5GAHW

Rnc in complex with srp with detached ng domain
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
94
structure length
94
Chain Sequence
MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords SRP 4.5S RNA
publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
molecule tags Ribosome
total genus 23
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2015-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF01386 Ribosomal_L25p Ribosomal L25p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 5gahW00
5HL7S 4WFNS 5DM6S 4WCES 4JXZA 5BNZA 4JYZA 4H3SA 1GTSA 4JXXA 1GTRA 1ZJWA 4IO9S 3J7ZV 2ZJQS 1EUQA 4P2BA 5DM7S 5GAHW 4WFAS 2RD2A 4IOCS 4WF9S 2ZJRS 1B75A 4WFBS 4IOAS 5GAGW 5JVGS 1QTQA 5JVHS 1DFUP 1O0CA 2ZJPS 3DLLS 1QRTA 3CF5S 1QRSA 4U67S 3PIPS 1O0BA 1EXDA 1FEUA 1QRUA 5IZNA 1D6KA 3PIOS 2HZ7A 4UY88 1NYLA 1EUYA 5GAEW 2RE8A 3AIIA 5GADW
chains in the Genus database with same CATH superfamily
4JXZA 2PICA 4IO9S 5GAHW 4WFAS 2ZJRS 2PJJA 2Z0YA 1UDXA 2PI8A 4V194 2CX8A 2PNWA 1VHKA 3PIOS 5GAEW 1GTRA 4WFNS 5DM6S 4WCES 1VHYA 4E8BA 2RD2A 4H4KA 4IOCS 4WFBS 5GAGW 5JVHS 2G6GA 2AE0X 4U67S 1QRUA 1D6KA 1V6ZA 1NYLA 1EUYA 4L69A 3KW2A 4JYZA 4H3SA 1GTSA 1NXZA 4JXXA 3W2WB 1ZJWA 1EUQA 5DM7S 3CZBA 1B75A 4IOAS 1QTQA 2GAEA 1DFUP 1O0CA 2ZJPS 3DLLS 1QRTA 3PIPS 1FEUA 1Z85A 5IZNA 2NWAA 4UY88 2RE8A 3AIIA 5HL7S 2EGWA 5BNZA 3X1LB 3W2VB 3J7ZV 2ZJQS 4P2BA 4J3CA 2G5DA 4WF9S 5JVGS 2EGVA 3CF5S 1QRSA 1EXDA 1O0BA 2HZ7A 5GADW
chains in the Genus database with same CATH topology
5HL7S 4WFNS 5DM6S 4WCES 4JXZA 3X1LB 5BNZA 4JYZA 4H3SA 3W2VB 1GTSA 4JXXA 3W2WB 1GTRA 1ZJWA 4IO9S 3J7ZV 2ZJQS 1EUQA 4P2BA 5DM7S 5GAHW 4WFAS 2RD2A 4H4KA 4IOCS 2ZJRS 4WF9S 1B75A 4WFBS 4IOAS 5GAGW 5JVGS 1QTQA 5JVHS 1DFUP 1O0CA 1UDXA 2ZJPS 3DLLS 1QRTA 3CF5S 4V194 1QRSA 4U67S 3PIPS 1O0BA 1EXDA 1FEUA 1QRUA 5IZNA 1D6KA 3PIOS 2HZ7A 4UY88 1NYLA 1EUYA 5GAEW 2RE8A 3AIIA 5GADW
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HL7 S;  4WFN S;  5DM6 S;  4WCE S;  4JXZ A;  5BNZ A;  4JYZ A;  4H3S A;  1GTS A;  4JXX A;  1GTR A;  1ZJW A;  4IO9 S;  3J7Z V;  2ZJQ S;  1EUQ A;  4P2B A;  5DM7 S;  5GAH W;  4WFA S;  2RD2 A;  4IOC S;  4WF9 S;  2ZJR S;  1B75 A;  4WFB S;  4IOA S;  5GAG W;  5JVG S;  1QTQ A;  5JVH S;  1DFU P;  1O0C A;  2ZJP S;  3DLL S;  1QRT A;  3CF5 S;  1QRS A;  4U67 S;  3PIP S;  1O0B A;  1EXD A;  1FEU A;  1QRU A;  5IZN A;  1D6K A;  3PIO S;  2HZ7 A;  4UY8 8;  1NYL A;  1EUY A;  5GAE W;  2RE8 A;  3AII A;  5GAD W; 
#chains in the Genus database with same CATH topology
 4JXZ A;  2PIC A;  4IO9 S;  5GAH W;  4WFA S;  2ZJR S;  2PJJ A;  2Z0Y A;  1UDX A;  2PI8 A;  4V19 4;  2CX8 A;  2PNW A;  1VHK A;  3PIO S;  5GAE W;  1GTR A;  4WFN S;  5DM6 S;  4WCE S;  1VHY A;  4E8B A;  2RD2 A;  4H4K A;  4IOC S;  4WFB S;  5GAG W;  5JVH S;  2G6G A;  2AE0 X;  4U67 S;  1QRU A;  1D6K A;  1V6Z A;  1NYL A;  1EUY A;  4L69 A;  3KW2 A;  4JYZ A;  4H3S A;  1GTS A;  1NXZ A;  4JXX A;  3W2W B;  1ZJW A;  1EUQ A;  5DM7 S;  3CZB A;  1B75 A;  4IOA S;  1QTQ A;  2GAE A;  1DFU P;  1O0C A;  2ZJP S;  3DLL S;  1QRT A;  3PIP S;  1FEU A;  1Z85 A;  5IZN A;  2NWA A;  4UY8 8;  2RE8 A;  3AII A;  5HL7 S;  2EGW A;  5BNZ A;  3X1L B;  3W2V B;  3J7Z V;  2ZJQ S;  4P2B A;  4J3C A;  2G5D A;  4WF9 S;  5JVG S;  2EGV A;  3CF5 S;  1QRS A;  1EXD A;  1O0B A;  2HZ7 A;  5GAD W; 
#chains in the Genus database with same CATH homology
 5HL7 S;  4WFN S;  5DM6 S;  4WCE S;  4JXZ A;  3X1L B;  5BNZ A;  4JYZ A;  4H3S A;  3W2V B;  1GTS A;  4JXX A;  3W2W B;  1GTR A;  1ZJW A;  4IO9 S;  3J7Z V;  2ZJQ S;  1EUQ A;  4P2B A;  5DM7 S;  5GAH W;  4WFA S;  2RD2 A;  4H4K A;  4IOC S;  2ZJR S;  4WF9 S;  1B75 A;  4WFB S;  4IOA S;  5GAG W;  5JVG S;  1QTQ A;  5JVH S;  1DFU P;  1O0C A;  1UDX A;  2ZJP S;  3DLL S;  1QRT A;  3CF5 S;  4V19 4;  1QRS A;  4U67 S;  3PIP S;  1O0B A;  1EXD A;  1FEU A;  1QRU A;  5IZN A;  1D6K A;  3PIO S;  2HZ7 A;  4UY8 8;  1NYL A;  1EUY A;  5GAE W;  2RE8 A;  3AII A;  5GAD W; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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