5GAGW

Rnc in complex with srp-sr in the closed state
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
94
structure length
94
Chain Sequence
MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords SRP 4.5S RNA
publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
source organism Escherichia coli
total genus 22
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2015-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF01386 Ribosomal_L25p Ribosomal L25p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 5gagW00
4UY88 3AIIA 1QRSA 4IOAS 4WF9S 5JVGS 1QRTA 5GADW 5HL7S 1GTRA 3J7ZV 2ZJPS 2HZ7A 4WCES 5IZNA 2RD2A 4JYZA 1D6KA 5GAGW 1GTSA 1QRUA 1QTQA 1NYLA 5BNZA 1B75A 2RE8A 3PIPS 1EUYA 5JVHS 1FEUA 5DM6S 3CF5S 4P2BA 4H3SA 5GAHW 3DLLS 4IOCS 1O0BA 4JXZA 4JXXA 1O0CA 4IO9S 4WFAS 1ZJWA 2ZJQS 5DM7S 1EXDA 1EUQA 1DFUP 4WFBS 4WFNS 3PIOS 5GAEW 2ZJRS 4U67S
chains in the Genus database with same CATH superfamily
4H4KA 4UY88 5JVGS 5GADW 3J7ZV 4JYZA 2HZ7A 2ZJPS 5IZNA 1V6ZA 5BNZA 1EUYA 2PJJA 2AE0X 1VHKA 4H3SA 4IOCS 2G5DA 4IO9S 5DM7S 3W2VB 4V194 1QRSA 4WF9S 1QRTA 1NXZA 1D6KA 4JXZA 2RD2A 4J3CA 1NYLA 3PIPS 2NWAA 2Z0YA 3CF5S 2PNWA 5GAHW 1O0CA 1EXDA 3X1LB 3AIIA 1UDXA 4IOAS 1GTRA 1B75A 4WCES 1GTSA 1QRUA 5GAGW 2PI8A 2RE8A 2G6GA 2EGWA 1Z85A 5DM6S 3DLLS 1ZJWA 4WFAS 2ZJQS 1DFUP 3CZBA 4E8BA 4WFNS 1VHYA 2EGVA 1O0BA 5HL7S 2CX8A 3W2WB 1QTQA 2GAEA 3KW2A 5JVHS 1FEUA 4P2BA 4JXXA 2PICA 4L69A 1EUQA 4WFBS 3PIOS 5GAEW 2ZJRS 4U67S
chains in the Genus database with same CATH topology
4H4KA 4UY88 3AIIA 1UDXA 1QRSA 4IOAS 4WF9S 5JVGS 1QRTA 5GADW 5HL7S 1GTRA 3J7ZV 2ZJPS 2HZ7A 3W2WB 5IZNA 4WCES 2RD2A 4JYZA 5GAGW 1D6KA 1GTSA 1QRUA 1NYLA 5BNZA 1QTQA 1B75A 2RE8A 3PIPS 1EUYA 5JVHS 1FEUA 5DM6S 3CF5S 4P2BA 4H3SA 5GAHW 3DLLS 4IOCS 1O0BA 4JXZA 4JXXA 1O0CA 4IO9S 4WFAS 1ZJWA 2ZJQS 5DM7S 1EXDA 1EUQA 1DFUP 3W2VB 4WFBS 3X1LB 4WFNS 4V194 3PIOS 5GAEW 2ZJRS 4U67S
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UY8 8;  3AII A;  1QRS A;  4IOA S;  4WF9 S;  5JVG S;  1QRT A;  5GAD W;  5HL7 S;  1GTR A;  3J7Z V;  2ZJP S;  2HZ7 A;  4WCE S;  5IZN A;  2RD2 A;  4JYZ A;  1D6K A;  5GAG W;  1GTS A;  1QRU A;  1QTQ A;  1NYL A;  5BNZ A;  1B75 A;  2RE8 A;  3PIP S;  1EUY A;  5JVH S;  1FEU A;  5DM6 S;  3CF5 S;  4P2B A;  4H3S A;  5GAH W;  3DLL S;  4IOC S;  1O0B A;  4JXZ A;  4JXX A;  1O0C A;  4IO9 S;  4WFA S;  1ZJW A;  2ZJQ S;  5DM7 S;  1EXD A;  1EUQ A;  1DFU P;  4WFB S;  4WFN S;  3PIO S;  5GAE W;  2ZJR S;  4U67 S; 
#chains in the Genus database with same CATH topology
 4H4K A;  4UY8 8;  5JVG S;  5GAD W;  3J7Z V;  4JYZ A;  2HZ7 A;  2ZJP S;  5IZN A;  1V6Z A;  5BNZ A;  1EUY A;  2PJJ A;  2AE0 X;  1VHK A;  4H3S A;  4IOC S;  2G5D A;  4IO9 S;  5DM7 S;  3W2V B;  4V19 4;  1QRS A;  4WF9 S;  1QRT A;  1NXZ A;  1D6K A;  4JXZ A;  2RD2 A;  4J3C A;  1NYL A;  3PIP S;  2NWA A;  2Z0Y A;  3CF5 S;  2PNW A;  5GAH W;  1O0C A;  1EXD A;  3X1L B;  3AII A;  1UDX A;  4IOA S;  1GTR A;  1B75 A;  4WCE S;  1GTS A;  1QRU A;  5GAG W;  2PI8 A;  2RE8 A;  2G6G A;  2EGW A;  1Z85 A;  5DM6 S;  3DLL S;  1ZJW A;  4WFA S;  2ZJQ S;  1DFU P;  3CZB A;  4E8B A;  4WFN S;  1VHY A;  2EGV A;  1O0B A;  5HL7 S;  2CX8 A;  3W2W B;  1QTQ A;  2GAE A;  3KW2 A;  5JVH S;  1FEU A;  4P2B A;  4JXX A;  2PIC A;  4L69 A;  1EUQ A;  4WFB S;  3PIO S;  5GAE W;  2ZJR S;  4U67 S; 
#chains in the Genus database with same CATH homology
 4H4K A;  4UY8 8;  3AII A;  1UDX A;  1QRS A;  4IOA S;  4WF9 S;  5JVG S;  1QRT A;  5GAD W;  5HL7 S;  1GTR A;  3J7Z V;  2ZJP S;  2HZ7 A;  3W2W B;  5IZN A;  4WCE S;  2RD2 A;  4JYZ A;  5GAG W;  1D6K A;  1GTS A;  1QRU A;  1NYL A;  5BNZ A;  1QTQ A;  1B75 A;  2RE8 A;  3PIP S;  1EUY A;  5JVH S;  1FEU A;  5DM6 S;  3CF5 S;  4P2B A;  4H3S A;  5GAH W;  3DLL S;  4IOC S;  1O0B A;  4JXZ A;  4JXX A;  1O0C A;  4IO9 S;  4WFA S;  1ZJW A;  2ZJQ S;  5DM7 S;  1EXD A;  1EUQ A;  1DFU P;  3W2V B;  4WFB S;  3X1L B;  4WFN S;  4V19 4;  3PIO S;  5GAE W;  2ZJR S;  4U67 S; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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