2PNWA

Crystal structure of membrane-bound lytic murein transglycosylase from agrobacterium tumefaciens
Total Genus 101
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
101
sequence length
365
structure length
354
Chain Sequence
b'FSIDEVSFRDLPGWGQDDPRKLFPAMATILSHLRNAKPYRTGALGITAAELVSLLELAERGQVNSPEQARQFFETNSVPFRISPSGFVTAFYEPELEVSATPDDVWRYPIYRRPPELVDIDNDNRPDGFDPSYAFGKADEEGISYFPDRRAIDEGCLRGRGLEIAWARSKVDLFFVHVQGAARLVFPDGAIKRITYAAKAGHVFSPIGRLLLDRGELDPKTISMQTIRQWLADHPDEVDGVLWHNRSYIFFREAGPIAAAKVPLVAGRALAVDRLIHTFGLPFFIHAPTLTHLDDGKPFARLMLALDTGSAIVGPARGDIFTGSGFEAGELAGTVRNEADFYILLPRIAAERYR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Membrane-bound lytic murein transglycosylase
publication title Crystal structure of membrane-bound lytic murein transglycosylase from Agrobacterium tumefaciens.
rcsb
source organism Agrobacterium tumefaciens str.
molecule tags Hydrolase
total genus 101
structure length 354
sequence length 365
ec nomenclature
pdb deposition date 2007-04-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03562 MltA MltA specific insert domain
A PF06725 3D 3D domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 2pnwA01
2.40.240.50 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Barwin-like endoglucanases 2pnwA02
2PI8A 5GLXA 3CZBA 1HD5A 3SUMA 2KQAA 1N10A 3X2PA 5GLYA 3D30A 3SUKA 3SUJA 2G5DA 4JS7A 5GM9A 1WC2A 3X2HA 3X2OA 3ENGA 4JCWA 2HCZX 3X2IA 4FFTA 3X2JA 4FERA 4ENGA 3X2KA 3SULA 2BH0A 2ENGA 4FG2A 1OA9A 3X2NA 4JJOA 3X2LA 2G6GA 4L48A 3X2GA 4JP7A 1BW3A 1L8FA 1OA7A 3M3GA 2GAEA 2PICA 1BW4A 5H4UA 4AVRA 2PNWA 2PJJA 2AE0X 3X2MA 4FG4A 4ZM7A 4JP6A
chains in the Genus database with same CATH superfamily
5DYGA 3SUMA 4UY88 1EUYA 4V194 2NAPA 1QRSA 5DM7S 2JIMA 1GTRA 4DMRA 2JA6A 3HU3A 4KDLA 1VC3B 5FTNA 1QTQA 5FTJA 3TM7B 3DLLS 2A68D 4IOCS 1YLEA 2HCZX 1S3SA 5JVHS 3GTKA 1E61A 1FDOA 1CZ4A 1E32A 3X2KA 5FTKA 5EPPA 5GAEW 1KQGA 1DMSA 3GTLA 4L69A 1OA9A 3TIWA 4AOKB 2PMZA 3GTPA 1Z85A 1QCSA 3IR5A 4J3CA 2O5JD 4CRYG 1OA7A 3H0GA 3W2WB 2PICA 2WB1A 1DMRA 1PQEA 1UHDA 4AVRA 1Y4ZA 1QRUA 4QIWA 1ZC1A 5B6CA 4P2BA 1PQFA 2VPYA 3QWZA 5GAHW 4U67S 1I50A 2PI8A 3CZBA 1YNND 2KQAA 5GADW 3FKIA 1EU1A 5GLYA 3D30A 2E2HA 1O0CA 3IR7A 3SUJA 1NYLA 2ZJRS 5T5MD 4C2MA 2VPZA 1PT1A 1Q16A 2E7ZA 3HU2A 4AONB 4IOAS 3X2OA 1PT0A 4JCWA 1R7RA 5C18A 2JA5A 3W2VB 3X2IA 4WFBS 4WCES 3X2JA 3O5AA 4AZDA 4AAYA 1EUQA 2C45A 2YU9A 1DFUP 