2ZJRS

Refined native structure of the large ribosomal subunit (50s) from deinococcus radiodurans
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
175
structure length
175
Chain Sequence
MELTAKPRTPKQKLDESMIAAVAYNKENNVSFALDRKAFDRAFRQQSTTGLFDITVEGGETFPALVKAVQMDKRKRAPIHVDFYMVTYGEPVEVSVPVHTTGRSQGEVQGGLVDIVVHNLQIVAPGPRRIPQELVVDVTKMNIGDHITAGDIKLPEGCTLAADPELTVVSVLPPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
publication title Translational regulation via L11: molecular switches on the ribosome turned on and off by thiostrepton and micrococcin.
pubmed doi rcsb
molecule keywords ribosomal 23S RNA
total genus 19
structure length 175
sequence length 175
ec nomenclature
pdb deposition date 2008-03-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF01386 Ribosomal_L25p Ribosomal L25p family
S PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 2zjrS01
2.170.120.20 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 Ribosomal protein L25, beta domain 2zjrS02
5IZNA 3DLLS 1GTSA 1FEUA 1EXDA 5BNZA 1O0BA 1EUQA 4U67S 1GTRA 1NYLA 1QRTA 1QTQA 5GAHW 1DFUP 4IOAS 2ZJQS 5DM7S 1O0CA 4H3SA 2ZJPS 4JYZA 4IOCS 5GAGW 2RE8A 4UY88 1QRUA 1QRSA 5GAEW 4WFNS 2HZ7A 2ZJRS 5GADW 3PIPS 3PIOS 4WF9S 5JVGS 4P2BA 4JXZA 1D6KA 4JXXA 4WCES 4WFBS 5HL7S 3CF5S 4IO9S 5DM6S 1ZJWA 1B75A 3J7ZV 4WFAS 2RD2A 5JVHS 3AIIA 1EUYA
chains in the Genus database with same CATH superfamily
3HOWC 2Z0YA 4XLNA 2PI8A 1YNJA 4KN7A 4A3LC 5TMFA 5BNZA 1EUQA 3S14C 2E2HC 4U67S 5IP9C 1GTRA 5TMCA 2AE0X 4IOAS 1ZYRA 4GZYA 1TWHC 2PJJA 1YNNA 2JA5C 1K83C 4C3IC 2RE8A 2JA8C 4UY88 2Y0SD 4XSZA 4C2MC 2R7ZC 3X1LB 4MQ9A 4BY1C 2ZJRS 3GTQC 5GADW 3PIPS 4WF9S 2KPUA 2NVXC 5D4DA 4P2BA 2PMZD 4MEXA 2GAEA 4WFBS 5HL7S 4IO9S 1Y1VC 2CW0A 2EGVA 5IP7C 4MEYA 5C3EC 2KQ1A 2PICA 2NWAA 2RD2A 3HKZD 3WODA 4A3EC 3S1NC 1EUYA 3DLLS 3S1MC 4YFXA 1GTSA 3EQLA 3M3YC 5IYDC 5C44C 3S16C 1VHKA 4OIRA 2B63C 3S2HC 2WB1D 1DFUP 5GAHW 4OIPA 3S15C 4A3GC 1VHYA 2ZJQS 2YU9C 4Y52C 4H3SA 4IOCS 5GAGW 4YFNA 2VUMC 1QRUA 1QRSA 4BBRC 2HZ7A 3S17C 4Q4ZA 2A6HA 2R92C 4H4KA 1TWCC 5C4XC 3GTKC 2JA7C 3PO3C 4JXZA 3FKIC 3LYWA 5IYBC 3S1QC 4G7OA 3M4OC 4A3DC 1I6VA 4XSXA 3KW2A 2NVYC 4G7HA 4LJZA 2E2IC 1HQMA 1Y1WC 2G5DA 5HQHA 4LK1A 5FLMC 3RZDC 3HOXC 4A3BC 4KN4A 2A69A 1I6HC 4BY7C 3HOUC 3S2DC 1O0BA 3S1RC 4LLGA 2L5NA 4A3KC 4NOIA 3CZBA 2PPBA 4X6AC 4ZH4A 3W2VB 4KMUA 1BDFA 1UDXA 5DM7S 1O0CA 1R9TC 2ZJPS 2WAQD 4Y7NC 