2ZJRS

Refined native structure of the large ribosomal subunit (50s) from deinococcus radiodurans
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
175
structure length
175
Chain Sequence
b'MELTAKPRTPKQKLDESMIAAVAYNKENNVSFALDRKAFDRAFRQQSTTGLFDITVEGGETFPALVKAVQMDKRKRAPIHVDFYMVTYGEPVEVSVPVHTTGRSQGEVQGGLVDIVVHNLQIVAPGPRRIPQELVVDVTKMNIGDHITAGDIKLPEGCTLAADPELTVVSVLPPR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Translational regulation via L11: molecular switches on the ribosome turned on and off by thiostrepton and micrococcin.
pubmed doi rcsb
molecule keywords ribosomal 23S RNA
molecule tags Ribosome
total genus 19
structure length 175
sequence length 175
ec nomenclature
pdb deposition date 2008-03-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF01386 Ribosomal_L25p Ribosomal L25p family
S PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 2zjrS01
2.170.120.20 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 Ribosomal protein L25, beta domain 2zjrS02
2ZJPS 5JVHS 1GTSA 1ZJWA 1D6KA 4UY88 5DM7S 4JXZA 3DLLS 1FEUA 5DM6S 4JYZA 1B75A 4IOCS 2ZJRS 3J7ZV 4JXXA 1EUYA 4WFBS 4U67S 3PIPS 4H3SA 1EXDA 4IOAS 2RE8A 4P2BA 5GAEW 1DFUP 4WCES 4WF9S 5IZNA 4IO9S 1QRTA 1O0BA 1QRUA 1NYLA 2ZJQS 1QTQA 5HL7S 5GAHW 3AIIA 1EUQA 4WFAS 3CF5S 2HZ7A 5JVGS 2RD2A 1QRSA 4WFNS 5BNZA 5GAGW 3PIOS 1GTRA 5GADW 1O0CA
chains in the Genus database with same CATH superfamily
2A68A 2R93C 5JVHS 1UDXA 5DM7S 2O5JA 3HOXC 1TWCC 3WODA 2G6GA 3GTQC 3LYWA 3HOUC 1B75A 2G5DA 1V6ZA 4XSZA 3J7ZV 2KPUA 3GTLC 2R7ZC 1I50C 4ZH4A 1VHYA 4WFBS 4YFXA 3I4NC 4A3GC 4A3JC 4MEYA 1YNJA 1TWFC 3M3YC 4Y52C 2Z0YA 4A3DC 4IOAS 2NVQC 5TMCA 4XLNA 4WCES 5C4XC 4IO9S 3HOWC 4OIOA 2O5IA 1QRUA 1TWGC 3S1RC 1ZYRA 3S2HC 3AIIA 1EUQA 4C3IC 1Z85A 3GTOC 4WFAS 4J3CA 4QJVA 1BDFA 2RD2A 3HOYC 4LK1A 3PIOS 2A69A 1Y1WC 3HOVC 1O0CA 4KN4A 1VHKA 4Q5SA 1IW7A 4BY1C 2JA8C 2L5NA 1Y1VC 4XSXA 2PICA 3DLLS 2VUMC 2WAQD 2R92C 3S1NC 5IP7C 4G7HA 4A3EC 3GTGC 4A3LC 5HQHA 1TWHC 4C3HC 3HOZC 4H4KA 4KMUA 4H3SA 4L69A 1EXDA 2KQ1A 5GAEW 1SMYA 2PJJA 3FKIC 5IZNA 1O0BA 4Y7NC 1QTQA 5GAHW 3HKZD 3KW2A 3X1LB 4BXXC 3CQZC 4A3KC 3CF5S 1QRSA 2WB1D 4OIQA 2A6HA 4AYBD 5GAGW 5TMFA 3S1MC 1QRTA 3S15C 2CX8A 3W2VB 2PNWA 2ZJPS 1TWAC 3H0GC 5C44C 4UY88 5IYCC 4MEXA 2JA6C 3EQLA 4C2MC 1SFOC 2B63C 3GTMC 4X6AC 3S1QC 4KN7A 4OIPA 4G7OA 2EGVA 3PO2C 2PA8D 2ZJRS 5FLMC 2GAEA 4A3BC 1HQMA 4E8BA 4JXXA 4QIWD 2NVXC 