2PNWA

Crystal structure of membrane-bound lytic murein transglycosylase from agrobacterium tumefaciens
Total Genus 101
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
101
sequence length
365
structure length
354
Chain Sequence
FSIDEVSFRDLPGWGQDDPRKLFPAMATILSHLRNAKPYRTGALGITAAELVSLLELAERGQVNSPEQARQFFETNSVPFRISPSGFVTAFYEPELEVSATPDDVWRYPIYRRPPELVDIDNDNRPDGFDPSYAFGKADEEGISYFPDRRAIDEGCLRGRGLEIAWARSKVDLFFVHVQGAARLVFPDGAIKRITYAAKAGHVFSPIGRLLLDRGELDPKTISMQTIRQWLADHPDEVDGVLWHNRSYIFFREAGPIAAAKVPLVAGRALAVDRLIHTFGLPFFIHAPTLTHLDDGKPFARLMLALDTGSAIVGPARGDIFTGSGFEAGELAGTVRNEADFYILLPRIAAERYR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Agrobacterium tumefaciens str.
publication title Crystal structure of membrane-bound lytic murein transglycosylase from Agrobacterium tumefaciens.
rcsb
molecule keywords Membrane-bound lytic murein transglycosylase
total genus 101
structure length 354
sequence length 365
ec nomenclature
pdb deposition date 2007-04-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03562 MltA MltA specific insert domain
A PF06725 3D 3D domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 2pnwA01
2.40.240.50 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Barwin-like endoglucanases 2pnwA02
3M3GA 5H4UA 4AVRA 1BW3A 2GAEA 4L48A 3X2MA 1BW4A 4JP7A 3ENGA 3SUMA 4FG4A 3X2LA 4JS7A 3CZBA 3X2NA 2PNWA 3SULA 2PI8A 2BH0A 2PJJA 5GLXA 4JCWA 4JP6A 3X2KA 2ENGA 3X2PA 4ENGA 3X2HA 3X2OA 1OA9A 4FG2A 1OA7A 2KQAA 5GLYA 2AE0X 1WC2A 2G5DA 3X2JA 3SUJA 3SUKA 5GM9A 4ZM7A 2G6GA 1N10A 1L8FA 4FFTA 3X2IA 3X2GA 4FERA 1HD5A 3D30A 4JJOA 2HCZX 2PICA
chains in the Genus database with same CATH superfamily
5IZNA 4AVRA 4D7ZB 1AA6A 4AAYA 2ZJQS 4CRZA 1WLFA 1S3SA 2PMZA 3X2MA 3W2VB 1Q16A 4KDIA 5HL7S 1TWCA 2A6HD 3HU1A 2ZJRS 3GTGA 4QIWA 2PJJA 2WAQA 5DM6S 1Y1WA 1QRUA 2ENGA 1DMSA 1Y1VA 1E60A 4GA6A 3W2WB 1CZ4A 4FG2A 1OA7A 2KQAA 4AONB 2JA7A 3GTOA 1E61A 1Y5IA 2AE0X 2NVYA 5GAHW 1QRSA 1FDOA 2JIMA 1I3QA 3IR5A 3QQ8A 4FFTA 5DYGA 2JIRA 1KQFA 2VPWA 4GA5A 2YU9A 2A68D 4CS0A 2JA5A 4UY88 3X1LB 3PIPS 1Y4ZA 1R7RA 2NAPA 2PICA 1KQGA 1FEUA 5GLFA 3GTKA 1SMYD 5FTJA 4L69A 4L48A 4JP7A 1SFOA 3ENGA 