5GAEW

Rnc in complex with a translocating secyeg
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
94
structure length
94
Chain Sequence
b'MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 23S rRNA
molecule tags Ribosome
publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
total genus 24
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2015-11-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF01386 Ribosomal_L25p Ribosomal L25p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 5gaeW00
3DLLS 1D6KA 4WFNS 5GAHW 3AIIA 2ZJPS 1EXDA 1FEUA 1B75A 4WFBS 5IZNA 2ZJQS 2ZJRS 5BNZA 1ZJWA 1NYLA 5GADW 4U67S 4JXZA 2RD2A 3PIOS 4P2BA 5GAEW 4IO9S 1QRUA 5GAGW 5HL7S 4JXXA 1GTRA 5JVHS 3PIPS 4WCES 3CF5S 4JYZA 5DM6S 1QRSA 4UY88 3J7ZV 2HZ7A 4IOCS 4WFAS 1GTSA 1DFUP 4IOAS 1EUQA 4WF9S 2RE8A 1EUYA 1QRTA 1O0BA 5JVGS 4H3SA 1O0CA 5DM7S 1QTQA
chains in the Genus database with same CATH superfamily
3DLLS 1D6KA 4WFNS 5GAHW 2PNWA 1V6ZA 2PI8A 3AIIA 2ZJPS 3W2VB 1EXDA 1FEUA 1B75A 5IZNA 4WFBS 2ZJQS 2ZJRS 5BNZA 1ZJWA 1NYLA 2AE0X 1QTQA 1NXZA 4L69A 5GADW 4U67S 4V194 1VHYA 2RD2A 4JXZA 4J3CA 4P2BA 3PIOS 5GAEW 4IO9S 1QRUA 3W2WB 2G5DA 5GAGW 5HL7S 4JXXA 1GTRA 1VHKA 2G6GA 4WCES 3PIPS 2GAEA 5DM6S 3CF5S 5JVHS 1UDXA 2PJJA 4JYZA 4UY88 2Z0YA 3J7ZV 2HZ7A 2PICA 4WFAS 4IOCS 1GTSA 1DFUP 4IOAS 1Z85A 2EGWA 1EUQA 4WF9S 2RE8A 1EUYA 4E8BA 1QRTA 2EGVA 2NWAA 4H4KA 1O0BA 5JVGS 4H3SA 3CZBA 1O0CA 3KW2A 2CX8A 5DM7S 1QRSA 3X1LB
chains in the Genus database with same CATH topology
3DLLS 1D6KA 4WFNS 5GAHW 3AIIA 2ZJPS 3W2VB 1EXDA 1FEUA 1B75A 4WFBS 5IZNA 2ZJQS 2ZJRS 5BNZA 1ZJWA 1NYLA 5GADW 4U67S 4V194 4JXZA 2RD2A 3PIOS 4P2BA 5GAEW 4IO9S 1QRUA 3W2WB 5GAGW 5HL7S 4JXXA 1GTRA 5JVHS 3PIPS 4WCES 3CF5S 4JYZA 5DM6S 1QRSA 1UDXA 4UY88 3J7ZV 2HZ7A 4IOCS 4WFAS 1GTSA 1DFUP 4IOAS 1EUQA 4WF9S 2RE8A 1EUYA 1QRTA 1O0BA 4H4KA 5JVGS 4H3SA 1O0CA 5DM7S 1QTQA 3X1LB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DLL S;  1D6K A;  4WFN S;  5GAH W;  3AII A;  2ZJP S;  1EXD A;  1FEU A;  1B75 A;  4WFB S;  5IZN A;  2ZJQ S;  2ZJR S;  5BNZ A;  1ZJW A;  1NYL A;  5GAD W;  4U67 S;  4JXZ A;  2RD2 A;  3PIO S;  4P2B A;  5GAE W;  4IO9 S;  1QRU A;  5GAG W;  5HL7 S;  4JXX A;  1GTR A;  5JVH S;  3PIP S;  4WCE S;  3CF5 S;  4JYZ A;  5DM6 S;  1QRS A;  4UY8 8;  3J7Z V;  2HZ7 A;  4IOC S;  4WFA S;  1GTS A;  1DFU P;  4IOA S;  1EUQ A;  4WF9 S;  2RE8 A;  1EUY A;  1QRT A;  1O0B A;  5JVG S;  4H3S A;  1O0C A;  5DM7 S;  1QTQ A; 
#chains in the Genus database with same CATH topology
 3DLL S;  1D6K A;  4WFN S;  5GAH W;  2PNW A;  1V6Z A;  2PI8 A;  3AII A;  2ZJP S;  3W2V B;  1EXD A;  1FEU A;  1B75 A;  5IZN A;  4WFB S;  2ZJQ S;  2ZJR S;  5BNZ A;  1ZJW A;  1NYL A;  2AE0 X;  1QTQ A;  1NXZ A;  4L69 A;  5GAD W;  4U67 S;  4V19 4;  1VHY A;  2RD2 A;  4JXZ A;  4J3C A;  4P2B A;  3PIO S;  5GAE W;  4IO9 S;  1QRU A;  3W2W B;  2G5D A;  5GAG W;  5HL7 S;  4JXX A;  1GTR A;  1VHK A;  2G6G A;  4WCE S;  3PIP S;  2GAE A;  5DM6 S;  3CF5 S;  5JVH S;  1UDX A;  2PJJ A;  4JYZ A;  4UY8 8;  2Z0Y A;  3J7Z V;  2HZ7 A;  2PIC A;  4WFA S;  4IOC S;  1GTS A;  1DFU P;  4IOA S;  1Z85 A;  2EGW A;  1EUQ A;  4WF9 S;  2RE8 A;  1EUY A;  4E8B A;  1QRT A;  2EGV A;  2NWA A;  4H4K A;  1O0B A;  5JVG S;  4H3S A;  3CZB A;  1O0C A;  3KW2 A;  2CX8 A;  5DM7 S;  1QRS A;  3X1L B; 
#chains in the Genus database with same CATH homology
 3DLL S;  1D6K A;  4WFN S;  5GAH W;  3AII A;  2ZJP S;  3W2V B;  1EXD A;  1FEU A;  1B75 A;  4WFB S;  5IZN A;  2ZJQ S;  2ZJR S;  5BNZ A;  1ZJW A;  1NYL A;  5GAD W;  4U67 S;  4V19 4;  4JXZ A;  2RD2 A;  3PIO S;  4P2B A;  5GAE W;  4IO9 S;  1QRU A;  3W2W B;  5GAG W;  5HL7 S;  4JXX A;  1GTR A;  5JVH S;  3PIP S;  4WCE S;  3CF5 S;  4JYZ A;  5DM6 S;  1QRS A;  1UDX A;  4UY8 8;  3J7Z V;  2HZ7 A;  4IOC S;  4WFA S;  1GTS A;  1DFU P;  4IOA S;  1EUQ A;  4WF9 S;  2RE8 A;  1EUY A;  1QRT A;  1O0B A;  4H4K A;  5JVG S;  4H3S A;  1O0C A;  5DM7 S;  1QTQ A;  3X1L B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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