2PNWA

Crystal structure of membrane-bound lytic murein transglycosylase from agrobacterium tumefaciens
Total Genus 101
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
101
sequence length
365
structure length
354
Chain Sequence
FSIDEVSFRDLPGWGQDDPRKLFPAMATILSHLRNAKPYRTGALGITAAELVSLLELAERGQVNSPEQARQFFETNSVPFRISPSGFVTAFYEPELEVSATPDDVWRYPIYRRPPELVDIDNDNRPDGFDPSYAFGKADEEGISYFPDRRAIDEGCLRGRGLEIAWARSKVDLFFVHVQGAARLVFPDGAIKRITYAAKAGHVFSPIGRLLLDRGELDPKTISMQTIRQWLADHPDEVDGVLWHNRSYIFFREAGPIAAAKVPLVAGRALAVDRLIHTFGLPFFIHAPTLTHLDDGKPFARLMLALDTGSAIVGPARGDIFTGSGFEAGELAGTVRNEADFYILLPRIAAERYR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Membrane-bound lytic murein transglycosylase
publication title Crystal structure of membrane-bound lytic murein transglycosylase from Agrobacterium tumefaciens.
rcsb
source organism Agrobacterium tumefaciens str.
molecule tags Hydrolase
total genus 101
structure length 354
sequence length 365
ec nomenclature
pdb deposition date 2007-04-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03562 MltA MltA specific insert domain
A PF06725 3D 3D domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 2pnwA01
2.40.240.50 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Barwin-like endoglucanases 2pnwA02
2GAEA 4JP6A 3X2IA 4ENGA 2HCZX 3X2PA 2G5DA 1WC2A 3X2KA 3X2NA 4JJOA 1L8FA 4FERA 4FG4A 3SUJA 3ENGA 3CZBA 3SULA 1BW3A 1HD5A 2PICA 3X2MA 3D30A 4FFTA 5GLXA 1BW4A 2G6GA 4FG2A 5GLYA 4JCWA 1N10A 3X2JA 5GM9A 2PI8A 3M3GA 2ENGA 2KQAA 4JP7A 1OA7A 4L48A 3X2LA 5H4UA 2AE0X 4AVRA 2BH0A 2PNWA 3X2HA 3X2GA 3SUKA 4JS7A 3SUMA 4ZM7A 3X2OA 2PJJA 1OA9A
chains in the Genus database with same CATH superfamily
1G8JA 4JP6A 1I50A 2JA5A 1DFUP 4ENGA 2HCZX 3GTPA 4H3SA 5BNZA 5FTMA 1NXZA 1B75A 1WC2A 1WLFA 1TMOA 3X2KA 1SFOA 1UDXA 3X1LB 2PJHB 3IR6A 1TWFA 2JIOA 4JJOA 3X2NA 2VUMA 2HZ7A 2JIMA 1D6KA 3SUJA 4GA6A 4GA5A 1BW3A 1QDNA 2ZJRS 3O5AA 3CF5S 1FDOA 3PIPS 3H0GA 4FG2A 1YNND 4JCWA 1VHYA 1G8KA 5HL7S 3QWZA 4WFBS 4AONB 2ZJPS 1Y1VA 5DYGA 3M3GA 1FDIA 2EEOB 3X2LA 2EGVA 1ZJWA 3GTMA 2R7ZA 1QRSA 3X2HA 5JVGS 3X2GA 3J7ZV 1KQFA 1EXDA 1PT1A 3IR7A 2PJJA 1OA9A 4QIWA 3TIWA 2B63A 