4V194

Structure of the large subunit of the mammalian mitoribosome, part 1 of 2
Total Genus 4
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
45
structure length
45
Chain Sequence
DCNRALLTRLHRQTYARLYPVLLVKQDGSTIHIRYREPRRMLTMP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
publication title The Complete Structure of the Large Subunit of the Mammalian Mitochondrial Ribosome
pubmed doi rcsb
molecule keywords MITORIBOSOMAL PROTEIN BL27M, MRPL27
total genus 4
structure length 45
sequence length 45
ec nomenclature
pdb deposition date 2014-09-25
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.120 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 4v19400
4V194
chains in the Genus database with same CATH superfamily
5GADW 4WF9S 2PICA 5IZNA 3DLLS 5DM6S 1QTQA 4UY88 4JXXA 5GAHW 2Z0YA 2PNWA 5GAEW 1QRSA 4H4KA 1DFUP 3AIIA 3CZBA 4V194 1B75A 1V6ZA 1Z85A 1UDXA 4WCES 1ZJWA 2EGWA 5HL7S 3X1LB 3CF5S 4P2BA 4WFAS 2HZ7A 1O0BA 1GTSA 4E8BA 4WFBS 1VHKA 3PIPS 5JVHS 3W2VB 4U67S 1NXZA 2ZJQS 2PJJA 1EUQA 4JXZA 1FEUA 4JYZA 2G6GA 2RD2A 2AE0X 5BNZA 1VHYA 2GAEA 2ZJRS 1D6KA 3J7ZV 1QRUA 1NYLA 1EXDA 3PIOS 3KW2A 5GAGW 2PI8A 2RE8A 5JVGS 2CX8A 1O0CA 4L69A 4H3SA 4WFNS 5DM7S 4J3CA 4IOCS 1GTRA 1EUYA 2ZJPS 3W2WB 2NWAA 1QRTA 2EGVA 2G5DA 4IO9S 4IOAS
chains in the Genus database with same CATH topology
3CF5S 5GADW 1NYLA 4P2BA 1QRUA 1QRSA 4WF9S 1EXDA 4WFAS 4H4KA 5IZNA 3PIOS 2HZ7A 1O0BA 1DFUP 1GTSA 5GAGW 2RE8A 3DLLS 3AIIA 5JVGS 4WFBS 5DM6S 3PIPS 5JVHS 1O0CA 4UY88 1QTQA 4JXXA 4H3SA 3W2VB 5GAHW 4V194 4U67S 2ZJQS 4WFNS 1B75A 1EUQA 4JXZA 1FEUA 5DM7S 4JYZA 4IOCS 1GTRA 2RD2A 1UDXA 5GAEW 4WCES 5BNZA 2ZJPS 1EUYA 3X1LB 3W2WB 1ZJWA 1QRTA 2ZJRS 5HL7S 4IO9S 1D6KA 4IOAS 3J7ZV
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4V19 4; 
#chains in the Genus database with same CATH topology
 5GAD W;  4WF9 S;  2PIC A;  5IZN A;  3DLL S;  5DM6 S;  1QTQ A;  4UY8 8;  4JXX A;  5GAH W;  2Z0Y A;  2PNW A;  5GAE W;  1QRS A;  4H4K A;  1DFU P;  3AII A;  3CZB A;  4V19 4;  1B75 A;  1V6Z A;  1Z85 A;  1UDX A;  4WCE S;  1ZJW A;  2EGW A;  5HL7 S;  3X1L B;  3CF5 S;  4P2B A;  4WFA S;  2HZ7 A;  1O0B A;  1GTS A;  4E8B A;  4WFB S;  1VHK A;  3PIP S;  5JVH S;  3W2V B;  4U67 S;  1NXZ A;  2ZJQ S;  2PJJ A;  1EUQ A;  4JXZ A;  1FEU A;  4JYZ A;  2G6G A;  2RD2 A;  2AE0 X;  5BNZ A;  1VHY A;  2GAE A;  2ZJR S;  1D6K A;  3J7Z V;  1QRU A;  1NYL A;  1EXD A;  3PIO S;  3KW2 A;  5GAG W;  2PI8 A;  2RE8 A;  5JVG S;  2CX8 A;  1O0C A;  4L69 A;  4H3S A;  4WFN S;  5DM7 S;  4J3C A;  4IOC S;  1GTR A;  1EUY A;  2ZJP S;  3W2W B;  2NWA A;  1QRT A;  2EGV A;  2G5D A;  4IO9 S;  4IOA S; 
#chains in the Genus database with same CATH homology
 3CF5 S;  5GAD W;  1NYL A;  4P2B A;  1QRU A;  1QRS A;  4WF9 S;  1EXD A;  4WFA S;  4H4K A;  5IZN A;  3PIO S;  2HZ7 A;  1O0B A;  1DFU P;  1GTS A;  5GAG W;  2RE8 A;  3DLL S;  3AII A;  5JVG S;  4WFB S;  5DM6 S;  3PIP S;  5JVH S;  1O0C A;  4UY8 8;  1QTQ A;  4JXX A;  4H3S A;  3W2V B;  5GAH W;  4V19 4;  4U67 S;  2ZJQ S;  4WFN S;  1B75 A;  1EUQ A;  4JXZ A;  1FEU A;  5DM7 S;  4JYZ A;  4IOC S;  1GTR A;  2RD2 A;  1UDX A;  5GAE W;  4WCE S;  5BNZ A;  2ZJP S;  1EUY A;  3X1L B;  3W2W B;  1ZJW A;  1QRT A;  2ZJR S;  5HL7 S;  4IO9 S;  1D6K A;  4IOA S;  3J7Z V; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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