2PNWA

Crystal structure of membrane-bound lytic murein transglycosylase from agrobacterium tumefaciens
Total Genus 101
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
101
sequence length
365
structure length
354
Chain Sequence
b'FSIDEVSFRDLPGWGQDDPRKLFPAMATILSHLRNAKPYRTGALGITAAELVSLLELAERGQVNSPEQARQFFETNSVPFRISPSGFVTAFYEPELEVSATPDDVWRYPIYRRPPELVDIDNDNRPDGFDPSYAFGKADEEGISYFPDRRAIDEGCLRGRGLEIAWARSKVDLFFVHVQGAARLVFPDGAIKRITYAAKAGHVFSPIGRLLLDRGELDPKTISMQTIRQWLADHPDEVDGVLWHNRSYIFFREAGPIAAAKVPLVAGRALAVDRLIHTFGLPFFIHAPTLTHLDDGKPFARLMLALDTGSAIVGPARGDIFTGSGFEAGELAGTVRNEADFYILLPRIAAERYR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of membrane-bound lytic murein transglycosylase from Agrobacterium tumefaciens.
rcsb
molecule keywords Membrane-bound lytic murein transglycosylase
source organism Agrobacterium tumefaciens str.
molecule tags Hydrolase
total genus 101
structure length 354
sequence length 365
ec nomenclature
pdb deposition date 2007-04-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03562 MltA MltA specific insert domain
A PF06725 3D 3D domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 2pnwA01
2.40.240.50 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Barwin-like endoglucanases 2pnwA02
3CZBA 3ENGA 5GM9A 4JJOA 4L48A 1BW3A 1OA9A 4FG2A 2KQAA 4JS7A 3SUJA 4ZM7A 3SULA 3X2JA 3SUKA 2PNWA 4FFTA 3X2GA 2PICA 2AE0X 3X2IA 1L8FA 4JP6A 5GLXA 3X2KA 2ENGA 1HD5A 4FERA 3M3GA 3X2NA 1BW4A 2PI8A 3X2HA 4JCWA 2PJJA 4ENGA 3X2OA 3X2LA 2HCZX 5H4UA 4FG4A 3SUMA 4JP7A 2BH0A 2GAEA 4AVRA 1N10A 2G5DA 3D30A 2G6GA 1OA7A 1WC2A 3X2PA 3X2MA 5GLYA
chains in the Genus database with same CATH superfamily
3ENGA 2A6HD 2VPZA 4GA5A 2VPWA 1QRSA 4FG2A 1VHKA 2KQAA 3CF2A 4V194 1E18A 1QCSA 1TWHA 5FTKA 3SUJA 4AZDA 4DMRA 3X2JA 1S3SA 1SIWA 1KQGA 4WCES 2BE5D 3GTPA 5C18A 4P2BA 3J7ZV 5JVHS 1QRTA 1E61A 1UDXA 3X2KA 2E2IA 2V45A 4AYBA 1Y4ZA 2NVYA 4D7ZB 4IOAS 1PYUB 1SMYD 1QTQA 3GTKA 1AW8B 3ML1A 1BW4A 2R92A 3X2HA 1R9TA 2PMZA 1EU1A 2PJJA 1UHDA 3X2OA 3QC8A 3SUMA 2B63A 2EGVA 1N10A 2G5DA 1NXZA 1OA7A 1VHYA 4H3SA 5GADW 5B6CA 4JXXA 2A69D 2KI8A 5DYIA 2A68D 4ZM7A 2E2HA 1V6ZA 2HZ7A 3W2WB 