4UY88

Molecular basis for the ribosome functioning as a l-tryptophan sensor - cryo-em structure of a tnac stalled e.coli ribosome
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
94
structure length
94
Chain Sequence
MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Molecular Basis for the Ribosome Functioning as an L-Tryptophan Sensor.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 50S RIBOSOMAL PROTEIN L32
total genus 22
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2014-08-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
8 PF01386 Ribosomal_L25p Ribosomal L25p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 4uy8800
4UY88 4P2BA 1O0CA 4U67S 1DFUP 1QRSA 1NYLA 4WFNS 4H3SA 5GAEW 4JYZA 4WFAS 1GTRA 1EUYA 5BNZA 1FEUA 5GADW 3PIOS 1QRUA 1QTQA 4WF9S 5GAGW 2RE8A 1D6KA 3J7ZV 5DM7S 4JXZA 1B75A 2ZJQS 3CF5S 4IO9S 5DM6S 2RD2A 2ZJRS 4JXXA 3DLLS 5JVHS 5HL7S 2ZJPS 1QRTA 4IOAS 4WFBS 5IZNA 1EXDA 3PIPS 5JVGS 1GTSA 1ZJWA 1EUQA 4IOCS 3AIIA 1O0BA 2HZ7A 5GAHW 4WCES
chains in the Genus database with same CATH superfamily
4H4KA 4UY88 2PNWA 2G6GA 1VHYA 4P2BA 3W2WB 4U67S 1NYLA 4WFNS 1O0CA 1QRSA 4H3SA 1DFUP 5GAEW 4JYZA 4WFAS 1GTRA 1EUYA 4L69A 5BNZA 4V194 1FEUA 3W2VB 2EGWA 5GADW 3PIOS 1QRUA 1QTQA 4WF9S 2EGVA 5GAGW 2RE8A 1D6KA 3KW2A 2NWAA 3CZBA 3J7ZV 5DM7S 4JXZA 1B75A 1NXZA 2ZJQS 3CF5S 1VHKA 4IO9S 2GAEA 5DM6S 2G5DA 2RD2A 2AE0X 3X1LB 2PICA 2ZJRS 1UDXA 3DLLS 4JXXA 5JVHS 5HL7S 2ZJPS 2Z0YA 1QRTA 4IOAS 4WFBS 5IZNA 1EXDA 4J3CA 2PI8A 3PIPS 2CX8A 5JVGS 1GTSA 1ZJWA 1EUQA 4IOCS 3AIIA 1O0BA 1V6ZA 2HZ7A 2PJJA 5GAHW 4E8BA 4WCES 1Z85A
chains in the Genus database with same CATH topology
4H4KA 4UY88 4P2BA 1O0CA 4U67S 3W2WB 1QRSA 1NYLA 4WFNS 1DFUP 4H3SA 5GAEW 4JYZA 4WFAS 1GTRA 1EUYA 4V194 5BNZA 1FEUA 3W2VB 5GADW 3PIOS 1QRUA 1QTQA 4WF9S 5GAGW 2RE8A 1D6KA 3J7ZV 5DM7S 4JXZA 1B75A 2ZJQS 3CF5S 4IO9S 5DM6S 2RD2A 3X1LB 2ZJRS 1UDXA 3DLLS 4JXXA 5JVHS 5HL7S 2ZJPS 1QRTA 4IOAS 4WFBS 5IZNA 1EXDA 3PIPS 5JVGS 1GTSA 1ZJWA 1EUQA 4IOCS 3AIIA 1O0BA 2HZ7A 5GAHW 4WCES
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UY8 8;  4P2B A;  1O0C A;  4U67 S;  1DFU P;  1QRS A;  1NYL A;  4WFN S;  4H3S A;  5GAE W;  4JYZ A;  4WFA S;  1GTR A;  1EUY A;  5BNZ A;  1FEU A;  5GAD W;  3PIO S;  1QRU A;  1QTQ A;  4WF9 S;  5GAG W;  2RE8 A;  1D6K A;  3J7Z V;  5DM7 S;  4JXZ A;  1B75 A;  2ZJQ S;  3CF5 S;  4IO9 S;  5DM6 S;  2RD2 A;  2ZJR S;  4JXX A;  3DLL S;  5JVH S;  5HL7 S;  2ZJP S;  1QRT A;  4IOA S;  4WFB S;  5IZN A;  1EXD A;  3PIP S;  5JVG S;  1GTS A;  1ZJW A;  1EUQ A;  4IOC S;  3AII A;  1O0B A;  2HZ7 A;  5GAH W;  4WCE S; 
#chains in the Genus database with same CATH topology
 4H4K A;  4UY8 8;  2PNW A;  2G6G A;  1VHY A;  4P2B A;  3W2W B;  4U67 S;  1NYL A;  4WFN S;  1O0C A;  1QRS A;  4H3S A;  1DFU P;  5GAE W;  4JYZ A;  4WFA S;  1GTR A;  1EUY A;  4L69 A;  5BNZ A;  4V19 4;  1FEU A;  3W2V B;  2EGW A;  5GAD W;  3PIO S;  1QRU A;  1QTQ A;  4WF9 S;  2EGV A;  5GAG W;  2RE8 A;  1D6K A;  3KW2 A;  2NWA A;  3CZB A;  3J7Z V;  5DM7 S;  4JXZ A;  1B75 A;  1NXZ A;  2ZJQ S;  3CF5 S;  1VHK A;  4IO9 S;  2GAE A;  5DM6 S;  2G5D A;  2RD2 A;  2AE0 X;  3X1L B;  2PIC A;  2ZJR S;  1UDX A;  3DLL S;  4JXX A;  5JVH S;  5HL7 S;  2ZJP S;  2Z0Y A;  1QRT A;  4IOA S;  4WFB S;  5IZN A;  1EXD A;  4J3C A;  2PI8 A;  3PIP S;  2CX8 A;  5JVG S;  1GTS A;  1ZJW A;  1EUQ A;  4IOC S;  3AII A;  1O0B A;  1V6Z A;  2HZ7 A;  2PJJ A;  5GAH W;  4E8B A;  4WCE S;  1Z85 A; 
#chains in the Genus database with same CATH homology
 4H4K A;  4UY8 8;  4P2B A;  1O0C A;  4U67 S;  3W2W B;  1QRS A;  1NYL A;  4WFN S;  1DFU P;  4H3S A;  5GAE W;  4JYZ A;  4WFA S;  1GTR A;  1EUY A;  4V19 4;  5BNZ A;  1FEU A;  3W2V B;  5GAD W;  3PIO S;  1QRU A;  1QTQ A;  4WF9 S;  5GAG W;  2RE8 A;  1D6K A;  3J7Z V;  5DM7 S;  4JXZ A;  1B75 A;  2ZJQ S;  3CF5 S;  4IO9 S;  5DM6 S;  2RD2 A;  3X1L B;  2ZJR S;  1UDX A;  3DLL S;  4JXX A;  5JVH S;  5HL7 S;  2ZJP S;  1QRT A;  4IOA S;  4WFB S;  5IZN A;  1EXD A;  3PIP S;  5JVG S;  1GTS A;  1ZJW A;  1EUQ A;  4IOC S;  3AII A;  1O0B A;  2HZ7 A;  5GAH W;  4WCE S; 
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similar chains in the pdb database (?% sequence similarity)

 
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