3HU1A 2VPWA 5HL7S 2RE8A 2EGWA 2ENGA 3GTQA 2Y0SA 1ZYRD 5DM6S 2RD2A 4JP7A 1BW3A 1PQHA 1FDIA 2B63A 1VHYA 2HZ7A 1CZ5A 1OGYA 1G8KA 1EXDA 4H3SA 1Y5IA 3DMRA 4GA5A 1AA6A 1ZJWA 1PYQA 2JA7A 2KI8A 2NVYA 1WLFA 5H4UA 1SFOA 5GLFA 4JXZA 4ZM7A 2A69D 4JP6A 3KW2A 1QRTA 2R92A 2YUJA 3CF2A 3GTOA 4JXXA 4KO8A 1N10A 2JIRA 4RV0A 1GTSA 3X1LB 4KDIA 2IV2X 2E2IA 3QQ8A 1KQFA 2NWAA 4JS7A 5GM9A 1WC2A 1O0BA 4FFTA 1SMYD 1AW8B 1UHEA 2A6ED 4FERA 1UDXA 4WFNS 3IR6A 1PPYA 4AYBA 1CR5A 4NOHA 2BH0A 3HKZA 2Z0YA 3X2NA 4JJOA 3X2LA 5FTMA 5C1BA 2VUMA 2G6GA 4L48A 3OUGA 3X2GA 4H4KA 5IZNA 1L8FA 3GTGA 1Y1WA 4CS0A 3M3GA 1D6KA 1TWAA 1H0HA 4D7ZB 3AIIA 3ML1A 2NYAA 2ZJQS 1BW4A 1R9TA 2WAQA 2PJJA 2AE0X 1Y1VA 4JYZA 1PYUB 2JIOA 3CQZA 4FG4A 3X2MA 4E8BA 1H5NA 5T5ID 5GLXA 1TWCA 1HD5A 1FEUA 2JIPA 3GTJA 3X2PA 4CRZA 3SUKA 4IO9S 2G5DA 1QDNA 1IW7D 2JIQA 1K83A 2PJHB 2V3VA 3X2HA 2CX8A 3QC8A 1TWGA 3ENGA 4WFAS 5BNZA 2NVXA 1G8JA 2R7ZA 3J7ZV 4GA6A 1E18A 1TWFA 2V45A 4ENGA 1TMOA 3SULA 3PIOS 1YNJD 4FG2A 5FTLA 1WCMA 2A6HD 2DMRA 2R93A 4KODA 1V6ZA 1E60A 5JVGS 5DYIA 1SIWA 2CW0D 3CF5S 1TWHA 2BE5D 2GAEA 4KLNA 1B75A 1I3QA 3PLXB 3PIPS 2ZJPS 2EEOB 2PNWA 3GTMA 1E5VA 2EGVA 5GAGW 4WF9S 1NXZA 1R27A 3QQ7A 2VPXA 1VHKA
chains in the Genus database with same CATH topology
5DYGA 3SUMA 2NAPA 2JIMA 4DMRA 2JA6A 3HU3A 4KDLA 1VC3B 5FTNA 5FTJA 3TM7B 2A68D 1YLEA 2HCZX 1S3SA 3GTKA 1E61A 1CZ4A 1FDOA 1E32A 3X2KA 5FTKA 5EPPA 1KQGA 1DMSA 3GTLA 1OA9A 3TIWA 4AOKB 2PMZA 3GTPA 1QCSA 3IR5A 2O5JD 4CRYG 1OA7A 3H0GA 2PICA 2WB1A 1DMRA 1PQEA 1UHDA 4AVRA 1Y4ZA 4QIWA 1ZC1A 5B6CA 1PQFA 2VPYA 3QWZA 1I50A 2PI8A 3CZBA 1YNND 2KQAA 3FKIA 1EU1A 5GLYA 3D30A 2E2HA 3SUJA 3IR7A 5T5MD 4C2MA 2VPZA 1PT1A 1Q16A 2E7ZA 3HU2A 4AONB 3X2OA 4JCWA 1PT0A 1R7RA 5C18A 2JA5A 3X2IA 3X2JA 3O5AA 4AZDA 4AAYA 2C45A 2YU9A 3HU1A 2VPWA 2ENGA 3GTQA 2Y0SA 1ZYRD 4JP7A 1BW3A 1PQHA 1FDIA 2B63A 1CZ5A 1OGYA 1G8KA 1Y5IA 3DMRA 4GA5A 1AA6A 1PYQA 2JA7A 2KI8A 2NVYA 5H4UA 1WLFA 1SFOA 5GLFA 4ZM7A 2A69D 4JP6A 2R92A 2YUJA 3CF2A 3GTOA 4KO8A 1N10A 2JIRA 4RV0A 4KDIA 2IV2X 2E2IA 3QQ8A 1KQFA 4JS7A 5GM9A 1WC2A 4FFTA 1SMYD 1AW8B 1UHEA 4FERA 2A6ED 3IR6A 1PPYA 4AYBA 1CR5A 4NOHA 2BH0A 3HKZA 3X2NA 4JJOA 3X2LA 5FTMA 5C1BA 2VUMA 2G6GA 4L48A 3X2GA 3OUGA 1L8FA 3GTGA 1Y1WA 4CS0A 3M3GA 1TWAA 1H0HA 4D7ZB 3ML1A 2NYAA 1BW4A 1R9TA 2WAQA 2PJJA 2AE0X 1Y1VA 1PYUB 3X2MA 4FG4A 2JIOA 3CQZA 1H5NA 5T5ID 5GLXA 1TWCA 1HD5A 2JIPA 3GTJA 3X2PA 4CRZA 3SUKA 2G5DA 1QDNA 1IW7D 2JIQA 