4WF9S

The crystal structure of the large ribosomal subunit of staphylococcus aureus in complex with telithromycin
Total Genus 24
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
167
structure length
167
Chain Sequence
SLKSIIRQGKQTRSDLKQLRKSGKVPAVVYGYGTKNVSVKVDEVEFIKVIREVGRNGVIELGVGSKTIKVMVADYQFDPLKNQITHIDFLAINMSEERTVEVPVQLVGEAVGAKEGGVVEQPLFNLEVTATPDNIPEAIEVDITELNINDSLTVADVKVTGDFKIEN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords 23S ribosomal RNA
publication title Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus.
pubmed doi rcsb
molecule tags Ribosome
total genus 24
structure length 167
sequence length 167
ec nomenclature
pdb deposition date 2014-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF01386 Ribosomal_L25p Ribosomal L25p family
S PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 4wf9S01
2.170.120.20 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 Ribosomal protein L25, beta domain 4wf9S02
4UY88 4IO9S 1EXDA 1NYLA 3PIPS 5GAEW 2ZJPS 4JXXA 4WFNS 5IZNA 5GADW 5JVHS 5BNZA 2RE8A 1DFUP 1O0BA 1D6KA 1EUQA 3J7ZV 2ZJQS 4WCES 1QTQA 3DLLS 4IOAS 2ZJRS 4WFAS 1ZJWA 1QRTA 5GAHW 5HL7S 1FEUA 1GTSA 4WF9S 4JXZA 4U67S 2HZ7A 4JYZA 5GAGW 4WFBS 1QRSA 3AIIA 1O0CA 3PIOS 3CF5S 1B75A 4H3SA 5JVGS 2RD2A 1QRUA 4P2BA 1EUYA 5DM7S 5DM6S 1GTRA 4IOCS
chains in the Genus database with same CATH superfamily
5IP9C 3LYWA 4UY88 2JA6C 2WB1D 4J3CA 2JA5C 3GTPC 3GTQC 2NVXC 2CW0A 4MEXA 3CZBA 2PJJA 2A6EA 4G7ZA 5GADW 2PPBA 1DFUP 3X1LB 1ZYRA 1Z85A 4XLNA 3HOWC 1O0BA 3PO3C 3KW2A 3S1MC 2PMZD 1EUQA 2KPUA 2VUMC 4WCES 4C3JC 3DLLS 5C4XC 4KN4A 4BXXC 3FKIC 1ZJWA 2E2JC 3GTGC 4A3DC 3S2DC 1FEUA 3HOUC 3S17C 4WF9S 3HOZC 4JXZA 2EGWA 2HZ7A 2R93C 1SMYA 5IYDC 3S14C 5GAGW 4WFBS 1QRSA 1YNJA 1O0CA 2E2IC 2O5JA 3W2VB 1B75A 4A3IC 1HQMA 5DM6S 1UDXA 4A3EC 4A3FC 1BDFA 4A3LC 1I50C 3S16C 3GTMC 4X6AC 4KMUA 4C3IC 1EXDA 2NVTC 1NYLA 4LLGA 3PIPS 4A3BC 2WAQD 4JXXA 2JA8C 1VHKA 3M4OC 2A68A 2PICA 2YU9C 4Q4ZA 4A3GC 1SFOC 1D6KA 3CQZC 4A3KC 2L5NA 4V194 3GTKC 2NWAA 4H4KA 4OINA 4WFAS 3S2HC 2Y0SD 4A3JC 4LK1A 5GAHW 3WODA 4LK0A 3RZDC 2O5IA 3HOYC 1GTSA 4KN7A 4BBRC 4A3CC 4Y7NC 4G7OA 2R92C 4QJVA 3AIIA 1TWCC 5C44C 4XSZA 4MEYA 4OIOA 1QRUA 4P2BA 1EUYA 3M3YC 1R9TC 4GZYA 2G6GA 4BBSC 3PO2C 1TWHC 3RZOC 3I4NC 4XLPA 4IO9S 4JK1A 1K83C 4NOIA 5C3EC 1YNNA 4XSXA 2ZJPS 1I6VA 4WFNS 2A6HA 5IP7C 2B63C 5JVHS 5BNZA 2PNWA 