5GAHW

Rnc in complex with srp with detached ng domain
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
94
structure length
94
Chain Sequence
MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords SRP 4.5S RNA
publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
molecule tags Ribosome
total genus 23
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2015-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF01386 Ribosomal_L25p Ribosomal L25p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 5gahW00
2ZJPS 4UY88 4IOAS 1EUQA 1EUYA 1FEUA 5GAHW 1QRSA 5JVGS 4WF9S 4WFNS 3AIIA 2HZ7A 4JXXA 4P2BA 5GAGW 1GTSA 1B75A 5GADW 4WCES 1EXDA 3CF5S 1O0BA 1NYLA 5DM6S 3J7ZV 1QRTA 2RE8A 2ZJQS 1GTRA 5HL7S 1QTQA 5GAEW 3DLLS 5BNZA 4IO9S 5IZNA 2ZJRS 1ZJWA 5DM7S 1O0CA 1DFUP 3PIOS 4IOCS 4H3SA 2RD2A 4WFAS 4WFBS 3PIPS 4JYZA 1QRUA 4JXZA 1D6KA 5JVHS 4U67S
chains in the Genus database with same CATH superfamily
1EUQA 1EUYA 1VHYA 4WFNS 3AIIA 4JXXA 4P2BA 5GAGW 1GTSA 1B75A 3J7ZV 5IZNA 3PIOS 2EGVA 3KW2A 1FEUA 2PJJA 2NWAA 5JVGS 4WF9S 3X1LB 2HZ7A 3CZBA 1EXDA 5DM6S 2PICA 1VHKA 1UDXA 1QTQA 3DLLS 2PNWA 2GAEA 1O0CA 1DFUP 4H3SA 2RD2A 3W2VB 4WFBS 2G5DA 1QRUA 4UY88 2G6GA 1Z85A 4WCES 3CF5S 1O0BA 2AE0X 2ZJQS 2RE8A 5HL7S 5GAEW 4IO9S 3W2WB 1V6ZA 1NXZA 2Z0YA 4WFAS 4JYZA 2EGWA 4H4KA 1D6KA 4U67S 5GADW 4IOCS 2PI8A 2ZJPS 4IOAS 5GAHW 1QRSA 4E8BA 2CX8A 1QRTA 1NYLA 1GTRA 5BNZA 2ZJRS 4V194 4J3CA 1ZJWA 4L69A 5DM7S 3PIPS 4JXZA 5JVHS
chains in the Genus database with same CATH topology
2ZJPS 4UY88 4IOAS 1EUQA 1EUYA 1FEUA 4U67S 5GAHW 1QRSA 5JVGS 4WF9S 4WFNS 3AIIA 3X1LB 2HZ7A 4JXXA 4P2BA 5GAGW 1GTSA 1B75A 4WCES 1EXDA 3CF5S 1O0BA 1NYLA 5DM6S 3J7ZV 1QRTA 2RE8A 2ZJQS 1GTRA 5HL7S 1QTQA 1UDXA 5GAEW 3DLLS 5BNZA 4IO9S 5IZNA 3W2WB 2ZJRS 4V194 1ZJWA 5DM7S 1O0CA 1DFUP 3PIOS 4IOCS 4H3SA 2RD2A 3W2VB 4WFBS 4WFAS 4H4KA 3PIPS 4JYZA 1QRUA 4JXZA 1D6KA 5JVHS 5GADW
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZJP S;  4UY8 8;  4IOA S;  1EUQ A;  1EUY A;  1FEU A;  5GAH W;  1QRS A;  5JVG S;  4WF9 S;  4WFN S;  3AII A;  2HZ7 A;  4JXX A;  4P2B A;  5GAG W;  1GTS A;  1B75 A;  5GAD W;  4WCE S;  1EXD A;  3CF5 S;  1O0B A;  1NYL A;  5DM6 S;  3J7Z V;  1QRT A;  2RE8 A;  2ZJQ S;  1GTR A;  5HL7 S;  1QTQ A;  5GAE W;  3DLL S;  5BNZ A;  4IO9 S;  5IZN A;  2ZJR S;  1ZJW A;  5DM7 S;  1O0C A;  1DFU P;  3PIO S;  4IOC S;  4H3S A;  2RD2 A;  4WFA S;  4WFB S;  3PIP S;  4JYZ A;  1QRU A;  4JXZ A;  1D6K A;  5JVH S;  4U67 S; 
#chains in the Genus database with same CATH topology
 1EUQ A;  1EUY A;  1VHY A;  4WFN S;  3AII A;  4JXX A;  4P2B A;  5GAG W;  1GTS A;  1B75 A;  3J7Z V;  5IZN A;  3PIO S;  2EGV A;  3KW2 A;  1FEU A;  2PJJ A;  2NWA A;  5JVG S;  4WF9 S;  3X1L B;  2HZ7 A;  3CZB A;  1EXD A;  5DM6 S;  2PIC A;  1VHK A;  1UDX A;  1QTQ A;  3DLL S;  2PNW A;  2GAE A;  1O0C A;  1DFU P;  4H3S A;  2RD2 A;  3W2V B;  4WFB S;  2G5D A;  1QRU A;  4UY8 8;  2G6G A;  1Z85 A;  4WCE S;  3CF5 S;  1O0B A;  2AE0 X;  2ZJQ S;  2RE8 A;  5HL7 S;  5GAE W;  4IO9 S;  3W2W B;  1V6Z A;  1NXZ A;  2Z0Y A;  4WFA S;  4JYZ A;  2EGW A;  4H4K A;  1D6K A;  4U67 S;  5GAD W;  4IOC S;  2PI8 A;  2ZJP S;  4IOA S;  5GAH W;  1QRS A;  4E8B A;  2CX8 A;  1QRT A;  1NYL A;  1GTR A;  5BNZ A;  2ZJR S;  4V19 4;  4J3C A;  1ZJW A;  4L69 A;  5DM7 S;  3PIP S;  4JXZ A;  5JVH S; 
#chains in the Genus database with same CATH homology
 2ZJP S;  4UY8 8;  4IOA S;  1EUQ A;  1EUY A;  1FEU A;  4U67 S;  5GAH W;  1QRS A;  5JVG S;  4WF9 S;  4WFN S;  3AII A;  3X1L B;  2HZ7 A;  4JXX A;  4P2B A;  5GAG W;  1GTS A;  1B75 A;  4WCE S;  1EXD A;  3CF5 S;  1O0B A;  1NYL A;  5DM6 S;  3J7Z V;  1QRT A;  2RE8 A;  2ZJQ S;  1GTR A;  5HL7 S;  1QTQ A;  1UDX A;  5GAE W;  3DLL S;  5BNZ A;  4IO9 S;  5IZN A;  3W2W B;  2ZJR S;  4V19 4;  1ZJW A;  5DM7 S;  1O0C A;  1DFU P;  3PIO S;  4IOC S;  4H3S A;  2RD2 A;  3W2V B;  4WFB S;  4WFA S;  4H4K A;  3PIP S;  4JYZ A;  1QRU A;  4JXZ A;  1D6K A;  5JVH S;  5GAD W; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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