2PNWA

Crystal structure of membrane-bound lytic murein transglycosylase from agrobacterium tumefaciens
Total Genus 101
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
101
sequence length
365
structure length
354
Chain Sequence
FSIDEVSFRDLPGWGQDDPRKLFPAMATILSHLRNAKPYRTGALGITAAELVSLLELAERGQVNSPEQARQFFETNSVPFRISPSGFVTAFYEPELEVSATPDDVWRYPIYRRPPELVDIDNDNRPDGFDPSYAFGKADEEGISYFPDRRAIDEGCLRGRGLEIAWARSKVDLFFVHVQGAARLVFPDGAIKRITYAAKAGHVFSPIGRLLLDRGELDPKTISMQTIRQWLADHPDEVDGVLWHNRSYIFFREAGPIAAAKVPLVAGRALAVDRLIHTFGLPFFIHAPTLTHLDDGKPFARLMLALDTGSAIVGPARGDIFTGSGFEAGELAGTVRNEADFYILLPRIAAERYR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of membrane-bound lytic murein transglycosylase from Agrobacterium tumefaciens.
rcsb
source organism Agrobacterium tumefaciens str.
molecule tags Hydrolase
molecule keywords Membrane-bound lytic murein transglycosylase
total genus 101
structure length 354
sequence length 365
ec nomenclature
pdb deposition date 2007-04-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03562 MltA MltA specific insert domain
A PF06725 3D 3D domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 2pnwA01
2.40.240.50 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Barwin-like endoglucanases 2pnwA02
3X2KA 2G5DA 3SUMA 3SUJA 3ENGA 2PI8A 2G6GA 2BH0A 3X2IA 3X2LA 4JP7A 3X2GA 3SUKA 2AE0X 5GM9A 2PNWA 3X2HA 3X2OA 4AVRA 2HCZX 4FG4A 3SULA 3X2MA 1BW3A 1HD5A 2PICA 1OA9A 4JS7A 2GAEA 4FG2A 4JP6A 1BW4A 5GLXA 3X2PA 3X2NA 4ENGA 4FFTA 4ZM7A 1N10A 3CZBA 5H4UA 3D30A 1OA7A 2PJJA 5GLYA 4JCWA 2KQAA 4L48A 3X2JA 1L8FA 1WC2A 3M3GA 2ENGA 4JJOA 4FERA
chains in the Genus database with same CATH superfamily
1FDOA 4WFNS 2CX8A 3ENGA 1TWGA 3GTOA 3FKIA 1PT1A 4KO8A 3CF5S 1PT0A 1YNJD 2PJHB 5FTKA 3X1LB 5GM9A 2B63A 1WCMA 3SULA 1NYLA 2E2HA 3HU1A 4WCES 3DMRA 2PICA 3CF2A 3QWZA 2JA6A 1TWAA 1PPYA 2C45A 4GA5A 3TM7B 1BW4A 1QRUA 4H3SA 4P2BA 1UDXA 5C1BA 4QIWA 5GAEW 1TWCA 1ZYRD 2Z0YA 1YLEA 3HKZA 5FTMA 5H4UA 4E8BA 4L48A 2NAPA 4CS0A 4AZDA 2IV2X 1OGYA 1L8FA 1WC2A 3IR7A 5IZNA 1EUYA 1TWHA 2VPWA 1YNND 2HZ7A 3KW2A 2G5DA 4CRYG 2CW0D 2PMZA 3SUJA 2E7ZA 1B75A 2PI8A 5C18A 3TIWA 1EXDA 1QRSA 