1K83A 2PJHB 2V3VA 3X2HA 3QC8A 3ENGA 1TWGA 2NVXA 1G8JA 2R7ZA 4GA6A 1E18A 4ENGA 1TWFA 2V45A 1TMOA 3SULA 1YNJD 4FG2A 5FTLA 1WCMA 2A6HD 2DMRA 2R93A 4KODA 1E60A 5DYIA 1SIWA 2CW0D 1TWHA 2BE5D 2GAEA 4KLNA 1I3QA 3PLXB 2EEOB 2PNWA 3GTMA 1E5VA 1R27A 3QQ7A 2VPXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PI8 A;  5GLX A;  3CZB A;  1HD5 A;  3SUM A;  2KQA A;  1N10 A;  3X2P A;  5GLY A;  3D30 A;  3SUK A;  3SUJ A;  2G5D A;  4JS7 A;  5GM9 A;  1WC2 A;  3X2H A;  3X2O A;  3ENG A;  4JCW A;  2HCZ X;  3X2I A;  4FFT A;  3X2J A;  4FER A;  4ENG A;  3X2K A;  3SUL A;  2BH0 A;  2ENG A;  4FG2 A;  1OA9 A;  3X2N A;  4JJO A;  3X2L A;  2G6G A;  4L48 A;  3X2G A;  4JP7 A;  1BW3 A;  1L8F A;  1OA7 A;  3M3G A;  2GAE A;  2PIC A;  1BW4 A;  5H4U A;  4AVR A;  2PNW A;  2PJJ A;  2AE0 X;  3X2M A;  4FG4 A;  4ZM7 A;  4JP6 A; 
#chains in the Genus database with same CATH topology
 5DYG A;  3SUM A;  4UY8 8;  1EUY A;  4V19 4;  2NAP A;  1QRS A;  5DM7 S;  2JIM A;  1GTR A;  4DMR A;  2JA6 A;  3HU3 A;  4KDL A;  1VC3 B;  5FTN A;  1QTQ A;  5FTJ A;  3TM7 B;  3DLL S;  2A68 D;  4IOC S;  1YLE A;  2HCZ X;  1S3S A;  5JVH S;  3GTK A;  1E61 A;  1FDO A;  1CZ4 A;  1E32 A;  3X2K A;  5FTK A;  5EPP A;  5GAE W;  1KQG A;  1DMS A;  3GTL A;  4L69 A;  1OA9 A;  3TIW A;  4AOK B;  2PMZ A;  3GTP A;  1Z85 A;  1QCS A;  3IR5 A;  4J3C A;  2O5J D;  4CRY G;  1OA7 A;  3H0G A;  3W2W B;  2PIC A;  2WB1 A;  1DMR A;  1PQE A;  1UHD A;  4AVR A;  1Y4Z A;  1QRU A;  4QIW A;  1ZC1 A;  5B6C A;  4P2B A;  1PQF A;  2VPY A;  3QWZ A;  5GAH W;  4U67 S;  1I50 A;  2PI8 A;  3CZB A;  1YNN D;  2KQA A;  5GAD W;  3FKI A;  1EU1 A;  5GLY A;  3D30 A;  2E2H A;  1O0C A;  3IR7 A;  3SUJ A;  1NYL A;  2ZJR S;  5T5M D;  4C2M A;  2VPZ A;  1PT1 A;  1Q16 A;  2E7Z A;  3HU2 A;  4AON B;  4IOA S;  3X2O A;  1PT0 A;  4JCW A;  1R7R A;  5C18 A;  2JA5 A;  3W2V B;  3X2I A;  4WFB S;  4WCE S;  3X2J A;  3O5A A;  4AZD A;  4AAY A;  1EUQ A;  2C45 A;  2YU9 A;  1DFU P;  3HU1 A;  2VPW A;  5HL7 S;  2RE8 A;  2EGW A;  2ENG A;  3GTQ A;  2Y0S A;  1ZYR D;  5DM6 S;  2RD2 A;  4JP7 A;  1BW3 A;  1PQH A;  1FDI A;  2B63 A;  1VHY A;  2HZ7 A;  1CZ5 A;  1OGY A;  1G8K A;  1EXD A;  4H3S A;  1Y5I A;  3DMR A;  4GA5 A;  1AA6 A;  1ZJW A;  1PYQ A;  2JA7 A;  2KI8 A;  2NVY A;  1WLF A;  5H4U A;  1SFO A;  5GLF A;  4JXZ A;  4ZM7 A;  2A69 D;  4JP6 A;  3KW2 A;  1QRT A;  2R92 A;  2YUJ A;  3CF2 A;  3GTO A;  4JXX A;  4KO8 A;  1N10 A;  2JIR A;  