5GAHW

Rnc in complex with srp with detached ng domain
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
94
structure length
94
Chain Sequence
MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords SRP 4.5S RNA
publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
total genus 23
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2015-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF01386 Ribosomal_L25p Ribosomal L25p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 5gahW00
5GAHW 1NYLA 1O0CA 1GTSA 2ZJPS 4UY88 2ZJQS 2RE8A 1QTQA 1B75A 4P2BA 4WFNS 5GADW 1QRSA 5DM7S 1D6KA 4WFAS 3J7ZV 1FEUA 4WFBS 5JVGS 2RD2A 5DM6S 1EXDA 1QRUA 1O0BA 3DLLS 4IO9S 3PIOS 3CF5S 4IOCS 4WCES 1DFUP 5IZNA 4U67S 1QRTA 2HZ7A 3PIPS 1EUYA 5HL7S 1GTRA 2ZJRS 5GAEW 1EUQA 4H3SA 5BNZA 5JVHS 5GAGW 4JXZA 4JXXA 1ZJWA 4JYZA 3AIIA 4IOAS 4WF9S
chains in the Genus database with same CATH superfamily
1O0CA 2ZJPS 1QTQA 2RE8A 1B75A 4P2BA 4WFNS 2CX8A 5DM7S 2PNWA 2EGWA 1FEUA 2NWAA 1QRUA 4H4KA 3PIOS 1DFUP 4U67S 3PIPS 5HL7S 1EUQA 4H3SA 3W2WB 2AE0X 1NYLA 4UY88 1D6KA 3W2VB 4WFAS 2RD2A 4L69A 2G6GA 2PICA 1O0BA 4V194 4IOCS 4WCES 5IZNA 1EUYA 2EGVA 5BNZA 4JXZA 4JYZA 3AIIA 4WF9S 1V6ZA 2Z0YA 1GTSA 2ZJQS 2PJJA 5GADW 1QRSA 3KW2A 4WFBS 1EXDA 1VHKA 4IO9S 3CF5S 1VHYA 2HZ7A 1GTRA 2ZJRS 5GAEW 2GAEA 1UDXA 4IOAS 4E8BA 5GAHW 1NXZA 2G5DA 3J7ZV 1Z85A 2PI8A 5JVGS 5DM6S 3DLLS 3X1LB 1QRTA 4J3CA 5GAGW 5JVHS 4JXXA 1ZJWA 3CZBA
chains in the Genus database with same CATH topology
5GAHW 1NYLA 1O0CA 1GTSA 2ZJPS 4UY88 2ZJQS 2RE8A 1QTQA 1B75A 4P2BA 4WFNS 5GADW 1QRSA 5DM7S 1D6KA 3W2VB 4WFAS 3J7ZV 1FEUA 4WFBS 5JVGS 2RD2A 5DM6S 1EXDA 1QRUA 1O0BA 3DLLS 3X1LB 4H4KA 4IO9S 4V194 3PIOS 3CF5S 4IOCS 4WCES 1DFUP 5IZNA 4U67S 1QRTA 2HZ7A 3PIPS 1EUYA 5HL7S 1GTRA 2ZJRS 5GAEW 1EUQA 4H3SA 5BNZA 5JVHS 5GAGW 4JXZA 3W2WB 4JXXA 1UDXA 1ZJWA 4JYZA 3AIIA 4IOAS 4WF9S
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GAH W;  1NYL A;  1O0C A;  1GTS A;  2ZJP S;  4UY8 8;  2ZJQ S;  2RE8 A;  1QTQ A;  1B75 A;  4P2B A;  4WFN S;  5GAD W;  1QRS A;  5DM7 S;  1D6K A;  4WFA S;  3J7Z V;  1FEU A;  4WFB S;  5JVG S;  2RD2 A;  5DM6 S;  1EXD A;  1QRU A;  1O0B A;  3DLL S;  4IO9 S;  3PIO S;  3CF5 S;  4IOC S;  4WCE S;  1DFU P;  5IZN A;  4U67 S;  1QRT A;  2HZ7 A;  3PIP S;  1EUY A;  5HL7 S;  1GTR A;  2ZJR S;  5GAE W;  1EUQ A;  4H3S A;  5BNZ A;  5JVH S;  5GAG W;  4JXZ A;  4JXX A;  1ZJW A;  4JYZ A;  3AII A;  4IOA S;  4WF9 S; 
#chains in the Genus database with same CATH topology
 1O0C A;  2ZJP S;  1QTQ A;  2RE8 A;  1B75 A;  4P2B A;  4WFN S;  2CX8 A;  5DM7 S;  2PNW A;  2EGW A;  1FEU A;  2NWA A;  1QRU A;  4H4K A;  3PIO S;  1DFU P;  4U67 S;  3PIP S;  5HL7 S;  1EUQ A;  4H3S A;  3W2W B;  2AE0 X;  1NYL A;  4UY8 8;  1D6K A;  3W2V B;  4WFA S;  2RD2 A;  4L69 A;  2G6G A;  2PIC A;  1O0B A;  4V19 4;  4IOC S;  4WCE S;  5IZN A;  1EUY A;  2EGV A;  5BNZ A;  4JXZ A;  4JYZ A;  3AII A;  4WF9 S;  1V6Z A;  2Z0Y A;  1GTS A;  2ZJQ S;  2PJJ A;  5GAD W;  1QRS A;  3KW2 A;  4WFB S;  1EXD A;  1VHK A;  4IO9 S;  3CF5 S;  1VHY A;  2HZ7 A;  1GTR A;  2ZJR S;  5GAE W;  2GAE A;  1UDX A;  4IOA S;  4E8B A;  5GAH W;  1NXZ A;  2G5D A;  3J7Z V;  1Z85 A;  2PI8 A;  5JVG S;  5DM6 S;  3DLL S;  3X1L B;  1QRT A;  4J3C A;  5GAG W;  5JVH S;  4JXX A;  1ZJW A;  3CZB A; 
#chains in the Genus database with same CATH homology
 5GAH W;  1NYL A;  1O0C A;  1GTS A;  2ZJP S;  4UY8 8;  2ZJQ S;  2RE8 A;  1QTQ A;  1B75 A;  4P2B A;  4WFN S;  5GAD W;  1QRS A;  5DM7 S;  1D6K A;  3W2V B;  4WFA S;  3J7Z V;  1FEU A;  4WFB S;  5JVG S;  2RD2 A;  5DM6 S;  1EXD A;  1QRU A;  1O0B A;  3DLL S;  3X1L B;  4H4K A;  4IO9 S;  4V19 4;  3PIO S;  3CF5 S;  4IOC S;  4WCE S;  1DFU P;  5IZN A;  4U67 S;  1QRT A;  2HZ7 A;  3PIP S;  1EUY A;  5HL7 S;  1GTR A;  2ZJR S;  5GAE W;  1EUQ A;  4H3S A;  5BNZ A;  5JVH S;  5GAG W;  4JXZ A;  3W2W B;  4JXX A;  1UDX A;  1ZJW A;  4JYZ A;  3AII A;  4IOA S;  4WF9 S; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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