5GAEW

Rnc in complex with a translocating secyeg
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
94
structure length
94
Chain Sequence
MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 23S rRNA
publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
molecule tags Ribosome
total genus 24
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2015-11-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF01386 Ribosomal_L25p Ribosomal L25p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 5gaeW00
5IZNA 1QRUA 5DM6S 1O0CA 1EXDA 5GAHW 4WF9S 1DFUP 1QRTA 4U67S 5JVGS 2ZJPS 1GTSA 5GAEW 4WFAS 3J7ZV 3AIIA 5GADW 2RE8A 4JXXA 1QTQA 5BNZA 4IOCS 1EUQA 1D6KA 5GAGW 1FEUA 1B75A 1GTRA 4P2BA 5DM7S 1O0BA 4UY88 1EUYA 4IOAS 4WFBS 2ZJRS 4IO9S 2HZ7A 3CF5S 1NYLA 3DLLS 2ZJQS 4JYZA 1ZJWA 4H3SA 5JVHS 3PIOS 4WFNS 4JXZA 5HL7S 1QRSA 2RD2A 3PIPS 4WCES
chains in the Genus database with same CATH superfamily
2PI8A 5DM6S 1O0CA 1DFUP 4U67S 2AE0X 5GADW 2RE8A 1FEUA 1D6KA 1O0BA 2HZ7A 1ZJWA 2ZJPS 1GTRA 1QRUA 5GAHW 1QRTA 2G6GA 5GAEW 3J7ZV 4L69A 5BNZA 4IOCS 4P2BA 5DM7S 2PNWA 4IOAS 1EUYA 2CX8A 1VHKA 4E8BA 3CF5S 4J3CA 2ZJQS 4H3SA 5HL7S 1QRSA 2RD2A 1EXDA 2GAEA 1GTSA 1UDXA 3X1LB 3AIIA 4JXXA 1QTQA 5GAGW 4UY88 4H4KA 1Z85A 2PICA 2EGWA 3PIOS 3CZBA 2Z0YA 1V6ZA 3W2WB 4WF9S 4WCES 2G5DA 5IZNA 2PJJA 5JVGS 4WFAS 1VHYA 4V194 1EUQA 1B75A 1NXZA 3W2VB 4WFBS 2ZJRS 3KW2A 4IO9S 4JYZA 1NYLA 2NWAA 3DLLS 5JVHS 4WFNS 4JXZA 2EGVA 3PIPS
chains in the Genus database with same CATH topology
5IZNA 1QRUA 5DM6S 1O0CA 1EXDA 5GAHW 4WF9S 1DFUP 1QRTA 4U67S 5JVGS 2ZJPS 1GTSA 5GAEW 4WFAS 1UDXA 4V194 3X1LB 3J7ZV 3AIIA 5GADW 2RE8A 4JXXA 1QTQA 5BNZA 4IOCS 1EUQA 1D6KA 5GAGW 1FEUA 1B75A 2RD2A 4P2BA 5DM7S 1GTRA 1O0BA 3W2VB 1EUYA 4UY88 4IOAS 4WFBS 4H4KA 2ZJRS 4IO9S 2HZ7A 3CF5S 1NYLA 3DLLS 2ZJQS 4JYZA 1ZJWA 4H3SA 5JVHS 3PIOS 4WFNS 4JXZA 5HL7S 1QRSA 3W2WB 3PIPS 4WCES
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5IZN A;  1QRU A;  5DM6 S;  1O0C A;  1EXD A;  5GAH W;  4WF9 S;  1DFU P;  1QRT A;  4U67 S;  5JVG S;  2ZJP S;  1GTS A;  5GAE W;  4WFA S;  3J7Z V;  3AII A;  5GAD W;  2RE8 A;  4JXX A;  1QTQ A;  5BNZ A;  4IOC S;  1EUQ A;  1D6K A;  5GAG W;  1FEU A;  1B75 A;  1GTR A;  4P2B A;  5DM7 S;  1O0B A;  4UY8 8;  1EUY A;  4IOA S;  4WFB S;  2ZJR S;  4IO9 S;  2HZ7 A;  3CF5 S;  1NYL A;  3DLL S;  2ZJQ S;  4JYZ A;  1ZJW A;  4H3S A;  5JVH S;  3PIO S;  4WFN S;  4JXZ A;  5HL7 S;  1QRS A;  2RD2 A;  3PIP S;  4WCE S; 
#chains in the Genus database with same CATH topology
 2PI8 A;  5DM6 S;  1O0C A;  1DFU P;  4U67 S;  2AE0 X;  5GAD W;  2RE8 A;  1FEU A;  1D6K A;  1O0B A;  2HZ7 A;  1ZJW A;  2ZJP S;  1GTR A;  1QRU A;  5GAH W;  1QRT A;  2G6G A;  5GAE W;  3J7Z V;  4L69 A;  5BNZ A;  4IOC S;  4P2B A;  5DM7 S;  2PNW A;  4IOA S;  1EUY A;  2CX8 A;  1VHK A;  4E8B A;  3CF5 S;  4J3C A;  2ZJQ S;  4H3S A;  5HL7 S;  1QRS A;  2RD2 A;  1EXD A;  2GAE A;  1GTS A;  1UDX A;  3X1L B;  3AII A;  4JXX A;  1QTQ A;  5GAG W;  4UY8 8;  4H4K A;  1Z85 A;  2PIC A;  2EGW A;  3PIO S;  3CZB A;  2Z0Y A;  1V6Z A;  3W2W B;  4WF9 S;  4WCE S;  2G5D A;  5IZN A;  2PJJ A;  5JVG S;  4WFA S;  1VHY A;  4V19 4;  1EUQ A;  1B75 A;  1NXZ A;  3W2V B;  4WFB S;  2ZJR S;  3KW2 A;  4IO9 S;  4JYZ A;  1NYL A;  2NWA A;  3DLL S;  5JVH S;  4WFN S;  4JXZ A;  2EGV A;  3PIP S; 
#chains in the Genus database with same CATH homology
 5IZN A;  1QRU A;  5DM6 S;  1O0C A;  1EXD A;  5GAH W;  4WF9 S;  1DFU P;  1QRT A;  4U67 S;  5JVG S;  2ZJP S;  1GTS A;  5GAE W;  4WFA S;  1UDX A;  4V19 4;  3X1L B;  3J7Z V;  3AII A;  5GAD W;  2RE8 A;  4JXX A;  1QTQ A;  5BNZ A;  4IOC S;  1EUQ A;  1D6K A;  5GAG W;  1FEU A;  1B75 A;  2RD2 A;  4P2B A;  5DM7 S;  1GTR A;  1O0B A;  3W2V B;  1EUY A;  4UY8 8;  4IOA S;  4WFB S;  4H4K A;  2ZJR S;  4IO9 S;  2HZ7 A;  3CF5 S;  1NYL A;  3DLL S;  2ZJQ S;  4JYZ A;  1ZJW A;  4H3S A;  5JVH S;  3PIO S;  4WFN S;  4JXZ A;  5HL7 S;  1QRS A;  3W2W B;  3PIP S;  4WCE S; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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