1EUYA 4A3FC 5IP9C 2NVYC 3M4OC 1YNNA 2NWAA 3RZDC 2JA5C 1I6HC 2RE8A 4BBSC 2PPBA 4OIRA 4WF9S 1WCMC 4JK1A 5C4JC 4GZYA 2ZJQS 2NVTC 5IYBC 4LLGA 3GTPC 5C3EC 5IYDC 2YU9C 2BE5A 2JA7C 3S16C 2L3UA 2HZ7A 4A3CC 3K7AC 5BNZA 2Y0SD 2E2JC 2KXYA 4LK0A 4NOIA 1GTSA 4MQ9A 1ZJWA 1D6KA 4C3JC 3GTKC 2A6EA 4LJZA 4YG2A 4JXZA 4A3IC 3CZBA 1FEUA 1R9TC 5DM6S 4JYZA 1I6VA 1I3QC 4IOCS 4V194 3S17C 2AE0X 3S2DC 2CW0A 2E2HC 4OINA 4U67S 3I4MC 3S14C 3W2WB 4XLPA 4Q4ZA 3PIPS 4BBRC 3DXJA 3GTJC 4P2BA 1DFUP 4YFNA 2PI8A 4A93C 3RZOC 1NYLA 4BY7C 2EGWA 5HL7S 4G7ZA 4A3MC 4YFKA 1K83C 2PMZD 3H3VD 3PO3C 5JVGS 4WFNS 1NXZA 1GTRA 5GADW 5D4DA 2E2IC
chains in the Genus database with same CATH topology
3W2VB 2ZJPS 5JVHS 1GTSA 1ZJWA 1D6KA 4UY88 1UDXA 5DM7S 4JXZA 3DLLS 1FEUA 5DM6S 4JYZA 1B75A 4IOCS 4V194 2ZJRS 3J7ZV 4JXXA 1EUYA 4WFBS 4U67S 3W2WB 3PIPS 4H4KA 4H3SA 1EXDA 4IOAS 2RE8A 4P2BA 5GAEW 1DFUP 4WCES 4WF9S 5IZNA 4IO9S 1QRTA 1O0BA 1QRUA 1NYLA 2ZJQS 1QTQA 5HL7S 5GAHW 3AIIA 1EUQA 3X1LB 4WFAS 3CF5S 2HZ7A 5JVGS 2RD2A 1QRSA 4WFNS 5BNZA 5GAGW 3PIOS 1GTRA 5GADW 1O0CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZJP S;  5JVH S;  1GTS A;  1ZJW A;  1D6K A;  4UY8 8;  5DM7 S;  4JXZ A;  3DLL S;  1FEU A;  5DM6 S;  4JYZ A;  1B75 A;  4IOC S;  2ZJR S;  3J7Z V;  4JXX A;  1EUY A;  4WFB S;  4U67 S;  3PIP S;  4H3S A;  1EXD A;  4IOA S;  2RE8 A;  4P2B A;  5GAE W;  1DFU P;  4WCE S;  4WF9 S;  5IZN A;  4IO9 S;  1QRT A;  1O0B A;  1QRU A;  1NYL A;  2ZJQ S;  1QTQ A;  5HL7 S;  5GAH W;  3AII A;  1EUQ A;  4WFA S;  3CF5 S;  2HZ7 A;  5JVG S;  2RD2 A;  1QRS A;  4WFN S;  5BNZ A;  5GAG W;  3PIO S;  1GTR A;  5GAD W;  1O0C A; 
#chains in the Genus database with same CATH topology
 2A68 A;  2R93 C;  5JVH S;  1UDX A;  5DM7 S;  2O5J A;  3HOX C;  1TWC C;  3WOD A;  2G6G A;  3GTQ C;  3LYW A;  3HOU C;  1B75 A;  2G5D A;  1V6Z A;  4XSZ A;  3J7Z V;  2KPU A;  3GTL C;  2R7Z C;  1I50 C;  4ZH4 A;  1VHY A;  4WFB S;  4YFX A;  3I4N C;  4A3G C;  4A3J C;  4MEY A;  1YNJ A;  1TWF C;  3M3Y C;  4Y52 C;  2Z0Y A;  4A3D C;  4IOA S;  2NVQ C;  5TMC A;  4XLN A;  4WCE S;  5C4X C;  4IO9 S;  3HOW C;  4OIO A;  2O5I A;  1QRU A;  1TWG C;  3S1R C;  1ZYR A;  3S2H C;  3AII A;  1EUQ A;  4C3I C;  1Z85 A;  3GTO C;  4WFA S;  4J3C A;  4QJV A;  1BDF A;  2RD2 A;  3HOY C;  4LK1 A;  3PIO S;  2A69 A;  1Y1W C;  3HOV C;  1O0C A;  4KN4 A;  1VHK A;  4Q5S A;  1IW7 A;  4BY1 C;  2JA8 C;  2L5N A;  1Y1V C;  4XSX A;  2PIC A;  