4UY88 3GTOA 1G8KA 2EEOB 5T5MD 1CZ4A 4RV0A 4JS7A 1TMOA 1TWCA 1QRUA 3SULA 1H5NA 3HU1A 1DFUP 2CX8A 2PNWA 2VUMA 5GAGW 1GTSA 1E32A 5FTNA 2ZJPS 3X2IA 1E60A 4JP6A 1FDOA 1WCMA 4AAYA 2VPYA 3DLLS 2JA6A 2WB1A 1PPYA 1R7RA 2WAQA 5DYGA 3X2NA 3GTLA 2EGWA 5GAHW 1Y5IA 5T5ID 1EXDA 1I50A 4KODA 2R7ZA 2O5JD 1E5VA 2NAPA 4ENGA 4C2MA 3OUGA 3X2LA 1ZC1A 4FG4A 3GTQA 3PIPS 2Z0YA 2GAEA 1PYQA 3D30A 4AVRA 5C1BA 1K83A 1OGYA 2JIRA 1D6KA 3X2MA 3CZBA 4QIWA 1YNND 4CRZA 1UHEA 5GM9A 1PQEA 4JJOA 4L48A 2V3VA 1NYLA 1G8JA 1OA9A 2NVXA 1TWGA 5FTMA 1BW3A 4H4KA 5IZNA 2R93A 4L69A 5DM6S 1B75A 4WFBS 3IR5A 5GLFA 3SUKA 5BNZA 4JYZA 4FFTA 4AOKB 1GTRA 3X2GA 2PICA 2JA7A 2AE0X 3O5AA 1I3QA 1L8FA 1DMSA 5GLXA 1CZ5A 1HD5A 1DMRA 1PT0A 1YLEA 3FKIA 4FERA 4WFNS 3PIOS 1ZJWA 3W2VB 1PQFA 3KW2A 3IR7A 1FEUA 2ZJQS 1IW7D 2JIOA 2HCZX 2NYAA 3IR6A 2JIMA 4JP7A 5H4UA 2BH0A 1KQFA 2NWAA 1TWAA 2YU9A 2JIPA 1Y1WA 3TIWA 3X2PA 5HL7S 5GAEW 4IO9S 2YUJA 1ZYRD 3HU2A 3H0GA 2RD2A 1R27A 3QWZA 3GTGA 3X1LB 2VPXA 5FTJA 2Y0SA 3HU3A 3HKZA 1H0HA 2A6ED 3CQZA 4E8BA 3GTJA 3DMRA 2JIQA 4KDLA 4NOHA 1Q16A 4J3CA 2PJHB 2IV2X 4IOCS 4WF9S 1CR5A 1PT1A 1Z85A 1TWFA 5FTLA 4KDIA 2ENGA 1WLFA 2ZJRS 4JXZA 3QQ7A 4KLNA 4U67S 1O0CA 1FDIA 3M3GA 1AA6A 1SFOA 1YNJD 3PLXB 2PI8A 4CS0A 2C45A 4JCWA 4WFAS 1QDNA 4AONB 1EUQA 5DM7S 2E7ZA 1VC3B 3GTMA 4KO8A 3QQ8A 1O0BA 3AIIA 1EUYA 2JA5A 3CF5S 2RE8A 5JVGS 2DMRA 2G6GA 4GA6A 1PQHA 1WC2A 1Y1VA 5EPPA 4CRYG 2CW0D 3TM7B 5GLYA
chains in the Genus database with same CATH topology
3ENGA 2A6HD 2VPZA 4GA5A 2VPWA 4FG2A 2KQAA 3CF2A 1E18A 3SUJA 1QCSA 1TWHA 5FTKA 4AZDA 4DMRA 3X2JA 1S3SA 1SIWA 1KQGA 2BE5D 3GTPA 5C18A 1E61A 3X2KA 2E2IA 2V45A 4AYBA 1Y4ZA 2NVYA 4D7ZB 1PYUB 1SMYD 3GTKA 1AW8B 3ML1A 1BW4A 2R92A 3X2HA 1R9TA 2PMZA 1EU1A 2PJJA 3X2OA 1UHDA 3SUMA 3QC8A 2B63A 1N10A 2G5DA 1OA7A 5B6CA 2A69D 2KI8A 4ZM7A 2A68D 5DYIA 2E2HA 3GTOA 1G8KA 2EEOB 5T5MD 1CZ4A 4RV0A 4JS7A 1TMOA 1TWCA 3SULA 1H5NA 3HU1A 2PNWA 2VUMA 1E32A 5FTNA 3X2IA 4JP6A 1E60A 1FDOA 1WCMA 4AAYA 2VPYA 2JA6A 2WB1A 1PPYA 1R7RA 2WAQA 5DYGA 3X2NA 3GTLA 1Y5IA 5T5ID 1I50A 4KODA 2R7ZA 2O5JD 1E5VA 2NAPA 4ENGA 4C2MA 3X2LA 3OUGA 1ZC1A 4FG4A 3GTQA 2GAEA 4AVRA 3D30A 1PYQA 5C1BA 1K83A 1OGYA 2JIRA 3X2MA 