4UY88

Molecular basis for the ribosome functioning as a l-tryptophan sensor - cryo-em structure of a tnac stalled e.coli ribosome
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
94
structure length
94
Chain Sequence
b'MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 50S RIBOSOMAL PROTEIN L32
molecule tags Ribosome
publication title Molecular Basis for the Ribosome Functioning as an L-Tryptophan Sensor.
pubmed doi rcsb
total genus 22
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2014-08-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
8 PF01386 Ribosomal_L25p Ribosomal L25p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 4uy8800
2RD2A 1O0CA 1EUYA 5IZNA 1QRTA 1DFUP 5BNZA 4WFBS 1ZJWA 5DM6S 1EUQA 1GTRA 3CF5S 1FEUA 1B75A 2ZJRS 3J7ZV 1QRSA 4JXZA 4WCES 4IOCS 1O0BA 3AIIA 2ZJQS 2RE8A 4H3SA 5GAEW 5GADW 3PIPS 4JYZA 1EXDA 4WF9S 1NYLA 5GAGW 4WFNS 4WFAS 4UY88 1D6KA 1QRUA 1GTSA 4JXXA 3PIOS 5JVGS 5HL7S 1QTQA 2ZJPS 5GAHW 2HZ7A 5JVHS 4IO9S 4IOAS 3DLLS 4P2BA 5DM7S 4U67S
chains in the Genus database with same CATH superfamily
2NWAA 2RD2A 3KW2A 3CZBA 1O0CA 5IZNA 1EUYA 1QRTA 1DFUP 5BNZA 4WFBS 1ZJWA 5DM6S 1EUQA 1GTRA 2PNWA 3CF5S 1FEUA 1V6ZA 1B75A 2ZJRS 4J3CA 2EGWA 3J7ZV 4L69A 1QRSA 4WCES 4IOCS 4JXZA 1O0BA 3W2VB 3AIIA 2PI8A 2ZJQS 2RE8A 2AE0X 4H3SA 2EGVA 5GAEW 5GADW 3PIPS 4JYZA 1EXDA 4WF9S 1NYLA 5GAGW 4WFNS 1VHKA 1NXZA 2CX8A 4WFAS 4H4KA 4UY88 1D6KA 2GAEA 1QRUA 1GTSA 1VHYA 4JXXA 3PIOS 5JVGS 5HL7S 1QTQA 2ZJPS 5GAHW 2HZ7A 4E8BA 1UDXA 1Z85A 2Z0YA 5JVHS 4V194 4IO9S 3X1LB 2G5DA 2PICA 3W2WB 3DLLS 4P2BA 2PJJA 2G6GA 5DM7S 4U67S 4IOAS
chains in the Genus database with same CATH topology
2RD2A 1O0CA 1EUYA 5IZNA 1QRTA 1DFUP 5BNZA 4WFBS 1ZJWA 5DM6S 1EUQA 1GTRA 3CF5S 1FEUA 1B75A 2ZJRS 3J7ZV 1QRSA 4JXZA 4WCES 4IOCS 1O0BA 3W2VB 3AIIA 2ZJQS 2RE8A 4H3SA 5GAEW 5GADW 3PIPS 4JYZA 1EXDA 4WF9S 1NYLA 5GAGW 4WFNS 4WFAS 4H4KA 4UY88 1D6KA 1QRUA 1GTSA 4JXXA 3PIOS 5JVGS 5HL7S 1QTQA 2ZJPS 5GAHW 2HZ7A 1UDXA 5JVHS 4V194 4IO9S 3X1LB 4IOAS 3W2WB 3DLLS 4P2BA 5DM7S 4U67S
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RD2 A;  1O0C A;  1EUY A;  5IZN A;  1QRT A;  1DFU P;  5BNZ A;  4WFB S;  1ZJW A;  5DM6 S;  1EUQ A;  1GTR A;  3CF5 S;  1FEU A;  1B75 A;  2ZJR S;  3J7Z V;  1QRS A;  4JXZ A;  4WCE S;  4IOC S;  1O0B A;  3AII A;  2ZJQ S;  2RE8 A;  4H3S A;  5GAE W;  5GAD W;  3PIP S;  4JYZ A;  1EXD A;  4WF9 S;  1NYL A;  5GAG W;  4WFN S;  4WFA S;  4UY8 8;  1D6K A;  1QRU A;  1GTS A;  4JXX A;  3PIO S;  5JVG S;  5HL7 S;  1QTQ A;  2ZJP S;  5GAH W;  2HZ7 A;  5JVH S;  4IO9 S;  4IOA S;  3DLL S;  4P2B A;  5DM7 S;  4U67 S; 
#chains in the Genus database with same CATH topology
 2NWA A;  2RD2 A;  3KW2 A;  3CZB A;  1O0C A;  5IZN A;  1EUY A;  1QRT A;  1DFU P;  5BNZ A;  4WFB S;  1ZJW A;  5DM6 S;  1EUQ A;  1GTR A;  2PNW A;  3CF5 S;  1FEU A;  1V6Z A;  1B75 A;  2ZJR S;  4J3C A;  2EGW A;  3J7Z V;  4L69 A;  1QRS A;  4WCE S;  4IOC S;  4JXZ A;  1O0B A;  3W2V B;  3AII A;  2PI8 A;  2ZJQ S;  2RE8 A;  2AE0 X;  4H3S A;  2EGV A;  5GAE W;  5GAD W;  3PIP S;  4JYZ A;  1EXD A;  4WF9 S;  1NYL A;  5GAG W;  4WFN S;  1VHK A;  1NXZ A;  2CX8 A;  4WFA S;  4H4K A;  4UY8 8;  1D6K A;  2GAE A;  1QRU A;  1GTS A;  1VHY A;  4JXX A;  3PIO S;  5JVG S;  5HL7 S;  1QTQ A;  2ZJP S;  5GAH W;  2HZ7 A;  4E8B A;  1UDX A;  1Z85 A;  2Z0Y A;  5JVH S;  4V19 4;  4IO9 S;  3X1L B;  2G5D A;  2PIC A;  3W2W B;  3DLL S;  4P2B A;  2PJJ A;  2G6G A;  5DM7 S;  4U67 S;  4IOA S; 
#chains in the Genus database with same CATH homology
 2RD2 A;  1O0C A;  1EUY A;  5IZN A;  1QRT A;  1DFU P;  5BNZ A;  4WFB S;  1ZJW A;  5DM6 S;  1EUQ A;  1GTR A;  3CF5 S;  1FEU A;  1B75 A;  2ZJR S;  3J7Z V;  1QRS A;  4JXZ A;  4WCE S;  4IOC S;  1O0B A;  3W2V B;  3AII A;  2ZJQ S;  2RE8 A;  4H3S A;  5GAE W;  5GAD W;  3PIP S;  4JYZ A;  1EXD A;  4WF9 S;  1NYL A;  5GAG W;  4WFN S;  4WFA S;  4H4K A;  4UY8 8;  1D6K A;  1QRU A;  1GTS A;  4JXX A;  3PIO S;  5JVG S;  5HL7 S;  1QTQ A;  2ZJP S;  5GAH W;  2HZ7 A;  1UDX A;  5JVH S;  4V19 4;  4IO9 S;  3X1L B;  4IOA S;  3W2W B;  3DLL S;  4P2B A;  5DM7 S;  4U67 S; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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