5GAHW

Rnc in complex with srp with detached ng domain
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
94
structure length
94
Chain Sequence
MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
molecule keywords SRP 4.5S RNA
total genus 23
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2015-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF01386 Ribosomal_L25p Ribosomal L25p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 5gahW00
5BNZA 4WFAS 1QRTA 1B75A 5GAHW 2RE8A 1D6KA 4P2BA 5GAEW 3J7ZV 3DLLS 2ZJQS 1O0CA 2RD2A 4IOAS 4JXZA 4H3SA 5JVHS 4IO9S 4WFBS 4IOCS 2HZ7A 2ZJRS 5HL7S 1ZJWA 4JYZA 1O0BA 1QRSA 1QTQA 1FEUA 4U67S 1QRUA 1GTSA 5IZNA 5GAGW 1EUQA 4UY88 3CF5S 1NYLA 5DM7S 1GTRA 3AIIA 4JXXA 4WFNS 2ZJPS 1EXDA 5GADW 3PIPS 4WF9S 3PIOS 4WCES 5JVGS 5DM6S 1DFUP 1EUYA
chains in the Genus database with same CATH superfamily
4E8BA 4P2BA 5GAEW 1O0CA 1NXZA 5HL7S 1ZJWA 1O0BA 2Z0YA 3X1LB 1QRUA 4UY88 3KW2A 4L69A 1NYLA 2G6GA 3AIIA 4JXXA 2ZJPS 2PI8A 5BNZA 1B75A 2ZJQS 2GAEA 3CZBA 4WFBS 4IOCS 2PICA 1FEUA 4U67S 5IZNA 4H4KA 1GTRA 2EGVA 5GADW 3PIPS 4WCES 1DFUP 2AE0X 3W2VB 5GAHW 2RE8A 1D6KA 3J7ZV 4JXZA 4H3SA 2ZJRS 1V6ZA 1QRSA 2PNWA 1GTSA 1EUQA 5GAGW 3CF5S 1Z85A 4V194 4WFAS 1QRTA 3DLLS 2RD2A 4IOAS 2PJJA 5JVHS 4IO9S 2HZ7A 3W2WB 4J3CA 4JYZA 1QTQA 1UDXA 5DM7S 2EGWA 1VHKA 4WFNS 2CX8A 2NWAA 1EXDA 4WF9S 2G5DA 3PIOS 5JVGS 1VHYA 5DM6S 1EUYA
chains in the Genus database with same CATH topology
5BNZA 4WFAS 3W2VB 1QRTA 1B75A 5GAHW 2RE8A 1D6KA 4P2BA 5GAEW 3J7ZV 3DLLS 2ZJQS 1O0CA 2RD2A 4IOAS 4JXZA 4H3SA 5JVHS 4IO9S 4WFBS 4IOCS 2HZ7A 2ZJRS 3W2WB 5HL7S 1ZJWA 4JYZA 1O0BA 1QRSA 1QTQA 3X1LB 4U67S 1QRUA 1FEUA 1UDXA 1GTSA 5IZNA 5GAGW 1EUQA 4UY88 3CF5S 4H4KA 1NYLA 5DM7S 1GTRA 3AIIA 4JXXA 4WFNS 2ZJPS 1EXDA 5GADW 3PIPS 4WF9S 3PIOS 4WCES 5JVGS 5DM6S 4V194 1DFUP 1EUYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5BNZ A;  4WFA S;  1QRT A;  1B75 A;  5GAH W;  2RE8 A;  1D6K A;  4P2B A;  5GAE W;  3J7Z V;  3DLL S;  2ZJQ S;  1O0C A;  2RD2 A;  4IOA S;  4JXZ A;  4H3S A;  5JVH S;  4IO9 S;  4WFB S;  4IOC S;  2HZ7 A;  2ZJR S;  5HL7 S;  1ZJW A;  4JYZ A;  1O0B A;  1QRS A;  1QTQ A;  1FEU A;  4U67 S;  1QRU A;  1GTS A;  5IZN A;  5GAG W;  1EUQ A;  4UY8 8;  3CF5 S;  1NYL A;  5DM7 S;  1GTR A;  3AII A;  4JXX A;  4WFN S;  2ZJP S;  1EXD A;  5GAD W;  3PIP S;  4WF9 S;  3PIO S;  4WCE S;  5JVG S;  5DM6 S;  1DFU P;  1EUY A; 
#chains in the Genus database with same CATH topology
 4E8B A;  4P2B A;  5GAE W;  1O0C A;  1NXZ A;  5HL7 S;  1ZJW A;  1O0B A;  2Z0Y A;  3X1L B;  1QRU A;  4UY8 8;  3KW2 A;  4L69 A;  1NYL A;  2G6G A;  3AII A;  4JXX A;  2ZJP S;  2PI8 A;  5BNZ A;  1B75 A;  2ZJQ S;  2GAE A;  3CZB A;  4WFB S;  4IOC S;  2PIC A;  1FEU A;  4U67 S;  5IZN A;  4H4K A;  1GTR A;  2EGV A;  5GAD W;  3PIP S;  4WCE S;  1DFU P;  2AE0 X;  3W2V B;  5GAH W;  2RE8 A;  1D6K A;  3J7Z V;  4JXZ A;  4H3S A;  2ZJR S;  1V6Z A;  1QRS A;  2PNW A;  1GTS A;  1EUQ A;  5GAG W;  3CF5 S;  1Z85 A;  4V19 4;  4WFA S;  1QRT A;  3DLL S;  2RD2 A;  4IOA S;  2PJJ A;  5JVH S;  4IO9 S;  2HZ7 A;  3W2W B;  4J3C A;  4JYZ A;  1QTQ A;  1UDX A;  5DM7 S;  2EGW A;  1VHK A;  4WFN S;  2CX8 A;  2NWA A;  1EXD A;  4WF9 S;  2G5D A;  3PIO S;  5JVG S;  1VHY A;  5DM6 S;  1EUY A; 
#chains in the Genus database with same CATH homology
 5BNZ A;  4WFA S;  3W2V B;  1QRT A;  1B75 A;  5GAH W;  2RE8 A;  1D6K A;  4P2B A;  5GAE W;  3J7Z V;  3DLL S;  2ZJQ S;  1O0C A;  2RD2 A;  4IOA S;  4JXZ A;  4H3S A;  5JVH S;  4IO9 S;  4WFB S;  4IOC S;  2HZ7 A;  2ZJR S;  3W2W B;  5HL7 S;  1ZJW A;  4JYZ A;  1O0B A;  1QRS A;  1QTQ A;  3X1L B;  4U67 S;  1QRU A;  1FEU A;  1UDX A;  1GTS A;  5IZN A;  5GAG W;  1EUQ A;  4UY8 8;  3CF5 S;  4H4K A;  1NYL A;  5DM7 S;  1GTR A;  3AII A;  4JXX A;  4WFN S;  2ZJP S;  1EXD A;  5GAD W;  3PIP S;  4WF9 S;  3PIO S;  4WCE S;  5JVG S;  5DM6 S;  4V19 4;  1DFU P;  1EUY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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