4UY88

Molecular basis for the ribosome functioning as a l-tryptophan sensor - cryo-em structure of a tnac stalled e.coli ribosome
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
94
structure length
94
Chain Sequence
MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 50S RIBOSOMAL PROTEIN L32
publication title Molecular Basis for the Ribosome Functioning as an L-Tryptophan Sensor.
pubmed doi rcsb
molecule tags Ribosome
total genus 22
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2014-08-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
8 PF01386 Ribosomal_L25p Ribosomal L25p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 4uy8800
4WCES 4JXZA 1EUYA 1B75A 4H3SA 4WF9S 5GAGW 5GAHW 1O0CA 1EXDA 4IOCS 1FEUA 3PIPS 3J7ZV 1EUQA 5BNZA 5GADW 3AIIA 1ZJWA 4UY88 2RE8A 2ZJQS 1GTRA 3PIOS 5JVHS 4JYZA 5DM7S 5DM6S 4JXXA 4IO9S 5IZNA 1GTSA 1QRTA 1NYLA 1O0BA 1DFUP 4WFAS 4P2BA 2ZJPS 2RD2A 4U67S 2HZ7A 5JVGS 2ZJRS 3CF5S 5GAEW 4WFNS 5HL7S 1QRUA 4IOAS 1QRSA 1QTQA 4WFBS 3DLLS 1D6KA
chains in the Genus database with same CATH superfamily
4WCES 4JXZA 4WF9S 5GAGW 5GAHW 2EGVA 5GADW 4UY88 2PJJA 4H4KA 5IZNA 2RD2A 1QRUA 5JVGS 2G5DA 4WFNS 2ZJRS 1QRSA 2PI8A 2G6GA 4V194 4J3CA 1Z85A 1B75A 4H3SA 1EXDA 4IOCS 2CX8A 1QRTA 2GAEA 4JYZA 4JXXA 1GTSA 1O0BA 3W2VB 4WFAS 1VHYA 1UDXA 2ZJPS 4U67S 3KW2A 3CF5S 5HL7S 2Z0YA 1NXZA 3X1LB 3DLLS 1D6KA 4E8BA 3J7ZV 3W2WB 5BNZA 2EGWA 2NWAA 3PIOS 5DM7S 5DM6S 4IO9S 1DFUP 2PNWA 2HZ7A 1VHKA 1QTQA 4WFBS 1EUYA 1O0CA 2PICA 1FEUA 3PIPS 1EUQA 3AIIA 1ZJWA 1V6ZA 2RE8A 2ZJQS 1GTRA 5JVHS 4L69A 1NYLA 4P2BA 3CZBA 5GAEW 4IOAS 2AE0X
chains in the Genus database with same CATH topology
4WCES 4JXZA 1EUYA 1B75A 4H3SA 4WF9S 5GAGW 5GAHW 1O0CA 1EXDA 4IOCS 1FEUA 3PIPS 3J7ZV 1EUQA 3W2WB 5BNZA 5GADW 3AIIA 1ZJWA 4UY88 2RE8A 2ZJQS 1GTRA 3PIOS 5JVHS 4JYZA 5DM7S 5DM6S 4JXXA 4IO9S 4H4KA 5IZNA 1GTSA 1QRTA 1NYLA 1O0BA 3W2VB 1DFUP 4P2BA 4WFAS 1UDXA 2ZJPS 2RD2A 4U67S 2HZ7A 5JVGS 2ZJRS 3CF5S 5GAEW 4WFNS 5HL7S 1QRUA 4IOAS 1QRSA 1QTQA 4V194 3X1LB 4WFBS 3DLLS 1D6KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WCE S;  4JXZ A;  1EUY A;  1B75 A;  4H3S A;  4WF9 S;  5GAG W;  5GAH W;  1O0C A;  1EXD A;  4IOC S;  1FEU A;  3PIP S;  3J7Z V;  1EUQ A;  5BNZ A;  5GAD W;  3AII A;  1ZJW A;  4UY8 8;  2RE8 A;  2ZJQ S;  1GTR A;  3PIO S;  5JVH S;  4JYZ A;  5DM7 S;  5DM6 S;  4JXX A;  4IO9 S;  5IZN A;  1GTS A;  1QRT A;  1NYL A;  1O0B A;  1DFU P;  4WFA S;  4P2B A;  2ZJP S;  2RD2 A;  4U67 S;  2HZ7 A;  5JVG S;  2ZJR S;  3CF5 S;  5GAE W;  4WFN S;  5HL7 S;  1QRU A;  4IOA S;  1QRS A;  1QTQ A;  4WFB S;  3DLL S;  1D6K A; 
#chains in the Genus database with same CATH topology
 4WCE S;  4JXZ A;  4WF9 S;  5GAG W;  5GAH W;  2EGV A;  5GAD W;  4UY8 8;  2PJJ A;  4H4K A;  5IZN A;  2RD2 A;  1QRU A;  5JVG S;  2G5D A;  4WFN S;  2ZJR S;  1QRS A;  2PI8 A;  2G6G A;  4V19 4;  4J3C A;  1Z85 A;  1B75 A;  4H3S A;  1EXD A;  4IOC S;  2CX8 A;  1QRT A;  2GAE A;  4JYZ A;  4JXX A;  1GTS A;  1O0B A;  3W2V B;  4WFA S;  1VHY A;  1UDX A;  2ZJP S;  4U67 S;  3KW2 A;  3CF5 S;  5HL7 S;  2Z0Y A;  1NXZ A;  3X1L B;  3DLL S;  1D6K A;  4E8B A;  3J7Z V;  3W2W B;  5BNZ A;  2EGW A;  2NWA A;  3PIO S;  5DM7 S;  5DM6 S;  4IO9 S;  1DFU P;  2PNW A;  2HZ7 A;  1VHK A;  1QTQ A;  4WFB S;  1EUY A;  1O0C A;  2PIC A;  1FEU A;  3PIP S;  1EUQ A;  3AII A;  1ZJW A;  1V6Z A;  2RE8 A;  2ZJQ S;  1GTR A;  5JVH S;  4L69 A;  1NYL A;  4P2B A;  3CZB A;  5GAE W;  4IOA S;  2AE0 X; 
#chains in the Genus database with same CATH homology
 4WCE S;  4JXZ A;  1EUY A;  1B75 A;  4H3S A;  4WF9 S;  5GAG W;  5GAH W;  1O0C A;  1EXD A;  4IOC S;  1FEU A;  3PIP S;  3J7Z V;  1EUQ A;  3W2W B;  5BNZ A;  5GAD W;  3AII A;  1ZJW A;  4UY8 8;  2RE8 A;  2ZJQ S;  1GTR A;  3PIO S;  5JVH S;  4JYZ A;  5DM7 S;  5DM6 S;  4JXX A;  4IO9 S;  4H4K A;  5IZN A;  1GTS A;  1QRT A;  1NYL A;  1O0B A;  3W2V B;  1DFU P;  4P2B A;  4WFA S;  1UDX A;  2ZJP S;  2RD2 A;  4U67 S;  2HZ7 A;  5JVG S;  2ZJR S;  3CF5 S;  5GAE W;  4WFN S;  5HL7 S;  1QRU A;  4IOA S;  1QRS A;  1QTQ A;  4V19 4;  3X1L B;  4WFB S;  3DLL S;  1D6K A; 
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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