4JXXA 3X2IA 2CW0D 2V3VA 4WFNS 1EUQA 2Y0SA 1E61A 1H0HA 4KDIA 5FTNA 3TM7B 4CRYG 2VPYA 2R92A 2O5JD 4AOKB 4H4KA 2G5DA 3W2WB 2NVYA 1L8FA 4C2MA 1CR5A 2Z0YA 4FG4A 4AYBA 3GTQA 2JIPA 3CQZA 2NWAA 3AIIA 2JIQA 1R27A 1K83A 2ZJQS 4J3CA 5GLFA 3HU1A 1HD5A 2PICA 1NYLA 1O0CA 1PYQA 4UY88 1OGYA 2G6GA 1GTSA 2JA7A 5GLYA 5DM6S 3HKZA 2RD2A 1QCSA 1AW8B 5T5ID 2A69D 4L48A 1AA6A 2VPWA 4JP7A 2AE0X 2BH0A 2IV2X 1VC3B 1SMYD 4IOCS 4ZM7A 4JS7A 5B6CA 3GTLA 4JXZA 1WCMA 1Z85A 4E8BA 3PIOS 3IR5A 1Q16A 4WF9S 5EPPA 4IO9S 4U67S 4D7ZB 2RE8A 1PYUB 4WFAS 1ZC1A 2A6ED 4KODA 1E5VA 3X2PA 1YNJD 2JIRA 4P2BA 4CRZA 3GTOA 5JVHS 1PPYA 5DYIA 1PQEA 2DMRA 4FERA 4KO8A 1R9TA 4KDLA 5FTKA 1TWCA 2C45A 1QTQA 4WCES 3SULA 1TWGA 3ML1A 4RV0A 1VHKA 5T5MD 4AAYA 5GAEW 1QRTA 1UHEA 1I3QA 4NOHA 2YU9A 3W2VB 5DM7S 3QQ7A 2KI8A 1V6ZA 1FEUA 4AZDA 4CS0A 5C1BA 5IZNA 2PI8A 3PLXB 1O0BA 1GTRA 1OA7A 5FTJA 1IW7D 1H5NA 5H4UA 1Y5IA 2NYAA 3DMRA 3HU3A 4AVRA 1KQGA 3GTKA 2JA6A 3QQ8A 4DMRA 3SUMA 1UHDA 3OUGA 3X2OA 5GADW 1DMRA 2WB1A 2NVXA 5FTLA 2GAEA 4JYZA 2V45A 4V194 1E32A 2BE5D 2YUJA 2VPZA 5GAGW 4L69A 3QC8A 1CZ4A 3KW2A 2EGWA 1CZ5A 1R7RA 1Y4ZA 4IOAS 1TWHA 2A68D 3HU2A 3ENGA 3CZBA 2PMZA 2E2HA 3GTGA 1PQFA 1S3SA 1E18A 2E7ZA 3X2MA 2CX8A 1ZYRD 3D30A 3FKIA 4FFTA 2WAQA 5GLXA 1PT0A 5C18A 1SIWA 2R93A 1BW4A 4KLNA 2NAPA 1N10A 1DMSA 2VPXA 3X2JA 5GM9A 2A6HD 2ENGA 2KQAA 1EUYA 3DLLS 1EU1A 2PNWA 2E2IA 1E60A 1Y1WA 1YLEA 3SUKA 3GTJA 5GAHW 3CF2A 1QRUA 1TWAA 1PQHA
chains in the Genus database with same CATH topology
4JP6A 1G8JA 1I50A 2JA5A 4ENGA 2HCZX 3GTPA 5FTMA 1WC2A 1WLFA 3X2KA 1TMOA 1SFOA 3X2NA 2PJHB 1TWFA 4JJOA 2JIOA 3IR6A 2VUMA 2JIMA 3SUJA 4GA6A 4GA5A 1BW3A 1QDNA 3O5AA 1FDOA 4FG2A 3H0GA 1YNND 4JCWA 1G8KA 3QWZA 4AONB 1Y1VA 5DYGA 3M3GA 1FDIA 2EEOB 3X2LA 3GTMA 2R7ZA 3X2HA 3X2GA 1KQFA 1PT1A 3IR7A 2PJJA 1OA9A 4QIWA 3TIWA 2B63A 3X2IA 2CW0D 2V3VA 2Y0SA 1E61A 1H0HA 4KDIA 5FTNA 3TM7B 4CRYG 2VPYA 2R92A 2O5JD 4AOKB 2G5DA 2NVYA 1L8FA 4C2MA 1CR5A 4FG4A 4AYBA 3GTQA 2JIPA 3CQZA 2JIQA 1R27A 1K83A 5GLFA 3HU1A 1HD5A 2PICA 1PYQA 1OGYA 2G6GA 2JA7A 5GLYA 3HKZA 1QCSA 1AW8B 5T5ID 4L48A 2A69D 1AA6A 4JP7A 2VPWA 2AE0X 2BH0A 2IV2X 1VC3B 1SMYD 4ZM7A 4JS7A 5B6CA 3GTLA 1WCMA 3IR5A 1Q16A 