5GAEW

Rnc in complex with a translocating secyeg
Total Genus 24
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
94
structure length
94
Chain Sequence
MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 23S rRNA
total genus 24
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2015-11-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF01386 Ribosomal_L25p Ribosomal L25p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 5gaeW00
5GAGW 1QRUA 3CF5S 3PIOS 5HL7S 5DM6S 4U67S 1NYLA 4H3SA 3J7ZV 1EUYA 1FEUA 4IOAS 4IOCS 5IZNA 1O0CA 2ZJRS 2ZJQS 2ZJPS 2RD2A 2HZ7A 5BNZA 1O0BA 4WFNS 1QRTA 4UY88 1GTSA 1DFUP 5GAEW 1EUQA 5DM7S 2RE8A 1B75A 1QRSA 4WFAS 4JXXA 4JYZA 4IO9S 5JVHS 4P2BA 5GADW 1GTRA 4WFBS 5JVGS 1D6KA 3PIPS 1ZJWA 3DLLS 1QTQA 4WF9S 1EXDA 5GAHW 4JXZA 3AIIA 4WCES
chains in the Genus database with same CATH superfamily
5GAGW 1QRUA 3CF5S 5HL7S 2G5DA 5DM6S 4U67S 2GAEA 3PIOS 1NXZA 1NYLA 2EGVA 4H3SA 3J7ZV 1EUYA 4IOAS 1UDXA 1FEUA 5GAHW 5IZNA 4IOCS 2PI8A 1O0CA 4H4KA 2EGWA 2ZJRS 2ZJQS 3CZBA 2ZJPS 3W2WB 2HZ7A 5BNZA 2RD2A 1O0BA 4J3CA 2AE0X 4WFNS 1QRTA 4UY88 4V194 1GTSA 1DFUP 4L69A 1VHKA 5GAEW 1EUQA 4E8BA 1Z85A 2PNWA 5DM7S 2RE8A 1VHYA 3X1LB 1B75A 1QRSA 4WFAS 2Z0YA 4JXXA 1GTRA 4JYZA 3W2VB 4IO9S 3KW2A 5JVHS 4P2BA 2PJJA 5GADW 2G6GA 2PICA 4WFBS 1V6ZA 3PIPS 5JVGS 3DLLS 1ZJWA 1D6KA 1EXDA 1QTQA 2CX8A 4JXZA 4WF9S 3AIIA 4WCES 2NWAA
chains in the Genus database with same CATH topology
5GAGW 1QRUA 3CF5S 5HL7S 4U67S 5DM6S 3PIOS 1NYLA 4H3SA 3J7ZV 1EUYA 1FEUA 4IOAS 1UDXA 4IOCS 5IZNA 1O0CA 4H4KA 2ZJRS 2ZJQS 2ZJPS 3W2WB 2HZ7A 5BNZA 2RD2A 1O0BA 4V194 4WFNS 1QRTA 4UY88 1GTSA 1DFUP 5GAEW 1EUQA 3X1LB 5DM7S 2RE8A 1B75A 1QRSA 4WFAS 4JXXA 4JYZA 3W2VB 4IO9S 5JVHS 4P2BA 5GADW 1GTRA 4WFBS 5JVGS 1D6KA 3PIPS 1ZJWA 3DLLS 1QTQA 4WF9S 1EXDA 5GAHW 4JXZA 3AIIA 4WCES
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GAG W;  1QRU A;  3CF5 S;  3PIO S;  5HL7 S;  5DM6 S;  4U67 S;  1NYL A;  4H3S A;  3J7Z V;  1EUY A;  1FEU A;  4IOA S;  4IOC S;  5IZN A;  1O0C A;  2ZJR S;  2ZJQ S;  2ZJP S;  2RD2 A;  2HZ7 A;  5BNZ A;  1O0B A;  4WFN S;  1QRT A;  4UY8 8;  1GTS A;  1DFU P;  5GAE W;  1EUQ A;  5DM7 S;  2RE8 A;  1B75 A;  1QRS A;  4WFA S;  4JXX A;  4JYZ A;  4IO9 S;  5JVH S;  4P2B A;  5GAD W;  1GTR A;  4WFB S;  5JVG S;  1D6K A;  3PIP S;  1ZJW A;  3DLL S;  1QTQ A;  4WF9 S;  1EXD A;  5GAH W;  4JXZ A;  3AII A;  4WCE S; 
#chains in the Genus database with same CATH topology
 5GAG W;  1QRU A;  3CF5 S;  5HL7 S;  2G5D A;  5DM6 S;  4U67 S;  2GAE A;  3PIO S;  1NXZ A;  1NYL A;  2EGV A;  4H3S A;  3J7Z V;  1EUY A;  4IOA S;  1UDX A;  1FEU A;  5GAH W;  5IZN A;  4IOC S;  2PI8 A;  1O0C A;  4H4K A;  2EGW A;  2ZJR S;  2ZJQ S;  3CZB A;  2ZJP S;  3W2W B;  2HZ7 A;  5BNZ A;  2RD2 A;  1O0B A;  4J3C A;  2AE0 X;  4WFN S;  1QRT A;  4UY8 8;  4V19 4;  1GTS A;  1DFU P;  4L69 A;  1VHK A;  5GAE W;  1EUQ A;  4E8B A;  1Z85 A;  2PNW A;  5DM7 S;  2RE8 A;  1VHY A;  3X1L B;  1B75 A;  1QRS A;  4WFA S;  2Z0Y A;  4JXX A;  1GTR A;  4JYZ A;  3W2V B;  4IO9 S;  3KW2 A;  5JVH S;  4P2B A;  2PJJ A;  5GAD W;  2G6G A;  2PIC A;  4WFB S;  1V6Z A;  3PIP S;  5JVG S;  3DLL S;  1ZJW A;  1D6K A;  1EXD A;  1QTQ A;  2CX8 A;  4JXZ A;  4WF9 S;  3AII A;  4WCE S;  2NWA A; 
#chains in the Genus database with same CATH homology
 5GAG W;  1QRU A;  3CF5 S;  5HL7 S;  4U67 S;  5DM6 S;  3PIO S;  1NYL A;  4H3S A;  3J7Z V;  1EUY A;  1FEU A;  4IOA S;  1UDX A;  4IOC S;  5IZN A;  1O0C A;  4H4K A;  2ZJR S;  2ZJQ S;  2ZJP S;  3W2W B;  2HZ7 A;  5BNZ A;  2RD2 A;  1O0B A;  4V19 4;  4WFN S;  1QRT A;  4UY8 8;  1GTS A;  1DFU P;  5GAE W;  1EUQ A;  3X1L B;  5DM7 S;  2RE8 A;  1B75 A;  1QRS A;  4WFA S;  4JXX A;  4JYZ A;  3W2V B;  4IO9 S;  5JVH S;  4P2B A;  5GAD W;  1GTR A;  4WFB S;  5JVG S;  1D6K A;  3PIP S;  1ZJW A;  3DLL S;  1QTQ A;  4WF9 S;  1EXD A;  5GAH W;  4JXZ A;  3AII A;  4WCE S; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...