2A6ED 1QDNA 4NOHA 3GTPA 1H5NA 1E18A 3CZBA 2PNWA 5GADW 2PI8A 3H0GA 4JXXA 5T5ID 3FKIA 4IOAS 1YNJD 4JP6A 3TIWA 1PQFA 1G8KA 1WCMA 1VC3B 4AOKB 4ENGA 4IO9S 3X2HA 5T5MD 3X2OA 3AIIA 4WCES 5B6CA 1OA9A 1PYQA 1QCSA 4WFAS 1B75A 4CRYG 2R7ZA 2VPYA 2V3VA 3X2JA 4C2MA 5FTNA 1D6KA 4ZM7A 1O0BA 2EEOB 3GTQA 4WFBS 2R92A 1FDIA 2E2HA 3QC8A 2VPXA 1ZC1A 3D30A 4JJOA 1QRTA 1UHDA 4KO8A 5FTLA 1YNND 1PQHA 3HU2A 5FTMA 3CQZA 5H4UA 1BW3A 1VHYA 2O5JD 2VUMA 4H3SA 3CF5S 1PYUB 2JIPA 4WFNS 4IOCS 4JYZA 3X2LA 2BE5D 2V45A 2E2IA 4AYBA 5GAGW 4JS7A 1R27A 3X2NA 3J7ZV 1NYLA 1EUQA 3SULA 3DLLS 1TWAA 2BH0A 1ZYRD 5GLXA 1OGYA 1SIWA 5EPPA 1TMOA 1CR5A 1H0HA 4KLNA 1G8JA 3GTLA 1Z85A 1VHKA 2HZ7A 2RD2A 4RV0A 1DMRA 1QTQA 2NWAA 2A69D 5DYIA 5GAEW 4WF9S 1AW8B 1PT1A 4AZDA 1I50A 2G5DA 2B63A 5GM9A 2G6GA 3TM7B 1L8FA 1TWHA 3KW2A 3HU3A 3X2GA 3ML1A 4V194 2HCZX 2JA6A 4H4KA 4P2BA 5BNZA 1IW7D 3M3GA 5C18A 1K83A 1DFUP 2GAEA 1YLEA 1E32A 1UHEA 1BW4A 1ZJWA 2Y0SA 3HKZA 4FG4A 1E5VA 2CW0D 2EGVA 2RE8A 3OUGA 1GTRA 3IR6A 1EUYA 4DMRA 3QWZA 3IR7A 2KI8A 2Z0YA 1PQEA 4JCWA 2JIOA 3QQ7A 3X2KA 3X2PA 1V6ZA 3PIOS 4J3CA 1R9TA 2IV2X 5JVHS 2NVXA 3O5AA 3DMRA 1UDXA 2CX8A 5C1BA 5GLYA 1CZ5A 4E8BA 5JVGS 1O0CA 1TWFA 3GTJA 2R93A 1TWGA 1GTSA 4JXZA 1WC2A 2PJHB 2E7ZA 2ZJPS 1PT0A 2C45A 2WB1A 1PPYA 3CF2A 3SUJA 4KODA 3GTMA 3SUKA 2EGWA 1EXDA 1N10A 2DMRA 2JIQA 3X2IA 4KDLA 2YUJA 3PLXB 4U67S 5DM7S 2VPZA 4FERA 1HD5A 5FTKA 1NXZA 3SUMA 1EU1A 2NYAA
chains in the Genus database with same CATH topology
4AVRA 4D7ZB 1AA6A 4AAYA 4CRZA 3X2MA 1S3SA 1WLFA 2PMZA 1Q16A 4KDIA 1TWCA 2A6HD 3HU1A 3GTGA 4QIWA 2PJJA 2WAQA 1Y1WA 2ENGA 1DMSA 1Y1VA 1E60A 4GA6A 1CZ4A 4FG2A 1OA7A 2KQAA 4AONB 2JA7A 3GTOA 1E61A 2AE0X 1Y5IA 2NVYA 1FDOA 2JIMA 1I3QA 3IR5A 3QQ8A 4FFTA 5DYGA 2JIRA 1KQFA 2VPWA 4GA5A 2YU9A 2A68D 4CS0A 2JA5A 1Y4ZA 1R7RA 2NAPA 2PICA 1KQGA 5GLFA 3GTKA 1SMYD 5FTJA 4L48A 4JP7A 1SFOA 3ENGA 2A6ED 1QDNA 4NOHA 3GTPA 1H5NA 3CZBA 1E18A 2PNWA 2PI8A 3H0GA 5T5ID 3FKIA 4JP6A 1YNJD 3TIWA 1PQFA 1G8KA 4ENGA 1VC3B 1WCMA 4AOKB 3X2HA 5T5MD 3X2OA 5B6CA 1OA9A 1PYQA 1QCSA 4CRYG 2R7ZA 2VPYA 2V3VA 3X2JA 4C2MA 5FTNA 4ZM7A 2EEOB 3GTQA 2R92A 1FDIA 2E2HA 3QC8A 2VPXA 1ZC1A 3D30A 4JJOA 1UHDA 4KO8A 5FTLA 5H4UA 