5EPPA 4D7ZB 1PYUB 1ZC1A 2A6ED 4KODA 3X2PA 1E5VA 1YNJD 2JIRA 4CRZA 3GTOA 1PPYA 5DYIA 1PQEA 4FERA 2DMRA 4KO8A 1R9TA 4KDLA 5FTKA 1TWCA 2C45A 3SULA 1TWGA 3ML1A 4RV0A 5T5MD 4AAYA 1UHEA 1I3QA 4NOHA 2YU9A 3QQ7A 2KI8A 4AZDA 4CS0A 5C1BA 2PI8A 3PLXB 1OA7A 5H4UA 4AVRA 1IW7D 1H5NA 1Y5IA 2NYAA 3DMRA 3HU3A 5FTJA 1KQGA 3GTKA 2JA6A 3QQ8A 4DMRA 3SUMA 1UHDA 3OUGA 3X2OA 1DMRA 2WB1A 2NVXA 5FTLA 2GAEA 2V45A 1E32A 2BE5D 2YUJA 2VPZA 3QC8A 1CZ4A 1CZ5A 1R7RA 1Y4ZA 1TWHA 2A68D 3HU2A 3ENGA 3CZBA 2PMZA 2E2HA 3GTGA 1PQFA 1S3SA 1E18A 2E7ZA 3X2MA 3D30A 4FFTA 5GLXA 1BW4A 1ZYRD 2WAQA 1PT0A 3FKIA 1SIWA 5C18A 2R93A 4KLNA 2NAPA 1N10A 1DMSA 2VPXA 3X2JA 5GM9A 2A6HD 2ENGA 2KQAA 1EU1A 2PNWA 2E2IA 1E60A 1Y1WA 1YLEA 3SUKA 3GTJA 3CF2A 1TWAA 1PQHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GAE A;  4JP6 A;  3X2I A;  4ENG A;  2HCZ X;  3X2P A;  2G5D A;  1WC2 A;  3X2K A;  3X2N A;  4JJO A;  1L8F A;  4FER A;  4FG4 A;  3SUJ A;  3ENG A;  3CZB A;  3SUL A;  1BW3 A;  1HD5 A;  2PIC A;  3X2M A;  3D30 A;  4FFT A;  5GLX A;  1BW4 A;  2G6G A;  4FG2 A;  5GLY A;  4JCW A;  1N10 A;  3X2J A;  5GM9 A;  2PI8 A;  3M3G A;  2ENG A;  2KQA A;  4JP7 A;  1OA7 A;  4L48 A;  3X2L A;  5H4U A;  2AE0 X;  4AVR A;  2BH0 A;  2PNW A;  3X2H A;  3X2G A;  3SUK A;  4JS7 A;  3SUM A;  4ZM7 A;  3X2O A;  2PJJ A;  1OA9 A; 
#chains in the Genus database with same CATH topology
 1G8J A;  4JP6 A;  1I50 A;  2JA5 A;  1DFU P;  4ENG A;  2HCZ X;  3GTP A;  4H3S A;  5BNZ A;  5FTM A;  1NXZ A;  1B75 A;  1WC2 A;  1WLF A;  1TMO A;  3X2K A;  1SFO A;  1UDX A;  3X1L B;  2PJH B;  3IR6 A;  1TWF A;  2JIO A;  4JJO A;  3X2N A;  2VUM A;  2HZ7 A;  2JIM A;  1D6K A;  3SUJ A;  4GA6 A;  4GA5 A;  1BW3 A;  1QDN A;  2ZJR S;  3O5A A;  3CF5 S;  1FDO A;  3PIP S;  3H0G A;  4FG2 A;  1YNN D;  4JCW A;  1VHY A;  1G8K A;  5HL7 S;  3QWZ A;  4WFB S;  4AON B;  2ZJP S;  1Y1V A;  5DYG A;  3M3G A;  1FDI A;  2EEO B;  3X2L A;  2EGV A;  1ZJW A;  3GTM A;  2R7Z A;  1QRS A;  3X2H A;  5JVG S;  3X2G A;  3J7Z V;  1KQF A;  1EXD A;  1PT1 A;  3IR7 A;  2PJJ A;  1OA9 A;  4QIW A;  3TIW A;  2B63 A;  4JXX A;  3X2I A;  2CW0 D;  2V3V A;  4WFN S;  1EUQ A;  2Y0S A;  1E61 A;  1H0H A;  4KDI A;  5FTN A;  