4UY88

Molecular basis for the ribosome functioning as a l-tryptophan sensor - cryo-em structure of a tnac stalled e.coli ribosome
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
94
structure length
94
Chain Sequence
MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 50S RIBOSOMAL PROTEIN L32
publication title Molecular Basis for the Ribosome Functioning as an L-Tryptophan Sensor.
pubmed doi rcsb
molecule tags Ribosome
total genus 22
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2014-08-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
8 PF01386 Ribosomal_L25p Ribosomal L25p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 4uy8800
2ZJPS 5BNZA 1EUYA 4IO9S 1QTQA 4IOAS 1O0CA 2ZJQS 1QRUA 4IOCS 4WCES 5JVHS 5HL7S 5IZNA 1GTSA 3AIIA 1NYLA 4U67S 4JXXA 1DFUP 3DLLS 5GADW 4WFAS 3J7ZV 5JVGS 3PIPS 4P2BA 1FEUA 2HZ7A 5DM6S 4H3SA 1EXDA 1EUQA 1D6KA 1QRSA 5GAEW 4JXZA 1B75A 4UY88 5GAGW 1QRTA 3PIOS 4WF9S 4WFNS 5DM7S 4WFBS 2RD2A 2ZJRS 4JYZA 1ZJWA 1O0BA 1GTRA 3CF5S 2RE8A 5GAHW
chains in the Genus database with same CATH superfamily
5BNZA 4H4KA 5IZNA 1NYLA 1DFUP 3DLLS 4L69A 5GADW 1Z85A 4WFAS 3J7ZV 4P2BA 4H3SA 1EXDA 5GAEW 4UY88 5GAGW 2AE0X 4J3CA 4WFBS 3W2WB 2Z0YA 1O0BA 1GTRA 4IOCS 1EUYA 4IO9S 1VHKA 1QRUA 2EGWA 2G6GA 3AIIA 1UDXA 4JXXA 2PICA 3PIPS 1FEUA 1EUQA 2CX8A 4V194 1QRTA 3PIOS 4E8BA 3X1LB 4JYZA 2RE8A 5GAHW 1VHYA 1QTQA 2NWAA 4IOAS 3W2VB 4WCES 5HL7S 1GTSA 3CZBA 5JVGS 2PNWA 2HZ7A 1B75A 4JXZA 2G5DA 5DM7S 1V6ZA 3KW2A 1ZJWA 3CF5S 2ZJPS 2PJJA 1O0CA 2ZJQS 5JVHS 1NXZA 4U67S 2PI8A 5DM6S 1D6KA 1QRSA 4WF9S 4WFNS 2GAEA 2RD2A 2ZJRS 2EGVA
chains in the Genus database with same CATH topology
2ZJPS 5BNZA 1EUYA 4IO9S 1QTQA 4IOAS 1O0CA 2ZJQS 3W2VB 1QRUA 4IOCS 4H4KA 4WCES 5JVHS 5HL7S 5IZNA 1GTSA 3AIIA 1NYLA 1UDXA 4U67S 4JXXA 1DFUP 3DLLS 5GADW 4WFAS 3J7ZV 5JVGS 3PIPS 4P2BA 1FEUA 2HZ7A 5DM6S 4H3SA 1EXDA 1EUQA 1D6KA 1QRSA 5GAEW 4JXZA 1B75A 4UY88 5GAGW 4V194 1QRTA 3PIOS 4WF9S 4WFNS 5DM7S 3X1LB 4WFBS 2RD2A 2ZJRS 3W2WB 4JYZA 1ZJWA 1O0BA 1GTRA 3CF5S 2RE8A 5GAHW
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZJP S;  5BNZ A;  1EUY A;  4IO9 S;  1QTQ A;  4IOA S;  1O0C A;  2ZJQ S;  1QRU A;  4IOC S;  4WCE S;  5JVH S;  5HL7 S;  5IZN A;  1GTS A;  3AII A;  1NYL A;  4U67 S;  4JXX A;  1DFU P;  3DLL S;  5GAD W;  4WFA S;  3J7Z V;  5JVG S;  3PIP S;  4P2B A;  1FEU A;  2HZ7 A;  5DM6 S;  4H3S A;  1EXD A;  1EUQ A;  1D6K A;  1QRS A;  5GAE W;  4JXZ A;  1B75 A;  4UY8 8;  5GAG W;  1QRT A;  3PIO S;  4WF9 S;  4WFN S;  5DM7 S;  4WFB S;  2RD2 A;  2ZJR S;  4JYZ A;  1ZJW A;  1O0B A;  1GTR A;  3CF5 S;  2RE8 A;  5GAH W; 
#chains in the Genus database with same CATH topology
 5BNZ A;  4H4K A;  5IZN A;  1NYL A;  1DFU P;  3DLL S;  4L69 A;  5GAD W;  1Z85 A;  4WFA S;  3J7Z V;  4P2B A;  4H3S A;  1EXD A;  5GAE W;  4UY8 8;  5GAG W;  2AE0 X;  4J3C A;  4WFB S;  3W2W B;  2Z0Y A;  1O0B A;  1GTR A;  4IOC S;  1EUY A;  4IO9 S;  1VHK A;  1QRU A;  2EGW A;  2G6G A;  3AII A;  1UDX A;  4JXX A;  2PIC A;  3PIP S;  1FEU A;  1EUQ A;  2CX8 A;  4V19 4;  1QRT A;  3PIO S;  4E8B A;  3X1L B;  4JYZ A;  2RE8 A;  5GAH W;  1VHY A;  1QTQ A;  2NWA A;  4IOA S;  3W2V B;  4WCE S;  5HL7 S;  1GTS A;  3CZB A;  5JVG S;  2PNW A;  2HZ7 A;  1B75 A;  4JXZ A;  2G5D A;  5DM7 S;  1V6Z A;  3KW2 A;  1ZJW A;  3CF5 S;  2ZJP S;  2PJJ A;  1O0C A;  2ZJQ S;  5JVH S;  1NXZ A;  4U67 S;  2PI8 A;  5DM6 S;  1D6K A;  1QRS A;  4WF9 S;  4WFN S;  2GAE A;  2RD2 A;  2ZJR S;  2EGV A; 
#chains in the Genus database with same CATH homology
 2ZJP S;  5BNZ A;  1EUY A;  4IO9 S;  1QTQ A;  4IOA S;  1O0C A;  2ZJQ S;  3W2V B;  1QRU A;  4IOC S;  4H4K A;  4WCE S;  5JVH S;  5HL7 S;  5IZN A;  1GTS A;  3AII A;  1NYL A;  1UDX A;  4U67 S;  4JXX A;  1DFU P;  3DLL S;  5GAD W;  4WFA S;  3J7Z V;  5JVG S;  3PIP S;  4P2B A;  1FEU A;  2HZ7 A;  5DM6 S;  4H3S A;  1EXD A;  1EUQ A;  1D6K A;  1QRS A;  5GAE W;  4JXZ A;  1B75 A;  4UY8 8;  5GAG W;  4V19 4;  1QRT A;  3PIO S;  4WF9 S;  4WFN S;  5DM7 S;  3X1L B;  4WFB S;  2RD2 A;  2ZJR S;  3W2W B;  4JYZ A;  1ZJW A;  1O0B A;  1GTR A;  3CF5 S;  2RE8 A;  5GAH W; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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