3S15C 1WCMC 1VHYA 1IW7A 3J7ZV 1TWGC 3H0GC 2BE5A 3HKZD 2ZJQS 4C2MC 4Y52C 4IOAS 4QIWD 3S1QC 2ZJRS 3S1RC 2NVYC 1QRTA 1TWAC 1TWFC 4G7HA 4Q5SA 4ZH4A 2KQ1A 5D4DA 4OIRA 4YG2A 3HOXC 1V6ZA 4AYBD 3PIOS 3CF5S 5C4JC 2G5DA 3EQLA 2KXYA 4IOCS 4BY1C 2CX8A 5TMFA 4C3HC 2L3UA 5FLMC 5GAEW 5IYBC 4L69A 1I3QC 5TMCA 5IZNA 3GTLC 2EGVA 3HOVC 2RE8A 4YFKA 3W2WB 1NXZA 3I4MC 1I6HC 3GTJC 4A93C 4E8BA 3DXJA 1QTQA 5HQHA 4YFNA 2PA8D 3S1NC 4YFXA 4MQ9A 5HL7S 2R7ZC 2PI8A 3K7AC 2E2HC 4U67S 4JYZA 2AE0X 5IYCC 2Z0YA 1Y1WC 4A3MC 4OIPA 4BY7C 2GAEA 4OIQA 4LJZA 2JA7C 4H3SA 5JVGS 2RD2A 3GTOC 5DM7S 1GTRA 3H3VD 2A69A 1Y1VC 2NVQC
chains in the Genus database with same CATH topology
4UY88 4IO9S 1EXDA 1NYLA 3PIPS 5GAEW 2ZJPS 4JXXA 4WFNS 5IZNA 5GADW 5JVHS 5BNZA 2RE8A 3X1LB 1DFUP 1O0BA 3W2WB 1D6KA 1EUQA 3J7ZV 2ZJQS 4WCES 4V194 3DLLS 4H4KA 1QTQA 4IOAS 2ZJRS 4WFAS 1ZJWA 1QRTA 5GAHW 5HL7S 1FEUA 1GTSA 4WF9S 4JXZA 4U67S 5DM6S 2HZ7A 4JYZA 5GAGW 4WFBS 1QRSA 3AIIA 1O0CA 3PIOS 3W2VB 3CF5S 1B75A 4H3SA 5JVGS 2RD2A 1QRUA 4P2BA 1EUYA 5DM7S 1UDXA 1GTRA 4IOCS
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UY8 8;  4IO9 S;  1EXD A;  1NYL A;  3PIP S;  5GAE W;  2ZJP S;  4JXX A;  4WFN S;  5IZN A;  5GAD W;  5JVH S;  5BNZ A;  2RE8 A;  1DFU P;  1O0B A;  1D6K A;  1EUQ A;  3J7Z V;  2ZJQ S;  4WCE S;  1QTQ A;  3DLL S;  4IOA S;  2ZJR S;  4WFA S;  1ZJW A;  1QRT A;  5GAH W;  5HL7 S;  1FEU A;  1GTS A;  4WF9 S;  4JXZ A;  4U67 S;  2HZ7 A;  4JYZ A;  5GAG W;  4WFB S;  1QRS A;  3AII A;  1O0C A;  3PIO S;  3CF5 S;  1B75 A;  4H3S A;  5JVG S;  2RD2 A;  1QRU A;  4P2B A;  1EUY A;  5DM7 S;  5DM6 S;  1GTR A;  4IOC S; 
#chains in the Genus database with same CATH topology
 5IP9 C;  3LYW A;  4UY8 8;  2JA6 C;  2WB1 D;  4J3C A;  2JA5 C;  3GTP C;  3GTQ C;  2NVX C;  2CW0 A;  4MEX A;  3CZB A;  2PJJ A;  2A6E A;  4G7Z A;  5GAD W;  2PPB A;  1DFU P;  3X1L B;  1ZYR A;  1Z85 A;  4XLN A;  3HOW C;  1O0B A;  3PO3 C;  3KW2 A;  3S1M C;  2PMZ D;  1EUQ A;  2KPU A;  2VUM C;  4WCE S;  4C3J C;  3DLL S;  5C4X C;  4KN4 A;  4BXX C;  3FKI C;  1ZJW A;  2E2J C;  3GTG C;  4A3D C;  3S2D C;  1FEU A;  3HOU C;  3S17 C;  4WF9 S;  3HOZ C;  4JXZ A;  2EGW A;  2HZ7 A;  2R93 C;  1SMY A;  5IYD C;  3S14 C;  5GAG W;  4WFB S;  1QRS A;  1YNJ A;  1O0C A;  2E2I C;  2O5J A;  3W2V B;  1B75 A;  4A3I C;  1HQM A;  5DM6 S;  1UDX A;  4A3E C;  4A3F C;  1BDF A;  4A3L C;  1I50 C;  3S16 C;  3GTM