 3W2WB 3KW2A 1GTRA 4A3KC 1TWGC 4X6AC 1O0BA 3DLLS 2E2JC 1Z85A 5IYDC 4YFXA 4WFAS 4A3EC 5JVHS 1V6ZA 1YNJA 2KQ1A 5C3EC 3X1LB 3HOYC 3J7ZV 1QRTA 2O5JA 4WF9S 2JA7C 3S17C 2R93C 4L69A 1UDXA 5GAEW 4JXXA 3DXJA 4OINA 2EGVA 1GTSA 3RZOC 5IP9C 1NYLA 2L5NA 2NWAA 4C3JC 3CF5S 1I3QC 1EXDA 4ZH4A 4BBRC 2A6EA 5BNZA 2Y0SD 1I6VA 4MEXA 4XSXA 4NOIA 2G5DA 2PNWA 5C4JC 4KN7A 3M3YC 4OIOA 4E8BA 2NVTC 3S1MC 3EQLA 3GTPC 4A3GC 1YNNA 1D6KA 3S16C 1TWFC 4KN4A 3AIIA 3PIPS 1BDFA 4A3CC 4WFNS 3K7AC 3GTGC 4V194 1DFUP 5FLMC 2JA8C 5HQHA 4AYBD 2B63C 1NXZA 2ZJPS 4YFNA 4Y7NC 3GTLC 4A3DC 4A3LC 4A3FC 2RD2A 2BE5A 1I6HC 2O5IA 2L3UA 5IP7C 4WFBS 2GAEA 3GTKC 3GTQC 4GZYA 2EGWA 2ZJQS 4LK1A 1EUQA 3WODA 3H3VD 5JVGS 4Y52C 4IOCS 2HZ7A 2A68A 2PPBA 3S2DC 1B75A 4QIWD 4LLGA 3RZDC 4BXXC 4G7OA 1Y1WC 2WAQD 4LJZA 4A93C 5HL7S 4J3CA 4MEYA 3I4NC 3I4MC 2CX8A 2Z0YA 3S15C 2A6HA 2KXYA 4KMUA 4H4KA 3S1QC 5IZNA 4G7HA 3CQZC 4U67S 1TWCC 5C4XC 4A3IC 3PIOS 1SMYA 5GAGW 2PMZD 2CW0A 4C3IC 1HQMA 3S1RC 2YU9C 3FKIC 3CZBA 3HOVC 5GAHW 2NVXC 4C3HC 2G6GA 4WCES 2JA6C 1VHYA 1K83C 3GTOC 1QRUA 1ZJWA 3GTMC 3S2HC 4XLNA 5TMFA 4C2MC 2R92C 4P2BA 4LK0A 5IYBC 1WCMC 5GADW 4UY88 1EUYA 2R7ZC 5DM7S 2PICA 5D4DA 1FEUA 4XLPA 3M4OC 2AE0X 2RE8A 4Q4ZA 1R9TC 2NVQC 4JK1A 1SFOC 4OIRA 1VHKA 5DM6S 4IO9S 1TWAC 5TMCA 1QRSA 2VUMC 3PO3C 3PO2C
chains in the Genus database with same CATH topology
2ZJRS 1DFUP 1O0BA 3DLLS 2ZJPS 4JYZA 4V194 4WFAS 5JVHS 2RD2A 5GAHW 3X1LB 3J7ZV 4WCES 1QRTA 1QRUA 4WFBS 1ZJWA 1QTQA 4H3SA 4WF9S 2ZJQS 1EUQA 4JXXA 1UDXA 5GAEW 3W2VB 5JVGS 4P2BA 1GTSA 4IOCS 2HZ7A 1NYLA 1O0CA 1B75A 3CF5S 1EXDA 5GADW 5BNZA 4UY88 1EUYA 4JXZA 5DM7S 1FEUA 4IOAS 5HL7S 2RE8A 3W2WB 1D6KA 4H4KA 5DM6S 5IZNA 3AIIA 3PIPS 4U67S 4IO9S 1GTRA 1QRSA 4WFNS 3PIOS 5GAGW
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZJR S;  1DFU P;  1O0B A;  3DLL S;  2ZJP S;  4JYZ A;  4WFA S;  5JVH S;  2RD2 A;  5GAH W;  3J7Z V;  4WCE S;  1QRT A;  1QRU A;  4WFB S;  1ZJW A;  1QTQ A;  4H3S A;  4WF9 S;  2ZJQ S;  1EUQ A;  4JXX A;  5GAE W;  5JVG S;  4P2B A;  1GTS A;  4IOC S;  2HZ7 A;  1NYL A;  1O0C A;  1B75 A;  3CF5 S;  1EXD A;  5GAD W;  5BNZ A;  4UY8 8;  1EUY A;  4JXZ A;  5DM7 S;  1FEU A;  4IOA S;  5HL7 S;  2RE8 A;  1D6K A;  5DM6 S;  4IO9 S;  5IZN A;  3AII A;  3PIP S;  4U67 S;  1GTR A;  1QRS A;  4WFN S;  3PIO S;  5GAG W; 
#chains in the Genus database with same CATH topology