3TM7 B;  4CRY G;  2VPY A;  2R92 A;  2O5J D;  4AOK B;  4H4K A;  2G5D A;  3W2W B;  2NVY A;  1L8F A;  4C2M A;  1CR5 A;  2Z0Y A;  4FG4 A;  4AYB A;  3GTQ A;  2JIP A;  3CQZ A;  2NWA A;  3AII A;  2JIQ A;  1R27 A;  1K83 A;  2ZJQ S;  4J3C A;  5GLF A;  3HU1 A;  1HD5 A;  2PIC A;  1NYL A;  1O0C A;  1PYQ A;  4UY8 8;  1OGY A;  2G6G A;  1GTS A;  2JA7 A;  5GLY A;  5DM6 S;  3HKZ A;  2RD2 A;  1QCS A;  1AW8 B;  5T5I D;  2A69 D;  4L48 A;  1AA6 A;  2VPW A;  4JP7 A;  2AE0 X;  2BH0 A;  2IV2 X;  1VC3 B;  1SMY D;  4IOC S;  4ZM7 A;  4JS7 A;  5B6C A;  3GTL A;  4JXZ A;  1WCM A;  1Z85 A;  4E8B A;  3PIO S;  3IR5 A;  1Q16 A;  4WF9 S;  5EPP A;  4IO9 S;  4U67 S;  4D7Z B;  2RE8 A;  1PYU B;  4WFA S;  1ZC1 A;  2A6E D;  4KOD A;  1E5V A;  3X2P A;  1YNJ D;  2JIR A;  4P2B A;  4CRZ A;  3GTO A;  5JVH S;  1PPY A;  5DYI A;  1PQE A;  2DMR A;  4FER A;  4KO8 A;  1R9T A;  4KDL A;  5FTK A;  1TWC A;  2C45 A;  1QTQ A;  4WCE S;  3SUL A;  1TWG A;  3ML1 A;  4RV0 A;  1VHK A;  5T5M D;  4AAY A;  5GAE W;  1QRT A;  1UHE A;  1I3Q A;  4NOH A;  2YU9 A;  3W2V B;  5DM7 S;  3QQ7 A;  2KI8 A;  1V6Z A;  1FEU A;  4AZD A;  4CS0 A;  5C1B A;  5IZN A;  2PI8 A;  3PLX B;  1O0B A;  1GTR A;  1OA7 A;  5FTJ A;  1IW7 D;  1H5N A;  5H4U A;  1Y5I A;  2NYA A;  3DMR A;  3HU3 A;  4AVR A;  1KQG A;  3GTK A;  2JA6 A;  3QQ8 A;  4DMR A;  3SUM A;  1UHD A;  3OUG A;  3X2O A;  5GAD W;  1DMR A;  2WB1 A;  2NVX A;  5FTL A;  2GAE A;  4JYZ A;  2V45 A;  4V19 4;  1E32 A;  2BE5 D;  2YUJ A;  2VPZ A;  5GAG W;  4L69 A;  3QC8 A;  1CZ4 A;  3KW2 A;  2EGW A;  1CZ5 A;  1R7R A;  1Y4Z A;  4IOA S;  1TWH A;  2A68 D;  3HU2 A;  3ENG A;  3CZB A;  2PMZ A;  2E2H A;  3GTG A;  1PQF A;  1S3S A;  1E18 A;  2E7Z A;  3X2M A;  2CX8 A;  1ZYR D;  3D30 A;  3FKI A;  4FFT A;  2WAQ A;  5GLX A;  1PT0 A;  5C18 A;  1SIW A;  2R93 A;  1BW4 A;  4KLN A;  2NAP A;  1N10 A;  1DMS A;  2VPX A;  3X2J A;  5GM9 A;  2A6H D;  2ENG A;  2KQA A;  1EUY A;  3DLL S;  1EU1 A;  2PNW A;  2E2I A;  1E60 A;  1Y1W A;  1YLE A;  3SUK A;  3GTJ A;  5GAH W;  3CF2 A;  1QRU A;  1TWA A;  1PQH A; 
#chains in the Genus database with same CATH homology