C;  4X6A C;  4KMU A;  4C3I C;  1EXD A;  2NVT C;  1NYL A;  4LLG A;  3PIP S;  4A3B C;  2WAQ D;  4JXX A;  2JA8 C;  1VHK A;  3M4O C;  2A68 A;  2PIC A;  2YU9 C;  4Q4Z A;  4A3G C;  1SFO C;  1D6K A;  3CQZ C;  4A3K C;  2L5N A;  4V19 4;  3GTK C;  2NWA A;  4H4K A;  4OIN A;  4WFA S;  3S2H C;  2Y0S D;  4A3J C;  4LK1 A;  5GAH W;  3WOD A;  4LK0 A;  3RZD C;  2O5I A;  3HOY C;  1GTS A;  4KN7 A;  4BBR C;  4A3C C;  4Y7N C;  4G7O A;  2R92 C;  4QJV A;  3AII A;  1TWC C;  5C44 C;  4XSZ A;  4MEY A;  4OIO A;  1QRU A;  4P2B A;  1EUY A;  3M3Y C;  1R9T C;  4GZY A;  2G6G A;  4BBS C;  3PO2 C;  1TWH C;  3RZO C;  3I4N C;  4XLP A;  4IO9 S;  4JK1 A;  1K83 C;  4NOI A;  5C3E C;  1YNN A;  4XSX A;  2ZJP S;  1I6V A;  4WFN S;  2A6H A;  5IP7 C;  2B63 C;  5JVH S;  5BNZ A;  2PNW A;  3S15 C;  1WCM C;  1VHY A;  1IW7 A;  3J7Z V;  1TWG C;  3H0G C;  2BE5 A;  3HKZ D;  2ZJQ S;  4C2M C;  4Y52 C;  4IOA S;  4QIW D;  3S1Q C;  2ZJR S;  3S1R C;  2NVY C;  1QRT A;  1TWA C;  1TWF C;  4G7H A;  4Q5S A;  4ZH4 A;  2KQ1 A;  5D4D A;  4OIR A;  4YG2 A;  3HOX C;  1V6Z A;  4AYB D;  3PIO S;  3CF5 S;  5C4J C;  2G5D A;  3EQL A;  2KXY A;  4IOC S;  4BY1 C;  2CX8 A;  5TMF A;  4C3H C;  2L3U A;  5FLM C;  5GAE W;  5IYB C;  4L69 A;  1I3Q C;  5TMC A;  5IZN A;  3GTL C;  2EGV A;  3HOV C;  2RE8 A;  4YFK A;  3W2W B;  1NXZ A;  3I4M C;  1I6H C;  3GTJ C;  4A93 C;  4E8B A;  3DXJ A;  1QTQ A;  5HQH A;  4YFN A;  2PA8 D;  3S1N C;  4YFX A;  4MQ9 A;  5HL7 S;  2R7Z C;  2PI8 A;  3K7A C;  2E2H C;  4U67 S;  4JYZ A;  2AE0 X;  5IYC C;  2Z0Y A;  1Y1W C;  4A3M C;  4OIP A;  4BY7 C;  2GAE A;  4OIQ A;  4LJZ A;  2JA7 C;  4H3S A;  5JVG S;  2RD2 A;  3GTO C;  5DM7 S;  1GTR A;  3H3V D;  2A69 A;  1Y1V C;  2NVQ C; 
#chains in the Genus database with same CATH homology
 4UY8 8;  4IO9 S;  1EXD A;  1NYL A;  3PIP S;  5GAE W;  2ZJP S;  4JXX A;  4WFN S;  5IZN A;  5GAD W;  5JVH S;  5BNZ A;  2RE8 A;  3X1L B;  1DFU P;  1O0B A;  3W2W B;  1D6K A;  1EUQ A;  3J7Z V;  2ZJQ S;  4WCE S;  4V19 4;  3DLL S;  4H4K A;  1QTQ A;  4IOA S;  2ZJR S;  4WFA S;  1ZJW A;  1QRT A;  5GAH W;  5HL7 S;  1FEU A;  1GTS A;  4WF9 S;  4JXZ A;  4U67 S;  5DM6 S;  2HZ7 A;  4JYZ A;  5GAG W;  4WFB S;  1QRS A;  3AII A;  1O0C A;  3PIO S;  3W2V B;  3CF5 S;  1B75 A;  4H3S A;  5JVG S;  2RD2 A;  1QRU A;  4P2B A;  1EUY A;  5DM7 S;  1UDX A;  1GTR A;  4IOC S; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...