 2ZJR S;  2PI8 A;  4A3M C;  4BY1 C;  4JYZ A;  4MQ9 A;  4QJV A;  4YFK A;  2E2I C;  5IYC C;  1QTQ A;  3H0G C;  1TWH C;  4OIP A;  4H3S A;  3HKZ D;  2PA8 D;  4YG2 A;  3HOW C;  2KPU A;  2E2H C;  5C44 C;  4XSZ A;  4A3B C;  4G7Z A;  3W2V B;  4BBS C;  2PJJ A;  3S1N C;  2A69 A;  3GTJ C;  1O0C A;  3HOX C;  2JA5 C;  3HOU C;  1Y1V C;  4Q5S A;  4OIQ A;  1ZYR A;  4JXZ A;  1I50 C;  3LYW A;  4A3J C;  1IW7 A;  2NVY C;  3HOZ C;  2WB1 D;  4IOA S;  3S14 C;  4BY7 C;  3W2W B;  3KW2 A;  1GTR A;  4A3K C;  1TWG C;  4X6A C;  1O0B A;  3DLL S;  2E2J C;  1Z85 A;  5IYD C;  4YFX A;  4WFA S;  4A3E C;  5JVH S;  1V6Z A;  1YNJ A;  2KQ1 A;  5C3E C;  3X1L B;  3HOY C;  3J7Z V;  1QRT A;  2O5J A;  4WF9 S;  2JA7 C;  3S17 C;  2R93 C;  4L69 A;  1UDX A;  5GAE W;  4JXX A;  3DXJ A;  4OIN A;  2EGV A;  1GTS A;  3RZO C;  5IP9 C;  1NYL A;  2L5N A;  2NWA A;  4C3J C;  3CF5 S;  1I3Q C;  1EXD A;  4ZH4 A;  4BBR C;  2A6E A;  5BNZ A;  2Y0S D;  1I6V A;  4MEX A;  4XSX A;  4NOI A;  2G5D A;  2PNW A;  5C4J C;  4KN7 A;  3M3Y C;  4OIO A;  4E8B A;  2NVT C;  3S1M C;  3EQL A;  3GTP C;  4A3G C;  1YNN A;  1D6K A;  3S16 C;  1TWF C;  4KN4 A;  3AII A;  3PIP S;  1BDF A;  4A3C C;  4WFN S;  3K7A C;  3GTG C;  4V19 4;  1DFU P;  5FLM C;  2JA8 C;  5HQH A;  4AYB D;  2B63 C;  1NXZ A;  2ZJP S;  4YFN A;  4Y7N C;  3GTL C;  4A3D C;  4A3L C;  4A3F C;  2RD2 A;  2BE5 A;  1I6H C;  2O5I A;  2L3U A;  5IP7 C;  4WFB S;  2GAE A;  3GTK C;  3GTQ C;  4GZY A;  2EGW A;  2ZJQ S;  4LK1 A;  1EUQ A;  3WOD A;  3H3V D;  5JVG S;  4Y52 C;  4IOC S;  2HZ7 A;  2A68 A;  2PPB A;  3S2D C;  1B75 A;  4QIW D;  4LLG A;  3RZD C;  4BXX C;  4G7O A;  1Y1W C;  2WAQ D;  4LJZ A;  4A93 C;  5HL7 S;  4J3C A;  4MEY A;  3I4N C;  3I4M C;  2CX8 A;  2Z0Y A;  3S15 C;  2A6H A;  2KXY A;  4KMU A;  4H4K A;  3S1Q C;  5IZN A;  4G7H A;  3CQZ C;  4U67 S;  1TWC C;  5C4X C;  4A3I C;  3PIO S;  1SMY A;  5GAG W;  2PMZ D;  2CW0 A;  4C3I C;  1HQM A;  3S1R C;  2YU9 C;  3FKI C;  3CZB A;  3HOV C;  5GAH W;  2NVX C;  4C3H C;  2G6G A;  4WCE S;  2JA6 C;  1VHY A;  1K83 C;  3GTO C;  1QRU A;  1ZJW A;  3GTM C;  3S2H C;  4XLN A;  5TMF A;  4C2M C;  2R92 C;  4P2B A;  4LK0 A;  5IYB C;  1WCM C;  5GAD W;  4UY8 8;  1EUY A;  2R7Z C;  5DM7 S;  2PIC A;  5D4D A;  1FEU A;  4XLP A;  3M4O C;  2AE0 X;  2RE8 A;  4Q4Z A;  1R9T C;  2NVQ C;  4JK1 A;  1SFO C;  4OIR A;  1VHK A;  5DM6 S;  4IO9 S;  1TWA C;  5TMC A;  1QRS A;  2VUM C;  3PO3 C;  3PO2 C; 
#chains in the Genus database with same CATH homology
 2ZJR S;  1DFU P;  1O0B A;  3DLL S;  2ZJP S;  4JYZ A;  4V19 4;  4WFA S;  5JVH S;  2RD2 A;  5GAH W;  3X1L B;  3J7Z V;  4WCE S;  1QRT A;  1QRU A;  4WFB S;  1ZJW A;  1QTQ A;  4H3S A;  4WF9 S;  2ZJQ S;  1EUQ A;  4JXX A;  1UDX A;  5GAE W;  3W2V B;  5JVG S;  4P2B A;  1GTS A;  4IOC S;  2HZ7 A;  1NYL A;  1O0C A;  1B75 A;  3CF5 S;  1EXD A;  5GAD W;  5BNZ A;  4UY8 8;  1EUY A;  4JXZ A;  5DM7 S;  1FEU A;  4IOA S;  5HL7 S;  2RE8 A;  3W2W B;  1D6K A;  4H4K A;  5DM6 S;  5IZN A;  3AII A;  3PIP S;  4U67 S;  4IO9 S;  1GTR A;  1QRS A;  4WFN S;  3PIO S;  5GAG W; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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