 4JP6 A;  1G8J A;  1I50 A;  2JA5 A;  4ENG A;  2HCZ X;  3GTP A;  5FTM A;  1WC2 A;  1WLF A;  3X2K A;  1TMO A;  1SFO A;  3X2N A;  2PJH B;  1TWF A;  4JJO A;  2JIO A;  3IR6 A;  2VUM A;  2JIM A;  3SUJ A;  4GA6 A;  4GA5 A;  1BW3 A;  1QDN A;  3O5A A;  1FDO A;  4FG2 A;  3H0G A;  1YNN D;  4JCW A;  1G8K A;  3QWZ A;  4AON B;  1Y1V A;  5DYG A;  3M3G A;  1FDI A;  2EEO B;  3X2L A;  3GTM A;  2R7Z A;  3X2H A;  3X2G A;  1KQF A;  1PT1 A;  3IR7 A;  2PJJ A;  1OA9 A;  4QIW A;  3TIW A;  2B63 A;  3X2I A;  2CW0 D;  2V3V A;  2Y0S A;  1E61 A;  1H0H A;  4KDI A;  5FTN A;  3TM7 B;  4CRY G;  2VPY A;  2R92 A;  2O5J D;  4AOK B;  2G5D A;  2NVY A;  1L8F A;  4C2M A;  1CR5 A;  4FG4 A;  4AYB A;  3GTQ A;  2JIP A;  3CQZ A;  2JIQ A;  1R27 A;  1K83 A;  5GLF A;  3HU1 A;  1HD5 A;  2PIC A;  1PYQ A;  1OGY A;  2G6G A;  2JA7 A;  5GLY A;  3HKZ A;  1QCS A;  1AW8 B;  5T5I D;  4L48 A;  2A69 D;  1AA6 A;  4JP7 A;  2VPW A;  2AE0 X;  2BH0 A;  2IV2 X;  1VC3 B;  1SMY D;  4ZM7 A;  4JS7 A;  5B6C A;  3GTL A;  1WCM A;  3IR5 A;  1Q16 A;  5EPP A;  4D7Z B;  1PYU B;  1ZC1 A;  2A6E D;  4KOD A;  3X2P A;  1E5V A;  1YNJ D;  2JIR A;  4CRZ A;  3GTO A;  1PPY A;  5DYI A;  1PQE A;  4FER A;  2DMR A;  4KO8 A;  1R9T A;  4KDL A;  5FTK A;  1TWC A;  2C45 A;  3SUL A;  1TWG A;  3ML1 A;  4RV0 A;  5T5M D;  4AAY A;  1UHE A;  1I3Q A;  4NOH A;  2YU9 A;  3QQ7 A;  2KI8 A;  4AZD A;  4CS0 A;  5C1B A;  2PI8 A;  3PLX B;  1OA7 A;  5H4U A;  4AVR A;  1IW7 D;  1H5N A;  1Y5I A;  2NYA A;  3DMR A;  3HU3 A;  5FTJ A;  1KQG A;  3GTK A;  2JA6 A;  3QQ8 A;  4DMR A;  3SUM A;  1UHD A;  3OUG A;  3X2O A;  1DMR A;  2WB1 A;  2NVX A;  5FTL A;  2GAE A;  2V45 A;  1E32 A;  2BE5 D;  2YUJ A;  2VPZ A;  3QC8 A;  1CZ4 A;  1CZ5 A;  1R7R A;  1Y4Z A;  1TWH A;  2A68 D;  3HU2 A;  3ENG A;  3CZB A;  2PMZ A;  2E2H A;  3GTG A;  1PQF A;  1S3S A;  1E18 A;  2E7Z A;  3X2M A;  3D30 A;  4FFT A;  5GLX A;  1BW4 A;  1ZYR D;  2WAQ A;  1PT0 A;  3FKI A;  1SIW A;  5C18 A;  2R93 A;  4KLN A;  2NAP A;  1N10 A;  1DMS A;  2VPX A;  3X2J A;  5GM9 A;  2A6H D;  2ENG A;  2KQA A;  1EU1 A;  2PNW A;  2E2I A;  1E60 A;  1Y1W A;  1YLE A;  3SUK A;  3GTJ A;  3CF2 A;  1TWA A;  1PQH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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