3CZBA 4QIWA 1YNND 4CRZA 5GM9A 1UHEA 4JJOA 1PQEA 4L48A 2V3VA 1BW3A 1OA9A 1G8JA 1TWGA 5FTMA 2NVXA 2R93A 3IR5A 5GLFA 3SUKA 4FFTA 4AOKB 3X2GA 2PICA 2JA7A 2AE0X 3O5AA 1I3QA 1L8FA 5GLXA 1DMSA 1CZ5A 1HD5A 1DMRA 1PT0A 1YLEA 3FKIA 4FERA 1PQFA 3IR7A 1IW7D 2JIOA 2HCZX 5H4UA 2NYAA 2JIMA 4JP7A 3IR6A 2BH0A 1KQFA 1TWAA 2YU9A 2JIPA 1Y1WA 3X2PA 3TIWA 2YUJA 1ZYRD 3HU2A 3H0GA 1R27A 3QWZA 3GTGA 2VPXA 5FTJA 2Y0SA 3HU3A 3HKZA 1H0HA 2A6ED 3CQZA 3GTJA 3DMRA 2JIQA 4KDLA 4NOHA 1Q16A 2PJHB 2IV2X 1CR5A 1PT1A 1TWFA 5FTLA 4KDIA 2ENGA 1WLFA 3QQ7A 4KLNA 1FDIA 3M3GA 1AA6A 1SFOA 1YNJD 3PLXB 2PI8A 4CS0A 4JCWA 2C45A 1QDNA 4AONB 2E7ZA 1VC3B 3GTMA 4KO8A 3QQ8A 2JA5A 2G6GA 2DMRA 4GA6A 1PQHA 1WC2A 1Y1VA 5EPPA 4CRYG 2CW0D 3TM7B 5GLYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CZB A;  3ENG A;  5GM9 A;  4JJO A;  4L48 A;  1BW3 A;  1OA9 A;  4FG2 A;  2KQA A;  4JS7 A;  3SUJ A;  4ZM7 A;  3SUL A;  3X2J A;  3SUK A;  2PNW A;  4FFT A;  3X2G A;  2PIC A;  2AE0 X;  3X2I A;  1L8F A;  4JP6 A;  5GLX A;  3X2K A;  2ENG A;  1HD5 A;  4FER A;  3M3G A;  3X2N A;  1BW4 A;  2PI8 A;  3X2H A;  4JCW A;  2PJJ A;  4ENG A;  3X2O A;  3X2L A;  2HCZ X;  5H4U A;  4FG4 A;  3SUM A;  4JP7 A;  2BH0 A;  2GAE A;  4AVR A;  1N10 A;  2G5D A;  3D30 A;  2G6G A;  1OA7 A;  1WC2 A;  3X2P A;  3X2M A;  5GLY A; 
#chains in the Genus database with same CATH topology
 3ENG A;  2A6H D;  2VPZ A;  4GA5 A;  2VPW A;  1QRS A;  4FG2 A;  1VHK A;  2KQA A;  3CF2 A;  4V19 4;  1E18 A;  1QCS A;  1TWH A;  5FTK A;  3SUJ A;  4AZD A;  4DMR A;  3X2J A;  1S3S A;  1SIW A;  1KQG A;  4WCE S;  2BE5 D;  3GTP A;  5C18 A;  4P2B A;  3J7Z V;  5JVH S;  1QRT A;  1E61 A;  1UDX A;  3X2K A;  2E2I A;  2V45 A;  4AYB A;  1Y4Z A;  2NVY A;  4D7Z B;  4IOA S;  1PYU B;  1SMY D;  1QTQ A;  3GTK A;  1AW8 B;  3ML1 A;  1BW4 A;  2R92 A;  3X2H A;  1R9T A;  2PMZ A;  1EU1 A;  2PJJ A;  1UHD A;  3X2O A;  3QC8 A;  3SUM A;  2B63 A;  2EGV A;  1N10 A;  2G5D A;  1NXZ A;  1OA7 A;  1VHY A;  4H3S A;  5GAD W;  5B6C A;  4JXX A;  2A69 D;  2KI8 A;  5DYI A;  2A68 D;  4ZM7 A;  2E2H A;  1V6Z A;  2HZ7 A;  3W2W B;  4UY8 8;  3GTO A;  1G8K A;  2EEO B;  5T5M D;  1CZ4 A;  4RV0 A;  4JS7 A;  1TMO A;  1TWC A;  