1G8JA 3X2IA 2R92A 2BE5D 2R7ZA 5FTNA 1K83A 2WAQA 2JIRA 1PQHA 3HU3A 3H0GA 2WB1A 3X2OA 1QDNA 4FG4A 2VUMA 2O5JD 3IR6A 5FTLA 5FTJA 1OA9A 4CRZA 4H4KA 1G8KA 2GAEA 3PLXB 1FDIA 5GLFA 5GAGW 5GADW 4JP6A 1QRTA 1QCSA 4IOAS 5DYIA 2Y0SA 3HU2A 4AAYA 3X2NA 4ENGA 1KQGA 3O5AA 1IW7D 4FFTA 2EGWA 4ZM7A 2NWAA 4IOCS 1GTRA 3CZBA 4U67S 3X2JA 2RE8A 1AA6A 4JCWA 4NOHA 1D6KA 1Y4ZA 3QQ7A 1Y1VA 1TWFA 4WFAS 4KDLA 2ZJQS 5HL7S 4WFBS 2A6ED 4KLNA 3X2KA 3SUMA 3QC8A 1PQEA 3GTQA 1QTQA 1DMRA 2A69D 1UHEA 2A68D 1ZC1A 5B6CA 5DM7S 5JVHS 2E2IA 4D7ZB 3X2LA 4JP7A 1E61A 1NXZA 1CZ4A 2ZJRS 2AE0X 2PNWA 3X2HA 4AVRA 1O0BA 1BW3A 1CZ5A 3GTJA 1HD5A 3GTMA 2R93A 2EGVA 3DLLS 2DMRA 3PIPS 2VPYA 1E32A 4V194 3CQZA 2EEOB 1PYUB 4AONB 1H5NA 5DM6S 4JXXA 1AW8B 3OUGA 4UY88 2RD2A 3PIOS 4J3CA 1GTSA 2KI8A 3D30A 4AYBA 1I3QA 4L69A 4JYZA 1E5VA 1DMSA 1WLFA 2VPZA 1Y1WA 3M3GA 2ENGA 1VC3B 1H0HA 4JJOA 4JS7A 4FERA 4DMRA 2JA7A 1E60A 1Z85A 5BNZA 2ZJPS 4JXZA 1SFOA 1PYQA 5JVGS 4GA6A 1R9TA 2G6GA 2BH0A 2NVXA 4C2MA 1EU1A 5EPPA 3X2GA 4IO9S 2VPXA 1DFUP 2JIOA 1Y5IA 2NYAA 3QQ8A 3SUKA 5GAHW 1Q16A 5DYGA 2HCZX 2JIMA 2YU9A 2V3VA 2JIQA 5T5ID 3X2MA 1SMYD 5T5MD 3AIIA 1VHYA 4FG2A 1TMOA 1O0CA 1EUQA 3ML1A 2NVYA 1CR5A 1V6ZA 1ZJWA 1SIWA 2YUJA 5GLXA 3GTGA 1UHDA 3X2PA 3GTKA 4KDIA 3J7ZV 2JIPA 2A6HD 2JA5A 1FEUA 1N10A 3W2VB 1OA7A 1E18A 2PJJA 5GLYA 2KQAA 1I50A 4AOKB 4WF9S 1S3SA 4RV0A 4KODA 3GTLA 1PQFA 1R7RA 1R27A 3GTPA 1VHKA 1KQFA 2V45A 3IR5A 3W2WB
chains in the Genus database with same CATH topology
1FDOA 3ENGA 1TWGA 3GTOA 3FKIA 1PT1A 4KO8A 1PT0A 1YNJD 2PJHB 5FTKA 5GM9A 2B63A 1WCMA 3SULA 2E2HA 3HU1A 3DMRA 2PICA 3CF2A 3QWZA 2JA6A 1TWAA 1PPYA 2C45A 4GA5A 3TM7B 1BW4A 5C1BA 4QIWA 1TWCA 1ZYRD 1YLEA 3HKZA 5FTMA 5H4UA 4L48A 2NAPA 4CS0A 4AZDA 2IV2X 1OGYA 1L8FA 1WC2A 3IR7A 1TWHA 2VPWA 1YNND 2G5DA 4CRYG 2CW0D 2PMZA 3SUJA 2E7ZA 2PI8A 5C18A 3TIWA 1G8JA 3X2IA 2R92A 2BE5D 2R7ZA 5FTNA 1K83A 2WAQA 2JIRA 1PQHA 3HU3A 3X2OA 2WB1A 3H0GA 1QDNA 4FG4A 2VUMA 2O5JD 3IR6A 5FTLA 5FTJA 1OA9A 4CRZA 2GAEA 1G8KA 3PLXB 1FDIA 5GLFA 4JP6A 1QCSA 5DYIA 2Y0SA 3HU2A 4AAYA 3X2NA 4ENGA 1KQGA 3O5AA 1IW7D 4FFTA 4ZM7A 3CZBA 3X2JA 1AA6A 4JCWA 4NOHA 1Y4ZA 3QQ7A 1Y1VA 1TWFA 4KDLA 2A6ED 3X2KA 4KLNA 3SUMA 