1PQHA 1BW3A 1YNND 3CQZA 3HU2A 5FTMA 2O5JD 2VUMA 1PYUB 2JIPA 3X2LA 2BE5D 2V45A 2E2IA 4AYBA 4JS7A 3X2NA 1R27A 3SULA 2BH0A 1TWAA 1ZYRD 5GLXA 1OGYA 1SIWA 5EPPA 1TMOA 1CR5A 1H0HA 4KLNA 1G8JA 3GTLA 4RV0A 1DMRA 2A69D 5DYIA 1AW8B 1PT1A 4AZDA 1I50A 2G5DA 2B63A 5GM9A 2G6GA 3TM7B 1L8FA 1TWHA 3X2GA 3HU3A 3ML1A 2HCZX 2JA6A 1IW7D 3M3GA 5C18A 1K83A 2GAEA 1YLEA 1E32A 1UHEA 1BW4A 2Y0SA 4FG4A 3HKZA 1E5VA 2CW0D 3OUGA 3IR6A 4DMRA 3QWZA 3IR7A 2KI8A 1PQEA 4JCWA 3X2KA 2JIOA 3QQ7A 3X2PA 1R9TA 2IV2X 2NVXA 3O5AA 3DMRA 5C1BA 5GLYA 1CZ5A 1TWFA 3GTJA 2R93A 1TWGA 1WC2A 2PJHB 2E7ZA 1PT0A 2C45A 2WB1A 1PPYA 3CF2A 3SUJA 4KODA 3GTMA 3SUKA 1N10A 2DMRA 2JIQA 3X2IA 4KDLA 2YUJA 3PLXB 2VPZA 4FERA 1HD5A 5FTKA 3SUMA 1EU1A 2NYAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3M3G A;  5H4U A;  4AVR A;  1BW3 A;  2GAE A;  4L48 A;  3X2M A;  1BW4 A;  4JP7 A;  3ENG A;  3SUM A;  4FG4 A;  3X2L A;  4JS7 A;  3CZB A;  3X2N A;  2PNW A;  3SUL A;  2PI8 A;  2BH0 A;  2PJJ A;  5GLX A;  4JCW A;  4JP6 A;  3X2K A;  2ENG A;  3X2P A;  4ENG A;  3X2H A;  3X2O A;  1OA9 A;  4FG2 A;  1OA7 A;  2KQA A;  5GLY A;  2AE0 X;  1WC2 A;  2G5D A;  3X2J A;  3SUJ A;  3SUK A;  5GM9 A;  4ZM7 A;  2G6G A;  1N10 A;  1L8F A;  4FFT A;  3X2I A;  3X2G A;  4FER A;  1HD5 A;  3D30 A;  4JJO A;  2HCZ X;  2PIC A; 
#chains in the Genus database with same CATH topology
 5IZN A;  4AVR A;  4D7Z B;  1AA6 A;  4AAY A;  2ZJQ S;  4CRZ A;  1WLF A;  1S3S A;  2PMZ A;  3X2M A;  3W2V B;  1Q16 A;  4KDI A;  5HL7 S;  1TWC A;  2A6H D;  3HU1 A;  2ZJR S;  3GTG A;  4QIW A;  2PJJ A;  2WAQ A;  5DM6 S;  1Y1W A;  1QRU A;  2ENG A;  1DMS A;  1Y1V A;  1E60 A;  4GA6 A;  3W2W B;  1CZ4 A;  4FG2 A;  1OA7 A;  2KQA A;  4AON B;  2JA7 A;  3GTO A;  1E61 A;  1Y5I A;  2AE0 X;  2NVY A;  5GAH W;  1QRS A;  1FDO A;  2JIM A;  1I3Q A;  3IR5 A;  3QQ8 A;  4FFT A;  5DYG A;  2JIR A;  1KQF A;  2VPW A;  4GA5 A;  2YU9 A;  2A68 D;  4CS0 A;  2JA5 A;  4UY8 8;  3X1L B;  3PIP S;  1Y4Z A;  1R7R A;  2NAP A;  2PIC A;  1KQG A;  1FEU A;  5GLF A;  3GTK A;  1SMY D;  5FTJ A;  4L69 A;  4L48 A;  4JP7 A;  1SFO A;  3ENG A;  2A6E D;  1QDN A;  4NOH A;  3GTP A;  1H5N A;  1E18 A;  3CZB A;  2PNW A;  5GAD W;  