5GAHW

Rnc in complex with srp with detached ng domain
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
94
structure length
94
Chain Sequence
MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords SRP 4.5S RNA
total genus 23
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2015-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF01386 Ribosomal_L25p Ribosomal L25p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 5gahW00
1QRUA 1FEUA 5DM7S 3CF5S 2ZJPS 4UY88 2RD2A 5HL7S 4IO9S 1QRTA 1QTQA 4JXZA 1O0CA 1GTRA 1EXDA 5GAEW 1ZJWA 3PIPS 1GTSA 2ZJQS 1D6KA 4WFNS 5BNZA 5GAHW 5JVHS 4IOCS 4WF9S 4P2BA 1DFUP 2HZ7A 5GADW 4H3SA 5JVGS 3AIIA 2RE8A 1O0BA 1B75A 3J7ZV 2ZJRS 5IZNA 4WFBS 3DLLS 4JXXA 4U67S 4WCES 4IOAS 1QRSA 1NYLA 5DM6S 1EUQA 4JYZA 3PIOS 4WFAS 1EUYA 5GAGW
chains in the Genus database with same CATH superfamily
1QRUA 4WFAS 2GAEA 1FEUA 5DM7S 4H4KA 2PI8A 3CF5S 2PICA 2ZJPS 4UY88 2RD2A 5HL7S 4IO9S 2NWAA 2Z0YA 1QRTA 1O0CA 1GTRA 1EXDA 1QTQA 5GAEW 4JXZA 1ZJWA 3PIPS 1GTSA 2ZJQS 2PNWA 4V194 2CX8A 4WFNS 1D6KA 5BNZA 1VHYA 5GAHW 1UDXA 3W2WB 5JVHS 4IOCS 4WF9S 4P2BA 3X1LB 3W2VB 2G5DA 1DFUP 2HZ7A 5GADW 1NXZA 3KW2A 4H3SA 5JVGS 3AIIA 2RE8A 1O0BA 1B75A 2EGWA 3J7ZV 2ZJRS 2AE0X 5IZNA 4WFBS 1V6ZA 4L69A 3DLLS 4JXXA 4E8BA 4U67S 2PJJA 4WCES 4IOAS 1QRSA 1NYLA 4J3CA 5DM6S 3CZBA 2G6GA 1EUQA 4JYZA 3PIOS 2EGVA 1EUYA 5GAGW 1VHKA 1Z85A
chains in the Genus database with same CATH topology
1QRUA 1FEUA 5DM7S 4H4KA 3CF5S 2ZJPS 4UY88 2RD2A 5HL7S 4IO9S 1QRTA 1QTQA 4JXZA 1O0CA 1GTRA 1EXDA 5GAEW 1ZJWA 3PIPS 1GTSA 2ZJQS 4V194 1D6KA 4WFNS 5BNZA 5GAHW 1UDXA 3W2WB 5JVHS 4IOCS 4WF9S 4P2BA 3X1LB 3W2VB 1DFUP 2HZ7A 5GADW 4H3SA 5JVGS 3AIIA 2RE8A 1O0BA 1B75A 3J7ZV 2ZJRS 5IZNA 4WFBS 3DLLS 4JXXA 4U67S 4WCES 4IOAS 1QRSA 1NYLA 5DM6S 1EUQA 4JYZA 3PIOS 4WFAS 1EUYA 5GAGW
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QRU A;  1FEU A;  5DM7 S;  3CF5 S;  2ZJP S;  4UY8 8;  2RD2 A;  5HL7 S;  4IO9 S;  1QRT A;  1QTQ A;  4JXZ A;  1O0C A;  1GTR A;  1EXD A;  5GAE W;  1ZJW A;  3PIP S;  1GTS A;  2ZJQ S;  1D6K A;  4WFN S;  5BNZ A;  5GAH W;  5JVH S;  4IOC S;  4WF9 S;  4P2B A;  1DFU P;  2HZ7 A;  5GAD W;  4H3S A;  5JVG S;  3AII A;  2RE8 A;  1O0B A;  1B75 A;  3J7Z V;  2ZJR S;  5IZN A;  4WFB S;  3DLL S;  4JXX A;  4U67 S;  4WCE S;  4IOA S;  1QRS A;  1NYL A;  5DM6 S;  1EUQ A;  4JYZ A;  3PIO S;  4WFA S;  1EUY A;  5GAG W; 
#chains in the Genus database with same CATH topology
 1QRU A;  4WFA S;  2GAE A;  1FEU A;  5DM7 S;  4H4K A;  2PI8 A;  3CF5 S;  2PIC A;  2ZJP S;  4UY8 8;  2RD2 A;  5HL7 S;  4IO9 S;  2NWA A;  2Z0Y A;  1QRT A;  1O0C A;  1GTR A;  1EXD A;  1QTQ A;  5GAE W;  4JXZ A;  1ZJW A;  3PIP S;  1GTS A;  2ZJQ S;  2PNW A;  4V19 4;  2CX8 A;  4WFN S;  1D6K A;  5BNZ A;  1VHY A;  5GAH W;  1UDX A;  3W2W B;  5JVH S;  4IOC S;  4WF9 S;  4P2B A;  3X1L B;  3W2V B;  2G5D A;  1DFU P;  2HZ7 A;  5GAD W;  1NXZ A;  3KW2 A;  4H3S A;  5JVG S;  3AII A;  2RE8 A;  1O0B A;  1B75 A;  2EGW A;  3J7Z V;  2ZJR S;  2AE0 X;  5IZN A;  4WFB S;  1V6Z A;  4L69 A;  3DLL S;  4JXX A;  4E8B A;  4U67 S;  2PJJ A;  4WCE S;  4IOA S;  1QRS A;  1NYL A;  4J3C A;  5DM6 S;  3CZB A;  2G6G A;  1EUQ A;  4JYZ A;  3PIO S;  2EGV A;  1EUY A;  5GAG W;  1VHK A;  1Z85 A; 
#chains in the Genus database with same CATH homology
 1QRU A;  1FEU A;  5DM7 S;  4H4K A;  3CF5 S;  2ZJP S;  4UY8 8;  2RD2 A;  5HL7 S;  4IO9 S;  1QRT A;  1QTQ A;  4JXZ A;  1O0C A;  1GTR A;  1EXD A;  5GAE W;  1ZJW A;  3PIP S;  1GTS A;  2ZJQ S;  4V19 4;  1D6K A;  4WFN S;  5BNZ A;  5GAH W;  1UDX A;  3W2W B;  5JVH S;  4IOC S;  4WF9 S;  4P2B A;  3X1L B;  3W2V B;  1DFU P;  2HZ7 A;  5GAD W;  4H3S A;  5JVG S;  3AII A;  2RE8 A;  1O0B A;  1B75 A;  3J7Z V;  2ZJR S;  5IZN A;  4WFB S;  3DLL S;  4JXX A;  4U67 S;  4WCE S;  4IOA S;  1QRS A;  1NYL A;  5DM6 S;  1EUQ A;  4JYZ A;  3PIO S;  4WFA S;  1EUY A;  5GAG W; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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