3QC8A 1PQEA 3GTQA 1DMRA 2A69D 1UHEA 2A68D 1ZC1A 5B6CA 2E2IA 4D7ZB 3X2LA 4JP7A 1E61A 1CZ4A 2AE0X 2PNWA 3X2HA 4AVRA 1BW3A 1CZ5A 3GTJA 1HD5A 3GTMA 2R93A 2DMRA 2VPYA 1E32A 3CQZA 2EEOB 1PYUB 4AONB 1H5NA 1AW8B 3OUGA 2KI8A 3D30A 4AYBA 1I3QA 1E5VA 1DMSA 1WLFA 2VPZA 1Y1WA 3M3GA 2ENGA 1H0HA 4JS7A 4JJOA 1VC3B 4FERA 4DMRA 2JA7A 1E60A 1SFOA 1PYQA 4GA6A 1R9TA 2G6GA 2BH0A 2NVXA 4C2MA 1EU1A 3X2GA 5EPPA 2VPXA 2JIOA 1Y5IA 3SUKA 2NYAA 3QQ8A 1Q16A 5DYGA 2HCZX 2JIMA 2YU9A 2V3VA 3X2MA 2JIQA 5T5ID 1SMYD 5T5MD 4FG2A 1TMOA 3ML1A 2NVYA 1CR5A 1SIWA 5GLXA 2YUJA 3GTGA 3X2PA 1UHDA 3GTKA 4KDIA 2JIPA 2A6HD 2JA5A 1N10A 1OA7A 2PJJA 5GLYA 1E18A 2KQAA 1I50A 4AOKB 1S3SA 4RV0A 4KODA 3GTLA 1PQFA 1R7RA 1R27A 3GTPA 1KQFA 2V45A 3IR5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3X2K A;  2G5D A;  3SUM A;  3SUJ A;  3ENG A;  2PI8 A;  2G6G A;  2BH0 A;  3X2I A;  3X2L A;  4JP7 A;  3X2G A;  3SUK A;  2AE0 X;  5GM9 A;  2PNW A;  3X2H A;  3X2O A;  4AVR A;  2HCZ X;  4FG4 A;  3SUL A;  3X2M A;  1BW3 A;  1HD5 A;  2PIC A;  1OA9 A;  4JS7 A;  2GAE A;  4FG2 A;  4JP6 A;  1BW4 A;  5GLX A;  3X2P A;  3X2N A;  4ENG A;  4FFT A;  4ZM7 A;  1N10 A;  3CZB A;  5H4U A;  3D30 A;  1OA7 A;  2PJJ A;  5GLY A;  4JCW A;  2KQA A;  4L48 A;  3X2J A;  1L8F A;  1WC2 A;  3M3G A;  2ENG A;  4JJO A;  4FER A; 
#chains in the Genus database with same CATH topology
 1FDO A;  4WFN S;  2CX8 A;  3ENG A;  1TWG A;  3GTO A;  3FKI A;  1PT1 A;  4KO8 A;  3CF5 S;  1PT0 A;  1YNJ D;  2PJH B;  5FTK A;  3X1L B;  5GM9 A;  2B63 A;  1WCM A;  3SUL A;  1NYL A;  2E2H A;  3HU1 A;  4WCE S;  3DMR A;  2PIC A;  3CF2 A;  3QWZ A;  2JA6 A;  1TWA A;  1PPY A;  2C45 A;  4GA5 A;  3TM7 B;  1BW4 A;  1QRU A;  4H3S A;  4P2B A;  1UDX A;  5C1B A;  4QIW A;  5GAE W;  1TWC A;  1ZYR D;  2Z0Y A;  1YLE A;  3HKZ A;  5FTM A;  5H4U A;  4E8B A;  4L48 A;  2NAP A;  4CS0 A;  4AZD A;  2IV2 X;  1OGY A;  1L8F A;  1WC2 A;  3IR7 A;  5IZN A;  1EUY A;  1TWH A;  2VPW A;  1YNN D;  2HZ7 A;  3KW2 A;  2G5D A;  4CRY G;  2CW0 D;  2PMZ A;  3SUJ A;  2E7Z A;  1B75 A;  2PI8 A;  5C18 A;  3TIW A;  1EXD A;  1QRS A;  1G8J A;  3X2I A;  2R92 A;  2BE5 D;  2R7Z A;  5FTN A;  1K83 A;  2WAQ A;  2JIR A;  1PQH A;  