5GAEW

Rnc in complex with a translocating secyeg
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
94
structure length
94
Chain Sequence
MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 23S rRNA
publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
molecule tags Ribosome
total genus 24
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2015-11-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF01386 Ribosomal_L25p Ribosomal L25p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 5gaeW00
4U67S 4P2BA 4WCES 2ZJPS 3CF5S 4JYZA 1QRSA 3PIPS 1D6KA 1EXDA 4WFBS 1EUYA 5GAEW 5GADW 1O0CA 1DFUP 5JVGS 4H3SA 1ZJWA 4JXZA 5IZNA 4IO9S 4UY88 1QRUA 5BNZA 4IOAS 1FEUA 3DLLS 1O0BA 5HL7S 1QTQA 3PIOS 5DM6S 5GAGW 4JXXA 1EUQA 4WFNS 3AIIA 4IOCS 1NYLA 3J7ZV 1B75A 1QRTA 2ZJQS 2ZJRS 5JVHS 2HZ7A 5GAHW 1GTSA 4WF9S 2RD2A 5DM7S 4WFAS 2RE8A 1GTRA
chains in the Genus database with same CATH superfamily
4WFBS 5GADW 1NXZA 4H3SA 4JXZA 4IO9S 1VHYA 1QTQA 1V6ZA 5DM6S 1EUQA 2AE0X 2G6GA 1B75A 2HZ7A 5GAHW 2ZJRS 5DM7S 4JYZA 1QRSA 3PIPS 2PNWA 3CZBA 3KW2A 1EUYA 2EGVA 1ZJWA 4IOAS 1VHKA 3W2VB 4WFNS 3AIIA 2NWAA 4E8BA 4WF9S 2RE8A 4U67S 3CF5S 4L69A 2GAEA 1D6KA 5GAEW 2Z0YA 5IZNA 1QRUA 2G5DA 3PIOS 3W2WB 5GAGW 2EGWA 4J3CA 4V194 2CX8A 5JVHS 1GTSA 2RD2A 2PJJA 4H4KA 1Z85A 4P2BA 4WCES 2ZJPS 2PICA 1EXDA 2PI8A 1O0CA 1UDXA 1DFUP 5JVGS 4UY88 5BNZA 1FEUA 3DLLS 1O0BA 5HL7S 3X1LB 4JXXA 4IOCS 1NYLA 3J7ZV 1QRTA 2ZJQS 4WFAS 1GTRA
chains in the Genus database with same CATH topology
4U67S 4P2BA 4WCES 2ZJPS 3CF5S 4JYZA 1QRSA 3PIPS 1D6KA 1EXDA 4WFBS 1EUYA 5GAEW 5GADW 1O0CA 1UDXA 1DFUP 5JVGS 4H3SA 1ZJWA 4JXZA 5IZNA 4IO9S 4UY88 1QRUA 5BNZA 4IOAS 1FEUA 3DLLS 1O0BA 5HL7S 3W2VB 3X1LB 1QTQA 3PIOS 3W2WB 5DM6S 5GAGW 4JXXA 1EUQA 4WFNS 3AIIA 4IOCS 1GTRA 1NYLA 3J7ZV 1B75A 1QRTA 2ZJQS 4V194 2ZJRS 5JVHS 2HZ7A 5GAHW 1GTSA 4WF9S 2RD2A 5DM7S 4WFAS 2RE8A 4H4KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4U67 S;  4P2B A;  4WCE S;  2ZJP S;  3CF5 S;  4JYZ A;  1QRS A;  3PIP S;  1D6K A;  1EXD A;  4WFB S;  1EUY A;  5GAE W;  5GAD W;  1O0C A;  1DFU P;  5JVG S;  4H3S A;  1ZJW A;  4JXZ A;  5IZN A;  4IO9 S;  4UY8 8;  1QRU A;  5BNZ A;  4IOA S;  1FEU A;  3DLL S;  1O0B A;  5HL7 S;  1QTQ A;  3PIO S;  5DM6 S;  5GAG W;  4JXX A;  1EUQ A;  4WFN S;  3AII A;  4IOC S;  1NYL A;  3J7Z V;  1B75 A;  1QRT A;  2ZJQ S;  2ZJR S;  5JVH S;  2HZ7 A;  5GAH W;  1GTS A;  4WF9 S;  2RD2 A;  5DM7 S;  4WFA S;  2RE8 A;  1GTR A; 
#chains in the Genus database with same CATH topology
 4WFB S;  5GAD W;  1NXZ A;  4H3S A;  4JXZ A;  4IO9 S;  1VHY A;  1QTQ A;  1V6Z A;  5DM6 S;  1EUQ A;  2AE0 X;  2G6G A;  1B75 A;  2HZ7 A;  5GAH W;  2ZJR S;  5DM7 S;  4JYZ A;  1QRS A;  3PIP S;  2PNW A;  3CZB A;  3KW2 A;  1EUY A;  2EGV A;  1ZJW A;  4IOA S;  1VHK A;  3W2V B;  4WFN S;  3AII A;  2NWA A;  4E8B A;  4WF9 S;  2RE8 A;  4U67 S;  3CF5 S;  4L69 A;  2GAE A;  1D6K A;  5GAE W;  2Z0Y A;  5IZN A;  1QRU A;  2G5D A;  3PIO S;  3W2W B;  5GAG W;  2EGW A;  4J3C A;  4V19 4;  2CX8 A;  5JVH S;  1GTS A;  2RD2 A;  2PJJ A;  4H4K A;  1Z85 A;  4P2B A;  4WCE S;  2ZJP S;  2PIC A;  1EXD A;  2PI8 A;  1O0C A;  1UDX A;  1DFU P;  5JVG S;  4UY8 8;  5BNZ A;  1FEU A;  3DLL S;  1O0B A;  5HL7 S;  3X1L B;  4JXX A;  4IOC S;  1NYL A;  3J7Z V;  1QRT A;  2ZJQ S;  4WFA S;  1GTR A; 
#chains in the Genus database with same CATH homology
 4U67 S;  4P2B A;  4WCE S;  2ZJP S;  3CF5 S;  4JYZ A;  1QRS A;  3PIP S;  1D6K A;  1EXD A;  4WFB S;  1EUY A;  5GAE W;  5GAD W;  1O0C A;  1UDX A;  1DFU P;  5JVG S;  4H3S A;  1ZJW A;  4JXZ A;  5IZN A;  4IO9 S;  4UY8 8;  1QRU A;  5BNZ A;  4IOA S;  1FEU A;  3DLL S;  1O0B A;  5HL7 S;  3W2V B;  3X1L B;  1QTQ A;  3PIO S;  3W2W B;  5DM6 S;  5GAG W;  4JXX A;  1EUQ A;  4WFN S;  3AII A;  4IOC S;  1GTR A;  1NYL A;  3J7Z V;  1B75 A;  1QRT A;  2ZJQ S;  4V19 4;  2ZJR S;  5JVH S;  2HZ7 A;  5GAH W;  1GTS A;  4WF9 S;  2RD2 A;  5DM7 S;  4WFA S;  2RE8 A;  4H4K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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