2O5JA 4A3JC 1SFOC 2A68A 3GTLC 5GAEW 3H0GC 2G6GA 4WFNS 3GTMC 1TWGC 2KXYA 1SMYA 3PIOS 3RZOC 4BBSC 2BE5A 2PNWA 4QIWD 4LK0A 1IW7A 4JXXA 4L69A 4WCES 2CX8A 3CF5S 1ZJWA 5DM6S 3K7AC 1B75A 1V6ZA 4YFKA 2A6EA 3H3VD 3J7ZV 2R93C 2EGWA 1I50C 4A3IC 4JYZA 5IZNA 3GTPC 4BXXC 1FEUA 1EXDA 4JK1A 1TWFC 3HOZC 2NVQC 4QJVA 4A3FC 4A93C 4OIQA 4V194 4G7ZA 4A3CC 1QTQA 1NYLA 1QRTA 2L3UA 2JA6C 3I4MC 1WCMC 4OINA 3PO2C 1NXZA 1Z85A 2O5IA 4E8BA 3CQZC 3W2WB 3I4NC 4C3HC 4Q5SA 4AYBD 2PA8D 1TWAC 4XLPA 5JVGS 4A3MC 3HOYC 4YG2A 4OIOA 3GTJC 3GTGC 3GTOC 1D6KA 5C4JC 5IYCC 1I3QC 3DXJA 4J3CA 2E2JC 2NVTC 4WFAS 3HOVC 5JVHS 3AIIA 4C3JC
chains in the Genus database with same CATH topology
5IZNA 3DLLS 1GTSA 1FEUA 1EXDA 5BNZA 1O0BA 1EUQA 4V194 4U67S 1GTRA 1NYLA 1QRTA 1QTQA 5GAHW 1DFUP 4IOAS 3W2VB 2ZJQS 1UDXA 5DM7S 4H3SA 1O0CA 2ZJPS 4JYZA 4IOCS 5GAGW 2RE8A 4UY88 1QRUA 1QRSA 5GAEW 3W2WB 2HZ7A 4WFNS 3X1LB 2ZJRS 5GADW 4H4KA 3PIOS 3PIPS 5JVGS 4WF9S 4P2BA 4JXZA 1D6KA 4JXXA 4WCES 4WFBS 5HL7S 3CF5S 4IO9S 5DM6S 1ZJWA 1B75A 3J7ZV 4WFAS 2RD2A 5JVHS 3AIIA 1EUYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5IZN A;  3DLL S;  1GTS A;  1FEU A;  1EXD A;  5BNZ A;  1O0B A;  1EUQ A;  4U67 S;  1GTR A;  1NYL A;  1QRT A;  1QTQ A;  5GAH W;  1DFU P;  4IOA S;  2ZJQ S;  5DM7 S;  1O0C A;  4H3S A;  2ZJP S;  4JYZ A;  4IOC S;  5GAG W;  2RE8 A;  4UY8 8;  1QRU A;  1QRS A;  5GAE W;  4WFN S;  2HZ7 A;  2ZJR S;  5GAD W;  3PIP S;  3PIO S;  4WF9 S;  5JVG S;  4P2B A;  4JXZ A;  1D6K A;  4JXX A;  4WCE S;  4WFB S;  5HL7 S;  3CF5 S;  4IO9 S;  5DM6 S;  1ZJW A;  1B75 A;  3J7Z V;  4WFA S;  2RD2 A;  5JVH S;  3AII A;  1EUY A; 
#chains in the Genus database with same CATH topology
 3HOW C;  2Z0Y A;  4XLN A;  2PI8 A;  1YNJ A;  4KN7 A;  4A3L C;  5TMF A;  5BNZ A;  1EUQ A;  3S14 C;  2E2H C;  4U67 S;  5IP9 C;  1GTR A;  5TMC A;  2AE0 X;  4IOA S;  1ZYR A;  4GZY A;  1TWH C;  2PJJ A;  1YNN A;  2JA5 C;  1K83 C;  4C3I C;  2RE8 A;  2JA8 C;  4UY8 8;  2Y0S D;  4XSZ A;  4C2M C;  2R7Z C;  3X1L B;  4MQ9 A;  4BY1 C;  2ZJR S;  3GTQ C;  5GAD W;  3PIP S;  4WF9 S;  2KPU A;  2NVX C;  5D4D A;  4P2B A;  2PMZ D;  4MEX A;  2GAE A;  4WFB S;  5HL7 S;  4IO9 S;  1Y1V C;  2CW0 A;  2EGV A;  5IP7 C;  4MEY A;  5C3E C;  2KQ1 A;  2PIC A;  2NWA A;  2RD2 A;  3HKZ D;  3WOD A;  4A3E C;  3S1N C;  1EUY A;  3DLL S;  3S1M C;  4YFX A;  1GTS A;  3EQL A;  3M3Y C;  5IYD C;  5C44 C;  3S16 C;  1VHK A;  4OIR A;  2B63 C;  