5GAEW

Rnc in complex with a translocating secyeg
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
94
structure length
94
Chain Sequence
MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S rRNA
publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
total genus 24
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2015-11-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF01386 Ribosomal_L25p Ribosomal L25p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 5gaeW00
5GADW 5JVGS 4U67S 2ZJQS 5IZNA 1QRUA 4WFBS 1QRSA 5GAHW 4H3SA 2RE8A 1QRTA 5HL7S 4WCES 4WF9S 2HZ7A 1O0BA 3CF5S 1D6KA 1EXDA 1GTRA 4JYZA 5DM7S 4WFAS 4IOCS 4JXZA 1GTSA 2ZJRS 4P2BA 3AIIA 5GAGW 3PIPS 2ZJPS 4JXXA 1EUQA 4IOAS 5GAEW 5JVHS 1QTQA 2RD2A 1ZJWA 4WFNS 4IO9S 1NYLA 1FEUA 3DLLS 3PIOS 1O0CA 4UY88 5BNZA 3J7ZV 1B75A 1DFUP 5DM6S 1EUYA
chains in the Genus database with same CATH superfamily
3KW2A 5IZNA 4WFBS 5GAHW 4H3SA 4V194 4H4KA 2PICA 1VHYA 1Z85A 2EGVA 2ZJPS 4IOAS 5GAEW 5JVHS 2RD2A 1FEUA 3W2WB 2NWAA 4E8BA 2PI8A 1NXZA 3CZBA 1UDXA 1QRSA 1QRTA 5HL7S 2AE0X 4WF9S 2HZ7A 3CF5S 1VHKA 4WFAS 4IOCS 4JXZA 5GAGW 4JXXA 4IO9S 1NYLA 4J3CA 1O0CA 1EUYA 2EGWA 2G5DA 5JVGS 4U67S 2ZJQS 2PJJA 4WCES 2Z0YA 2G6GA 3W2VB 2PNWA 4L69A 1EUQA 1QTQA 4WFNS 3PIOS 5BNZA 2GAEA 1DFUP 5DM6S 5GADW 3X1LB 1QRUA 2RE8A 1O0BA 1V6ZA 1D6KA 1EXDA 1GTRA 4JYZA 5DM7S 1GTSA 2ZJRS 4P2BA 3AIIA 3PIPS 2CX8A 1ZJWA 3DLLS 4UY88 3J7ZV 1B75A
chains in the Genus database with same CATH topology
5GADW 3X1LB 5JVGS 4U67S 2ZJQS 5IZNA 1QRUA 4WFBS 1UDXA 1QRSA 5GAHW 4H3SA 2RE8A 1QRTA 5HL7S 4WCES 4V194 4H4KA 4WF9S 2HZ7A 1O0BA 3CF5S 1D6KA 1EXDA 1GTRA 4JYZA 5DM7S 4WFAS 3W2VB 4IOCS 4JXZA 1GTSA 2ZJRS 4P2BA 3AIIA 5GAGW 3PIPS 2ZJPS 4JXXA 1EUQA 4IOAS 5GAEW 5JVHS 1QTQA 2RD2A 1ZJWA 4WFNS 4IO9S 1NYLA 1FEUA 3W2WB 3DLLS 3PIOS 1O0CA 4UY88 5BNZA 3J7ZV 1B75A 1DFUP 5DM6S 1EUYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GAD W;  5JVG S;  4U67 S;  2ZJQ S;  5IZN A;  1QRU A;  4WFB S;  1QRS A;  5GAH W;  4H3S A;  2RE8 A;  1QRT A;  5HL7 S;  4WCE S;  4WF9 S;  2HZ7 A;  1O0B A;  3CF5 S;  1D6K A;  1EXD A;  1GTR A;  4JYZ A;  5DM7 S;  4WFA S;  4IOC S;  4JXZ A;  1GTS A;  2ZJR S;  4P2B A;  3AII A;  5GAG W;  3PIP S;  2ZJP S;  4JXX A;  1EUQ A;  4IOA S;  5GAE W;  5JVH S;  1QTQ A;  2RD2 A;  1ZJW A;  4WFN S;  4IO9 S;  1NYL A;  1FEU A;  3DLL S;  3PIO S;  1O0C A;  4UY8 8;  5BNZ A;  3J7Z V;  1B75 A;  1DFU P;  5DM6 S;  1EUY A; 
#chains in the Genus database with same CATH topology
 3KW2 A;  5IZN A;  4WFB S;  5GAH W;  4H3S A;  4V19 4;  4H4K A;  2PIC A;  1VHY A;  1Z85 A;  2EGV A;  2ZJP S;  4IOA S;  5GAE W;  5JVH S;  2RD2 A;  1FEU A;  3W2W B;  2NWA A;  4E8B A;  2PI8 A;  1NXZ A;  3CZB A;  1UDX A;  1QRS A;  1QRT A;  5HL7 S;  2AE0 X;  4WF9 S;  2HZ7 A;  3CF5 S;  1VHK A;  4WFA S;  4IOC S;  4JXZ A;  5GAG W;  4JXX A;  4IO9 S;  1NYL A;  4J3C A;  1O0C A;  1EUY A;  2EGW A;  2G5D A;  5JVG S;  4U67 S;  2ZJQ S;  2PJJ A;  4WCE S;  2Z0Y A;  2G6G A;  3W2V B;  2PNW A;  4L69 A;  1EUQ A;  1QTQ A;  4WFN S;  3PIO S;  5BNZ A;  2GAE A;  1DFU P;  5DM6 S;  5GAD W;  3X1L B;  1QRU A;  2RE8 A;  1O0B A;  1V6Z A;  1D6K A;  1EXD A;  1GTR A;  4JYZ A;  5DM7 S;  1GTS A;  2ZJR S;  4P2B A;  3AII A;  3PIP S;  2CX8 A;  1ZJW A;  3DLL S;  4UY8 8;  3J7Z V;  1B75 A; 
#chains in the Genus database with same CATH homology
 5GAD W;  3X1L B;  5JVG S;  4U67 S;  2ZJQ S;  5IZN A;  1QRU A;  4WFB S;  1UDX A;  1QRS A;  5GAH W;  4H3S A;  2RE8 A;  1QRT A;  5HL7 S;  4WCE S;  4V19 4;  4H4K A;  4WF9 S;  2HZ7 A;  1O0B A;  3CF5 S;  1D6K A;  1EXD A;  1GTR A;  4JYZ A;  5DM7 S;  4WFA S;  3W2V B;  4IOC S;  4JXZ A;  1GTS A;  2ZJR S;  4P2B A;  3AII A;  5GAG W;  3PIP S;  2ZJP S;  4JXX A;  1EUQ A;  4IOA S;  5GAE W;  5JVH S;  1QTQ A;  2RD2 A;  1ZJW A;  4WFN S;  4IO9 S;  1NYL A;  1FEU A;  3W2W B;  3DLL S;  3PIO S;  1O0C A;  4UY8 8;  5BNZ A;  3J7Z V;  1B75 A;  1DFU P;  5DM6 S;  1EUY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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