5GAHW

Rnc in complex with srp with detached ng domain
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
94
structure length
94
Chain Sequence
b'MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords SRP 4.5S RNA
publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
molecule tags Ribosome
total genus 23
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2015-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF01386 Ribosomal_L25p Ribosomal L25p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 5gahW00
5JVHS 5GADW 4WCES 4WFAS 4IOAS 3PIOS 1QRTA 2HZ7A 1GTRA 4U67S 3J7ZV 3PIPS 1B75A 2ZJQS 1O0CA 5BNZA 1EXDA 1O0BA 5HL7S 1EUYA 4WFNS 1NYLA 5IZNA 5GAEW 4JXZA 4UY88 4JXXA 4P2BA 5GAGW 2RE8A 3CF5S 4JYZA 5JVGS 4WFBS 1DFUP 1QTQA 1FEUA 1ZJWA 3DLLS 2ZJRS 4IOCS 1EUQA 5GAHW 4IO9S 1GTSA 1QRUA 5DM6S 2RD2A 2ZJPS 1QRSA 4WF9S 1D6KA 4H3SA 5DM7S 3AIIA
chains in the Genus database with same CATH superfamily
5GADW 4IOAS 3PIOS 1QRTA 3PIPS 1B75A 1NXZA 2ZJQS 4H4KA 1EXDA 5HL7S 1EUYA 4JXZA 1VHYA 4JXXA 2RE8A 3CF5S 3W2VB 2NWAA 3KW2A 4IOCS 1EUQA 4IO9S 1VHKA 2PJJA 4WF9S 4H3SA 2PICA 2G6GA 1GTRA 3J7ZV 2Z0YA 5BNZA 4J3CA 3X1LB 1Z85A 5IZNA 2EGVA 4P2BA 1UDXA 2CX8A 4WFBS 2GAEA 2PI8A 3DLLS 5GAHW 1QRUA 5DM6S 1D6KA 5DM7S 3AIIA 2HZ7A 3CZBA 2G5DA 1O0CA 4E8BA 4V194 1DFUP 1QTQA 1FEUA 1ZJWA 2PNWA 2ZJRS 1GTSA 2RD2A 2ZJPS 4UY88 3W2WB 5JVHS 4WCES 4WFAS 2EGWA 4U67S 1O0BA 1NYLA 4WFNS 5GAEW 4L69A 5GAGW 4JYZA 5JVGS 2AE0X 1QRSA 1V6ZA
chains in the Genus database with same CATH topology
3W2WB 5JVHS 5GADW 4WCES 4WFAS 4IOAS 3PIOS 1QRTA 2HZ7A 1GTRA 4U67S 3J7ZV 3PIPS 1B75A 2ZJQS 1O0CA 5BNZA 4H4KA 1EXDA 3X1LB 1O0BA 5HL7S 1EUYA 4WFNS 1NYLA 5IZNA 5GAEW 4JXZA 4UY88 4JXXA 4P2BA 1UDXA 5GAGW 2RE8A 3CF5S 4JYZA 5JVGS 4V194 4WFBS 1DFUP 1QTQA 3W2VB 1FEUA 1ZJWA 3DLLS 2ZJRS 4IOCS 1EUQA 5GAHW 4IO9S 1GTSA 1QRUA 5DM6S 2RD2A 2ZJPS 1QRSA 4WF9S 1D6KA 4H3SA 5DM7S 3AIIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5JVH S;  5GAD W;  4WCE S;  4WFA S;  4IOA S;  3PIO S;  1QRT A;  2HZ7 A;  1GTR A;  4U67 S;  3J7Z V;  3PIP S;  1B75 A;  2ZJQ S;  1O0C A;  5BNZ A;  1EXD A;  1O0B A;  5HL7 S;  1EUY A;  4WFN S;  1NYL A;  5IZN A;  5GAE W;  4JXZ A;  4UY8 8;  4JXX A;  4P2B A;  5GAG W;  2RE8 A;  3CF5 S;  4JYZ A;  5JVG S;  4WFB S;  1DFU P;  1QTQ A;  1FEU A;  1ZJW A;  3DLL S;  2ZJR S;  4IOC S;  1EUQ A;  5GAH W;  4IO9 S;  1GTS A;  1QRU A;  5DM6 S;  2RD2 A;  2ZJP S;  1QRS A;  4WF9 S;  1D6K A;  4H3S A;  5DM7 S;  3AII A; 
#chains in the Genus database with same CATH topology
 5GAD W;  4IOA S;  3PIO S;  1QRT A;  3PIP S;  1B75 A;  1NXZ A;  2ZJQ S;  4H4K A;  1EXD A;  5HL7 S;  1EUY A;  4JXZ A;  1VHY A;  4JXX A;  2RE8 A;  3CF5 S;  3W2V B;  2NWA A;  3KW2 A;  4IOC S;  1EUQ A;  4IO9 S;  1VHK A;  2PJJ A;  4WF9 S;  4H3S A;  2PIC A;  2G6G A;  1GTR A;  3J7Z V;  2Z0Y A;  5BNZ A;  4J3C A;  3X1L B;  1Z85 A;  5IZN A;  2EGV A;  4P2B A;  1UDX A;  2CX8 A;  4WFB S;  2GAE A;  2PI8 A;  3DLL S;  5GAH W;  1QRU A;  5DM6 S;  1D6K A;  5DM7 S;  3AII A;  2HZ7 A;  3CZB A;  2G5D A;  1O0C A;  4E8B A;  4V19 4;  1DFU P;  1QTQ A;  1FEU A;  1ZJW A;  2PNW A;  2ZJR S;  1GTS A;  2RD2 A;  2ZJP S;  4UY8 8;  3W2W B;  5JVH S;  4WCE S;  4WFA S;  2EGW A;  4U67 S;  1O0B A;  1NYL A;  4WFN S;  5GAE W;  4L69 A;  5GAG W;  4JYZ A;  5JVG S;  2AE0 X;  1QRS A;  1V6Z A; 
#chains in the Genus database with same CATH homology
 3W2W B;  5JVH S;  5GAD W;  4WCE S;  4WFA S;  4IOA S;  3PIO S;  1QRT A;  2HZ7 A;  1GTR A;  4U67 S;  3J7Z V;  3PIP S;  1B75 A;  2ZJQ S;  1O0C A;  5BNZ A;  4H4K A;  1EXD A;  3X1L B;  1O0B A;  5HL7 S;  1EUY A;  4WFN S;  1NYL A;  5IZN A;  5GAE W;  4JXZ A;  4UY8 8;  4JXX A;  4P2B A;  1UDX A;  5GAG W;  2RE8 A;  3CF5 S;  4JYZ A;  5JVG S;  4V19 4;  4WFB S;  1DFU P;  1QTQ A;  3W2V B;  1FEU A;  1ZJW A;  3DLL S;  2ZJR S;  4IOC S;  1EUQ A;  5GAH W;  4IO9 S;  1GTS A;  1QRU A;  5DM6 S;  2RD2 A;  2ZJP S;  1QRS A;  4WF9 S;  1D6K A;  4H3S A;  5DM7 S;  3AII A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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