1QRU A;  3SUL A;  1H5N A;  3HU1 A;  1DFU P;  2CX8 A;  2PNW A;  2VUM A;  5GAG W;  1GTS A;  1E32 A;  5FTN A;  2ZJP S;  3X2I A;  1E60 A;  4JP6 A;  1FDO A;  1WCM A;  4AAY A;  2VPY A;  3DLL S;  2JA6 A;  2WB1 A;  1PPY A;  1R7R A;  2WAQ A;  5DYG A;  3X2N A;  3GTL A;  2EGW A;  5GAH W;  1Y5I A;  5T5I D;  1EXD A;  1I50 A;  4KOD A;  2R7Z A;  2O5J D;  1E5V A;  2NAP A;  4ENG A;  4C2M A;  3OUG A;  3X2L A;  1ZC1 A;  4FG4 A;  3GTQ A;  3PIP S;  2Z0Y A;  2GAE A;  1PYQ A;  3D30 A;  4AVR A;  5C1B A;  1K83 A;  1OGY A;  2JIR A;  1D6K A;  3X2M A;  3CZB A;  4QIW A;  1YNN D;  4CRZ A;  1UHE A;  5GM9 A;  1PQE A;  4JJO A;  4L48 A;  2V3V A;  1NYL A;  1G8J A;  1OA9 A;  2NVX A;  1TWG A;  5FTM A;  1BW3 A;  4H4K A;  5IZN A;  2R93 A;  4L69 A;  5DM6 S;  1B75 A;  4WFB S;  3IR5 A;  5GLF A;  3SUK A;  5BNZ A;  4JYZ A;  4FFT A;  4AOK B;  1GTR A;  3X2G A;  2PIC A;  2JA7 A;  2AE0 X;  3O5A A;  1I3Q A;  1L8F A;  1DMS A;  5GLX A;  1CZ5 A;  1HD5 A;  1DMR A;  1PT0 A;  1YLE A;  3FKI A;  4FER A;  4WFN S;  3PIO S;  1ZJW A;  3W2V B;  1PQF A;  3KW2 A;  3IR7 A;  1FEU A;  2ZJQ S;  1IW7 D;  2JIO A;  2HCZ X;  2NYA A;  3IR6 A;  2JIM A;  4JP7 A;  5H4U A;  2BH0 A;  1KQF A;  2NWA A;  1TWA A;  2YU9 A;  2JIP A;  1Y1W A;  3TIW A;  3X2P A;  5HL7 S;  5GAE W;  4IO9 S;  2YUJ A;  1ZYR D;  3HU2 A;  3H0G A;  2RD2 A;  1R27 A;  3QWZ A;  3GTG A;  3X1L B;  2VPX A;  5FTJ A;  2Y0S A;  3HU3 A;  3HKZ A;  1H0H A;  2A6E D;  3CQZ A;  4E8B A;  3GTJ A;  3DMR A;  2JIQ A;  4KDL A;  4NOH A;  1Q16 A;  4J3C A;  2PJH B;  2IV2 X;  4IOC S;  4WF9 S;  1CR5 A;  1PT1 A;  1Z85 A;  1TWF A;  5FTL A;  4KDI A;  2ENG A;  1WLF A;  2ZJR S;  4JXZ A;  3QQ7 A;  4KLN A;  4U67 S;  1O0C A;  1FDI A;  3M3G A;  1AA6 A;  1SFO A;  1YNJ D;  3PLX B;  2PI8 A;  4CS0 A;  2C45 A;  4JCW A;  4WFA S;  1QDN A;  4AON B;  1EUQ A;  5DM7 S;  2E7Z A;  1VC3 B;  3GTM A;  4KO8 A;  3QQ8 A;  1O0B A;  3AII A;  1EUY A;  2JA5 A;  3CF5 S;  2RE8 A;  5JVG S;  2DMR A;  2G6G A;  4GA6 A;  1PQH A;  1WC2 A;  1Y1V A;  5EPP A;  4CRY G;  2CW0 D;  3TM7 B;  5GLY A; 
#chains in the Genus database with same CATH homology