2PI8 A;  3H0G A;  4JXX A;  5T5I D;  3FKI A;  4IOA S;  1YNJ D;  4JP6 A;  3TIW A;  1PQF A;  1G8K A;  1WCM A;  1VC3 B;  4AOK B;  4ENG A;  4IO9 S;  3X2H A;  5T5M D;  3X2O A;  3AII A;  4WCE S;  5B6C A;  1OA9 A;  1PYQ A;  1QCS A;  4WFA S;  1B75 A;  4CRY G;  2R7Z A;  2VPY A;  2V3V A;  3X2J A;  4C2M A;  5FTN A;  1D6K A;  4ZM7 A;  1O0B A;  2EEO B;  3GTQ A;  4WFB S;  2R92 A;  1FDI A;  2E2H A;  3QC8 A;  2VPX A;  1ZC1 A;  3D30 A;  4JJO A;  1QRT A;  1UHD A;  4KO8 A;  5FTL A;  1YNN D;  1PQH A;  3HU2 A;  5FTM A;  3CQZ A;  5H4U A;  1BW3 A;  1VHY A;  2O5J D;  2VUM A;  4H3S A;  3CF5 S;  1PYU B;  2JIP A;  4WFN S;  4IOC S;  4JYZ A;  3X2L A;  2BE5 D;  2V45 A;  2E2I A;  4AYB A;  5GAG W;  4JS7 A;  1R27 A;  3X2N A;  3J7Z V;  1NYL A;  1EUQ A;  3SUL A;  3DLL S;  1TWA A;  2BH0 A;  1ZYR D;  5GLX A;  1OGY A;  1SIW A;  5EPP A;  1TMO A;  1CR5 A;  1H0H A;  4KLN A;  1G8J A;  3GTL A;  1Z85 A;  1VHK A;  2HZ7 A;  2RD2 A;  4RV0 A;  1DMR A;  1QTQ A;  2NWA A;  2A69 D;  5DYI A;  5GAE W;  4WF9 S;  1AW8 B;  1PT1 A;  4AZD A;  1I50 A;  2G5D A;  2B63 A;  5GM9 A;  2G6G A;  3TM7 B;  1L8F A;  1TWH A;  3KW2 A;  3HU3 A;  3X2G A;  3ML1 A;  4V19 4;  2HCZ X;  2JA6 A;  4H4K A;  4P2B A;  5BNZ A;  1IW7 D;  3M3G A;  5C18 A;  1K83 A;  1DFU P;  2GAE A;  1YLE A;  1E32 A;  1UHE A;  1BW4 A;  1ZJW A;  2Y0S A;  3HKZ A;  4FG4 A;  1E5V A;  2CW0 D;  2EGV A;  2RE8 A;  3OUG A;  1GTR A;  3IR6 A;  1EUY A;  4DMR A;  3QWZ A;  3IR7 A;  2KI8 A;  2Z0Y A;  1PQE A;  4JCW A;  2JIO A;  3QQ7 A;  3X2K A;  3X2P A;  1V6Z A;  3PIO S;  4J3C A;  1R9T A;  2IV2 X;  5JVH S;  2NVX A;  3O5A A;  3DMR A;  1UDX A;  2CX8 A;  5C1B A;  5GLY A;  1CZ5 A;  4E8B A;  5JVG S;  1O0C A;  1TWF A;  3GTJ A;  2R93 A;  1TWG A;  1GTS A;  4JXZ A;  1WC2 A;  2PJH B;  2E7Z A;  2ZJP S;  1PT0 A;  2C45 A;  2WB1 A;  1PPY A;  3CF2 A;  3SUJ A;  4KOD A;  3GTM A;  3SUK A;  2EGW A;  1EXD A;  1N10 A;  2DMR A;  2JIQ A;  3X2I A;  4KDL A;  2YUJ A;  3PLX B;  4U67 S;  5DM7 S;  2VPZ A;  4FER A;  1HD5 A;  5FTK A;  1NXZ A;  3SUM A;  1EU1 A;  2NYA A; 
#chains in the Genus database with same CATH homology