3DLL S;  2VUM C;  2WAQ D;  2R92 C;  3S1N C;  5IP7 C;  4G7H A;  4A3E C;  3GTG C;  4A3L C;  5HQH A;  1TWH C;  4C3H C;  3HOZ C;  4H4K A;  4KMU A;  4H3S A;  4L69 A;  1EXD A;  2KQ1 A;  5GAE W;  1SMY A;  2PJJ A;  3FKI C;  5IZN A;  1O0B A;  4Y7N C;  1QTQ A;  5GAH W;  3HKZ D;  3KW2 A;  3X1L B;  4BXX C;  3CQZ C;  4A3K C;  3CF5 S;  1QRS A;  2WB1 D;  4OIQ A;  2A6H A;  4AYB D;  5GAG W;  5TMF A;  3S1M C;  1QRT A;  3S15 C;  2CX8 A;  3W2V B;  2PNW A;  2ZJP S;  1TWA C;  3H0G C;  5C44 C;  4UY8 8;  5IYC C;  4MEX A;  2JA6 C;  3EQL A;  4C2M C;  1SFO C;  2B63 C;  3GTM C;  4X6A C;  3S1Q C;  4KN7 A;  4OIP A;  4G7O A;  2EGV A;  3PO2 C;  2PA8 D;  2ZJR S;  5FLM C;  2GAE A;  4A3B C;  1HQM A;  4E8B A;  4JXX A;  4QIW D;  2NVX C;  1EUY A;  4A3F C;  5IP9 C;  2NVY C;  3M4O C;  1YNN A;  2NWA A;  3RZD C;  2JA5 C;  1I6H C;  2RE8 A;  4BBS C;  2PPB A;  4OIR A;  4WF9 S;  1WCM C;  4JK1 A;  5C4J C;  4GZY A;  2ZJQ S;  2NVT C;  5IYB C;  4LLG A;  3GTP C;  5C3E C;  5IYD C;  2YU9 C;  2BE5 A;  2JA7 C;  3S16 C;  2L3U A;  2HZ7 A;  4A3C C;  3K7A C;  5BNZ A;  2Y0S D;  2E2J C;  2KXY A;  4LK0 A;  4NOI A;  1GTS A;  4MQ9 A;  1ZJW A;  1D6K A;  4C3J C;  3GTK C;  2A6E A;  4LJZ A;  4YG2 A;  4JXZ A;  4A3I C;  3CZB A;  1FEU A;  1R9T C;  5DM6 S;  4JYZ A;  1I6V A;  1I3Q C;  4IOC S;  4V19 4;  3S17 C;  2AE0 X;  3S2D C;  2CW0 A;  2E2H C;  4OIN A;  4U67 S;  3I4M C;  3S14 C;  3W2W B;  4XLP A;  4Q4Z A;  3PIP S;  4BBR C;  3DXJ A;  3GTJ C;  4P2B A;  1DFU P;  4YFN A;  2PI8 A;  4A93 C;  3RZO C;  1NYL A;  4BY7 C;  2EGW A;  5HL7 S;  4G7Z A;  4A3M C;  4YFK A;  1K83 C;  2PMZ D;  3H3V D;  3PO3 C;  5JVG S;  4WFN S;  1NXZ A;  1GTR A;  5GAD W;  5D4D A;  2E2I C; 
#chains in the Genus database with same CATH homology
 3W2V B;  2ZJP S;  5JVH S;  1GTS A;  1ZJW A;  1D6K A;  4UY8 8;  1UDX A;  5DM7 S;  4JXZ A;  3DLL S;  1FEU A;  5DM6 S;  4JYZ A;  1B75 A;  4IOC S;  4V19 4;  2ZJR S;  3J7Z V;  4JXX A;  1EUY A;  4WFB S;  4U67 S;  3W2W B;  3PIP S;  4H4K A;  4H3S A;  1EXD A;  4IOA S;  2RE8 A;  4P2B A;  5GAE W;  1DFU P;  4WCE S;  4WF9 S;  5IZN A;  4IO9 S;  1QRT A;  1O0B A;  1QRU A;  1NYL A;  2ZJQ S;  1QTQ A;  5HL7 S;  5GAH W;  3AII A;  1EUQ A;  3X1L B;  4WFA S;  3CF5 S;  2HZ7 A;  5JVG S;  2RD2 A;  1QRS A;  4WFN S;  5BNZ A;  5GAG W;  3PIO S;  1GTR A;  5GAD W;  1O0C A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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