3S2H C;  2WB1 D;  1DFU P;  5GAH W;  4OIP A;  3S15 C;  4A3G C;  1VHY A;  2ZJQ S;  2YU9 C;  4Y52 C;  4H3S A;  4IOC S;  5GAG W;  4YFN A;  2VUM C;  1QRU A;  1QRS A;  4BBR C;  2HZ7 A;  3S17 C;  4Q4Z A;  2A6H A;  2R92 C;  4H4K A;  1TWC C;  5C4X C;  3GTK C;  2JA7 C;  3PO3 C;  4JXZ A;  3FKI C;  3LYW A;  5IYB C;  3S1Q C;  4G7O A;  3M4O C;  4A3D C;  1I6V A;  4XSX A;  3KW2 A;  2NVY C;  4G7H A;  4LJZ A;  2E2I C;  1HQM A;  1Y1W C;  2G5D A;  5HQH A;  4LK1 A;  5FLM C;  3RZD C;  3HOX C;  4A3B C;  4KN4 A;  2A69 A;  1I6H C;  4BY7 C;  3HOU C;  3S2D C;  1O0B A;  3S1R C;  4LLG A;  2L5N A;  4A3K C;  4NOI A;  3CZB A;  2PPB A;  4X6A C;  4ZH4 A;  3W2V B;  4KMU A;  1BDF A;  1UDX A;  5DM7 S;  1O0C A;  1R9T C;  2ZJP S;  2WAQ D;  4Y7N C;  2O5J A;  4A3J C;  1SFO C;  2A68 A;  3GTL C;  5GAE W;  3H0G C;  2G6G A;  4WFN S;  3GTM C;  1TWG C;  2KXY A;  1SMY A;  3PIO S;  3RZO C;  4BBS C;  2BE5 A;  2PNW A;  4QIW D;  4LK0 A;  1IW7 A;  4JXX A;  4L69 A;  4WCE S;  2CX8 A;  3CF5 S;  1ZJW A;  5DM6 S;  3K7A C;  1B75 A;  1V6Z A;  4YFK A;  2A6E A;  3H3V D;  3J7Z V;  2R93 C;  2EGW A;  1I50 C;  4A3I C;  4JYZ A;  5IZN A;  3GTP C;  4BXX C;  1FEU A;  1EXD A;  4JK1 A;  1TWF C;  3HOZ C;  2NVQ C;  4QJV A;  4A3F C;  4A93 C;  4OIQ A;  4V19 4;  4G7Z A;  4A3C C;  1QTQ A;  1NYL A;  1QRT A;  2L3U A;  2JA6 C;  3I4M C;  1WCM C;  4OIN A;  3PO2 C;  1NXZ A;  1Z85 A;  2O5I A;  4E8B A;  3CQZ C;  3W2W B;  3I4N C;  4C3H C;  4Q5S A;  4AYB D;  2PA8 D;  1TWA C;  4XLP A;  5JVG S;  4A3M C;  3HOY C;  4YG2 A;  4OIO A;  3GTJ C;  3GTG C;  3GTO C;  1D6K A;  5C4J C;  5IYC C;  1I3Q C;  3DXJ A;  4J3C A;  2E2J C;  2NVT C;  4WFA S;  3HOV C;  5JVH S;  3AII A;  4C3J C; 
#chains in the Genus database with same CATH homology
 5IZN A;  3DLL S;  1GTS A;  1FEU A;  1EXD A;  5BNZ A;  1O0B A;  1EUQ A;  4V19 4;  4U67 S;  1GTR A;  1NYL A;  1QRT A;  1QTQ A;  5GAH W;  1DFU P;  4IOA S;  3W2V B;  2ZJQ S;  1UDX A;  5DM7 S;  4H3S A;  1O0C A;  2ZJP S;  4JYZ A;  4IOC S;  5GAG W;  2RE8 A;  4UY8 8;  1QRU A;  1QRS A;  5GAE W;  3W2W B;  2HZ7 A;  4WFN S;  3X1L B;  2ZJR S;  5GAD W;  4H4K A;  3PIO S;  3PIP S;  5JVG S;  4WF9 S;  4P2B A;  4JXZ A;  1D6K A;  4JXX A;  4WCE S;  4WFB S;  5HL7 S;  3CF5 S;  4IO9 S;  5DM6 S;  1ZJW A;  1B75 A;  3J7Z V;  4WFA S;  2RD2 A;  5JVH S;  3AII A;  1EUY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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