 4AVR A;  4D7Z B;  1AA6 A;  4AAY A;  4CRZ A;  3X2M A;  1S3S A;  1WLF A;  2PMZ A;  1Q16 A;  4KDI A;  1TWC A;  2A6H D;  3HU1 A;  3GTG A;  4QIW A;  2PJJ A;  2WAQ A;  1Y1W A;  2ENG A;  1DMS A;  1Y1V A;  1E60 A;  4GA6 A;  1CZ4 A;  4FG2 A;  1OA7 A;  2KQA A;  4AON B;  2JA7 A;  3GTO A;  1E61 A;  2AE0 X;  1Y5I A;  2NVY A;  1FDO A;  2JIM A;  1I3Q A;  3IR5 A;  3QQ8 A;  4FFT A;  5DYG A;  2JIR A;  1KQF A;  2VPW A;  4GA5 A;  2YU9 A;  2A68 D;  4CS0 A;  2JA5 A;  1Y4Z A;  1R7R A;  2NAP A;  2PIC A;  1KQG A;  5GLF A;  3GTK A;  1SMY D;  5FTJ A;  4L48 A;  4JP7 A;  1SFO A;  3ENG A;  2A6E D;  1QDN A;  4NOH A;  3GTP A;  1H5N A;  3CZB A;  1E18 A;  2PNW A;  2PI8 A;  3H0G A;  5T5I D;  3FKI A;  4JP6 A;  1YNJ D;  3TIW A;  1PQF A;  1G8K A;  4ENG A;  1VC3 B;  1WCM A;  4AOK B;  3X2H A;  5T5M D;  3X2O A;  5B6C A;  1OA9 A;  1PYQ A;  1QCS A;  4CRY G;  2R7Z A;  2VPY A;  2V3V A;  3X2J A;  4C2M A;  5FTN A;  4ZM7 A;  2EEO B;  3GTQ A;  2R92 A;  1FDI A;  2E2H A;  3QC8 A;  2VPX A;  1ZC1 A;  3D30 A;  4JJO A;  1UHD A;  4KO8 A;  5FTL A;  5H4U A;  1PQH A;  1BW3 A;  1YNN D;  3CQZ A;  3HU2 A;  5FTM A;  2O5J D;  2VUM A;  1PYU B;  2JIP A;  3X2L A;  2BE5 D;  2V45 A;  2E2I A;  4AYB A;  4JS7 A;  3X2N A;  1R27 A;  3SUL A;  2BH0 A;  1TWA A;  1ZYR D;  5GLX A;  1OGY A;  1SIW A;  5EPP A;  1TMO A;  1CR5 A;  1H0H A;  4KLN A;  1G8J A;  3GTL A;  4RV0 A;  1DMR A;  2A69 D;  5DYI A;  1AW8 B;  1PT1 A;  4AZD A;  1I50 A;  2G5D A;  2B63 A;  5GM9 A;  2G6G A;  3TM7 B;  1L8F A;  1TWH A;  3X2G A;  3HU3 A;  3ML1 A;  2HCZ X;  2JA6 A;  1IW7 D;  3M3G A;  5C18 A;  1K83 A;  2GAE A;  1YLE A;  1E32 A;  1UHE A;  1BW4 A;  2Y0S A;  4FG4 A;  3HKZ A;  1E5V A;  2CW0 D;  3OUG A;  3IR6 A;  4DMR A;  3QWZ A;  3IR7 A;  2KI8 A;  1PQE A;  4JCW A;  3X2K A;  2JIO A;  3QQ7 A;  3X2P A;  1R9T A;  2IV2 X;  2NVX A;  3O5A A;  3DMR A;  5C1B A;  5GLY A;  1CZ5 A;  1TWF A;  3GTJ A;  2R93 A;  1TWG A;  1WC2 A;  2PJH B;  2E7Z A;  1PT0 A;  2C45 A;  2WB1 A;  1PPY A;  3CF2 A;  3SUJ A;  4KOD A;  3GTM A;  3SUK A;  1N10 A;  2DMR A;  2JIQ A;  3X2I A;  4KDL A;  2YUJ A;  3PLX B;  2VPZ A;  4FER A;  1HD5 A;  5FTK A;  3SUM A;  1EU1 A;  2NYA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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