 3ENG A;  2A6H D;  2VPZ A;  4GA5 A;  2VPW A;  4FG2 A;  2KQA A;  3CF2 A;  1E18 A;  3SUJ A;  1QCS A;  1TWH A;  5FTK A;  4AZD A;  4DMR A;  3X2J A;  1S3S A;  1SIW A;  1KQG A;  2BE5 D;  3GTP A;  5C18 A;  1E61 A;  3X2K A;  2E2I A;  2V45 A;  4AYB A;  1Y4Z A;  2NVY A;  4D7Z B;  1PYU B;  1SMY D;  3GTK A;  1AW8 B;  3ML1 A;  1BW4 A;  2R92 A;  3X2H A;  1R9T A;  2PMZ A;  1EU1 A;  2PJJ A;  3X2O A;  1UHD A;  3SUM A;  3QC8 A;  2B63 A;  1N10 A;  2G5D A;  1OA7 A;  5B6C A;  2A69 D;  2KI8 A;  4ZM7 A;  2A68 D;  5DYI A;  2E2H A;  3GTO A;  1G8K A;  2EEO B;  5T5M D;  1CZ4 A;  4RV0 A;  4JS7 A;  1TMO A;  1TWC A;  3SUL A;  1H5N A;  3HU1 A;  2PNW A;  2VUM A;  1E32 A;  5FTN A;  3X2I A;  4JP6 A;  1E60 A;  1FDO A;  1WCM A;  4AAY A;  2VPY A;  2JA6 A;  2WB1 A;  1PPY A;  1R7R A;  2WAQ A;  5DYG A;  3X2N A;  3GTL A;  1Y5I A;  5T5I D;  1I50 A;  4KOD A;  2R7Z A;  2O5J D;  1E5V A;  2NAP A;  4ENG A;  4C2M A;  3X2L A;  3OUG A;  1ZC1 A;  4FG4 A;  3GTQ A;  2GAE A;  4AVR A;  3D30 A;  1PYQ A;  5C1B A;  1K83 A;  1OGY A;  2JIR A;  3X2M A;  3CZB A;  4QIW A;  1YNN D;  4CRZ A;  5GM9 A;  1UHE A;  4JJO A;  1PQE A;  4L48 A;  2V3V A;  1BW3 A;  1OA9 A;  1G8J A;  1TWG A;  5FTM A;  2NVX A;  2R93 A;  3IR5 A;  5GLF A;  3SUK A;  4FFT A;  4AOK B;  3X2G A;  2PIC A;  2JA7 A;  2AE0 X;  3O5A A;  1I3Q A;  1L8F A;  5GLX A;  1DMS A;  1CZ5 A;  1HD5 A;  1DMR A;  1PT0 A;  1YLE A;  3FKI A;  4FER A;  1PQF A;  3IR7 A;  1IW7 D;  2JIO A;  2HCZ X;  5H4U A;  2NYA A;  2JIM A;  4JP7 A;  3IR6 A;  2BH0 A;  1KQF A;  1TWA A;  2YU9 A;  2JIP A;  1Y1W A;  3X2P A;  3TIW A;  2YUJ A;  1ZYR D;  3HU2 A;  3H0G A;  1R27 A;  3QWZ A;  3GTG A;  2VPX A;  5FTJ A;  2Y0S A;  3HU3 A;  3HKZ A;  1H0H A;  2A6E D;  3CQZ A;  3GTJ A;  3DMR A;  2JIQ A;  4KDL A;  4NOH A;  1Q16 A;  2PJH B;  2IV2 X;  1CR5 A;  1PT1 A;  1TWF A;  5FTL A;  4KDI A;  2ENG A;  1WLF A;  3QQ7 A;  4KLN A;  1FDI A;  3M3G A;  1AA6 A;  1SFO A;  1YNJ D;  3PLX B;  2PI8 A;  4CS0 A;  4JCW A;  2C45 A;  1QDN A;  4AON B;  2E7Z A;  1VC3 B;  3GTM A;  4KO8 A;  3QQ8 A;  2JA5 A;  2G6G A;  2DMR A;  4GA6 A;  1PQH A;  1WC2 A;  1Y1V A;  5EPP A;  4CRY G;  2CW0 D;  3TM7 B;  5GLY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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