3HU3 A;  3H0G A;  2WB1 A;  3X2O A;  1QDN A;  4FG4 A;  2VUM A;  2O5J D;  3IR6 A;  5FTL A;  5FTJ A;  1OA9 A;  4CRZ A;  4H4K A;  1G8K A;  2GAE A;  3PLX B;  1FDI A;  5GLF A;  5GAG W;  5GAD W;  4JP6 A;  1QRT A;  1QCS A;  4IOA S;  5DYI A;  2Y0S A;  3HU2 A;  4AAY A;  3X2N A;  4ENG A;  1KQG A;  3O5A A;  1IW7 D;  4FFT A;  2EGW A;  4ZM7 A;  2NWA A;  4IOC S;  1GTR A;  3CZB A;  4U67 S;  3X2J A;  2RE8 A;  1AA6 A;  4JCW A;  4NOH A;  1D6K A;  1Y4Z A;  3QQ7 A;  1Y1V A;  1TWF A;  4WFA S;  4KDL A;  2ZJQ S;  5HL7 S;  4WFB S;  2A6E D;  4KLN A;  3X2K A;  3SUM A;  3QC8 A;  1PQE A;  3GTQ A;  1QTQ A;  1DMR A;  2A69 D;  1UHE A;  2A68 D;  1ZC1 A;  5B6C A;  5DM7 S;  5JVH S;  2E2I A;  4D7Z B;  3X2L A;  4JP7 A;  1E61 A;  1NXZ A;  1CZ4 A;  2ZJR S;  2AE0 X;  2PNW A;  3X2H A;  4AVR A;  1O0B A;  1BW3 A;  1CZ5 A;  3GTJ A;  1HD5 A;  3GTM A;  2R93 A;  2EGV A;  3DLL S;  2DMR A;  3PIP S;  2VPY A;  1E32 A;  4V19 4;  3CQZ A;  2EEO B;  1PYU B;  4AON B;  1H5N A;  5DM6 S;  4JXX A;  1AW8 B;  3OUG A;  4UY8 8;  2RD2 A;  3PIO S;  4J3C A;  1GTS A;  2KI8 A;  3D30 A;  4AYB A;  1I3Q A;  4L69 A;  4JYZ A;  1E5V A;  1DMS A;  1WLF A;  2VPZ A;  1Y1W A;  3M3G A;  2ENG A;  1VC3 B;  1H0H A;  4JJO A;  4JS7 A;  4FER A;  4DMR A;  2JA7 A;  1E60 A;  1Z85 A;  5BNZ A;  2ZJP S;  4JXZ A;  1SFO A;  1PYQ A;  5JVG S;  4GA6 A;  1R9T A;  2G6G A;  2BH0 A;  2NVX A;  4C2M A;  1EU1 A;  5EPP A;  3X2G A;  4IO9 S;  2VPX A;  1DFU P;  2JIO A;  1Y5I A;  2NYA A;  3QQ8 A;  3SUK A;  5GAH W;  1Q16 A;  5DYG A;  2HCZ X;  2JIM A;  2YU9 A;  2V3V A;  2JIQ A;  5T5I D;  3X2M A;  1SMY D;  5T5M D;  3AII A;  1VHY A;  4FG2 A;  1TMO A;  1O0C A;  1EUQ A;  3ML1 A;  2NVY A;  1CR5 A;  1V6Z A;  1ZJW A;  1SIW A;  2YUJ A;  5GLX A;  3GTG A;  1UHD A;  3X2P A;  3GTK A;  4KDI A;  3J7Z V;  2JIP A;  2A6H D;  2JA5 A;  1FEU A;  1N10 A;  3W2V B;  1OA7 A;  1E18 A;  2PJJ A;  5GLY A;  2KQA A;  1I50 A;  4AOK B;  4WF9 S;  1S3S A;  4RV0 A;  4KOD A;  3GTL A;  1PQF A;  1R7R A;  1R27 A;  3GTP A;  1VHK A;  1KQF A;  2V45 A;  3IR5 A;  3W2W B; 
#chains in the Genus database with same CATH homology
 1FDO A;  3ENG A;  1TWG A;  3GTO A;  3FKI A;  1PT1 A;  4KO8 A;  1PT0 A;  1YNJ D;  2PJH B;  5FTK A;  5GM9 A;  2B63 A;  1WCM A;  3SUL A;  2E2H A;  3HU1 A;  3DMR A;  2PIC A;  3CF2 A;  3QWZ A;  2JA6 A;  1TWA A;  1PPY A;  2C45 A;  4GA5 A;  3TM7 B;  1BW4 A;  5C1B A;  4QIW A;  1TWC A;  1ZYR D;  1YLE A;  3HKZ A;  5FTM A;  5H4U A;  4L48 A;  2NAP A;  4CS0 A;  4AZD A;  2IV2 X;  1OGY A;  1L8F A;  1WC2 A;  3IR7 A;  1TWH A;  2VPW A;  1YNN D;  2G5D A;  4CRY G;  2CW0 D;  2PMZ A;  3SUJ A;  2E7Z A;  2PI8 A;  5C18 A;  3TIW A;  1G8J A;  3X2I A;  2R92 A;  2BE5 D;  2R7Z A;  5FTN A;  1K83 A;  2WAQ A;  2JIR A;  1PQH A;  3HU3 A;  3X2O A;  2WB1 A;  3H0G A;  1QDN A;  4FG4 A;  2VUM A;  2O5J D;  3IR6 A;  5FTL A;  5FTJ A;  1OA9 A;  4CRZ A;  2GAE A;  1G8K A;  3PLX B;  1FDI A;  5GLF A;  4JP6 A;  1QCS A;  5DYI A;  2Y0S A;  3HU2 A;  4AAY A;  3X2N A;  4ENG A;  1KQG A;  3O5A A;  1IW7 D;  4FFT A;  4ZM7 A;  3CZB A;  3X2J A;  1AA6 A;  4JCW A;  4NOH A;  1Y4Z A;  3QQ7 A;  1Y1V A;  1TWF A;  4KDL A;  2A6E D;  3X2K A;  4KLN A;  3SUM A;  3QC8 A;  1PQE A;  3GTQ A;  1DMR A;  2A69 D;  1UHE A;  2A68 D;  1ZC1 A;  5B6C A;  2E2I A;  4D7Z B;  3X2L A;  4JP7 A;  1E61 A;  1CZ4 A;  2AE0 X;  2PNW A;  3X2H A;  4AVR A;  1BW3 A;  1CZ5 A;  3GTJ A;  1HD5 A;  3GTM A;  2R93 A;  2DMR A;  2VPY A;  1E32 A;  3CQZ A;  2EEO B;  1PYU B;  4AON B;  1H5N A;  1AW8 B;  3OUG A;  2KI8 A;  3D30 A;  4AYB A;  1I3Q A;  1E5V A;  1DMS A;  1WLF A;  2VPZ A;  1Y1W A;  3M3G A;  2ENG A;  1H0H A;  4JS7 A;  4JJO A;  1VC3 B;  4FER A;  4DMR A;  2JA7 A;  1E60 A;  1SFO A;  1PYQ A;  4GA6 A;  1R9T A;  2G6G A;  2BH0 A;  2NVX A;  4C2M A;  1EU1 A;  3X2G A;  5EPP A;  2VPX A;  2JIO A;  1Y5I A;  3SUK A;  2NYA A;  3QQ8 A;  1Q16 A;  5DYG A;  2HCZ X;  2JIM A;  2YU9 A;  2V3V A;  3X2M A;  2JIQ A;  5T5I D;  1SMY D;  5T5M D;  4FG2 A;  1TMO A;  3ML1 A;  2NVY A;  1CR5 A;  1SIW A;  5GLX A;  2YUJ A;  3GTG A;  3X2P A;  1UHD A;  3GTK A;  4KDI A;  2JIP A;  2A6H D;  2JA5 A;  1N10 A;  1OA7 A;  2PJJ A;  5GLY A;  1E18 A;  2KQA A;  1I50 A;  4AOK B;  1S3S A;  4RV0 A;  4KOD A;  3GTL A;  1PQF A;  1R7R A;  1R27 A;  3GTP A;  1KQF A;  2V45 A;  3IR5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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