4RV0 A;  1GTS A;  3X1L B;  4KDI A;  2IV2 X;  2E2I A;  3QQ8 A;  1KQF A;  2NWA A;  4JS7 A;  5GM9 A;  1WC2 A;  1O0B A;  4FFT A;  1SMY D;  1AW8 B;  1UHE A;  2A6E D;  4FER A;  1UDX A;  4WFN S;  3IR6 A;  1PPY A;  4AYB A;  1CR5 A;  4NOH A;  2BH0 A;  3HKZ A;  2Z0Y A;  3X2N A;  4JJO A;  3X2L A;  5FTM A;  5C1B A;  2VUM A;  2G6G A;  4L48 A;  3OUG A;  3X2G A;  4H4K A;  5IZN A;  1L8F A;  3GTG A;  1Y1W A;  4CS0 A;  3M3G A;  1D6K A;  1TWA A;  1H0H A;  4D7Z B;  3AII A;  3ML1 A;  2NYA A;  2ZJQ S;  1BW4 A;  1R9T A;  2WAQ A;  2PJJ A;  2AE0 X;  1Y1V A;  4JYZ A;  1PYU B;  2JIO A;  3CQZ A;  4FG4 A;  3X2M A;  4E8B A;  1H5N A;  5T5I D;  5GLX A;  1TWC A;  1HD5 A;  1FEU A;  2JIP A;  3GTJ A;  3X2P A;  4CRZ A;  3SUK A;  4IO9 S;  2G5D A;  1QDN A;  1IW7 D;  2JIQ A;  1K83 A;  2PJH B;  2V3V A;  3X2H A;  2CX8 A;  3QC8 A;  1TWG A;  3ENG A;  4WFA S;  5BNZ A;  2NVX A;  1G8J A;  2R7Z A;  3J7Z V;  4GA6 A;  1E18 A;  1TWF A;  2V45 A;  4ENG A;  1TMO A;  3SUL A;  3PIO S;  1YNJ D;  4FG2 A;  5FTL A;  1WCM A;  2A6H D;  2DMR A;  2R93 A;  4KOD A;  1V6Z A;  1E60 A;  5JVG S;  5DYI A;  1SIW A;  2CW0 D;  3CF5 S;  1TWH A;  2BE5 D;  2GAE A;  4KLN A;  1B75 A;  1I3Q A;  3PLX B;  3PIP S;  2ZJP S;  2EEO B;  2PNW A;  3GTM A;  1E5V A;  2EGV A;  5GAG W;  4WF9 S;  1NXZ A;  1R27 A;  3QQ7 A;  2VPX A;  1VHK A; 
#chains in the Genus database with same CATH homology
 5DYG A;  3SUM A;  2NAP A;  2JIM A;  4DMR A;  2JA6 A;  3HU3 A;  4KDL A;  1VC3 B;  5FTN A;  5FTJ A;  3TM7 B;  2A68 D;  1YLE A;  2HCZ X;  1S3S A;  3GTK A;  1E61 A;  1CZ4 A;  1FDO A;  1E32 A;  3X2K A;  5FTK A;  5EPP A;  1KQG A;  1DMS A;  3GTL A;  1OA9 A;  3TIW A;  4AOK B;  2PMZ A;  3GTP A;  1QCS A;  3IR5 A;  2O5J D;  4CRY G;  1OA7 A;  3H0G A;  2PIC A;  2WB1 A;  1DMR A;  1PQE A;  1UHD A;  4AVR A;  1Y4Z A;  4QIW A;  1ZC1 A;  5B6C A;  1PQF A;  2VPY A;  3QWZ A;  1I50 A;  2PI8 A;  3CZB A;  1YNN D;  2KQA A;  3FKI A;  1EU1 A;  5GLY A;  3D30 A;  2E2H A;  3SUJ A;  3IR7 A;  5T5M D;  4C2M A;  2VPZ A;  1PT1 A;  1Q16 A;  2E7Z A;  3HU2 A;  4AON B;  3X2O A;  4JCW A;  1PT0 A;  1R7R A;  5C18 A;  2JA5 A;  3X2I A;  3X2J A;  3O5A A;  4AZD A;  4AAY A;  2C45 A;  2YU9 A;  3HU1 A;  2VPW A;  2ENG A;  3GTQ A;  2Y0S A;  1ZYR D;  4JP7 A;  1BW3 A;  1PQH A;  1FDI A;  2B63 A;  1CZ5 A;  1OGY A;  1G8K A;  1Y5I A;  3DMR A;  4GA5 A;  1AA6 A;  1PYQ A;  2JA7 A;  2KI8 A;  2NVY A;  5H4U A;  1WLF A;  1SFO A;  5GLF A;  4ZM7 A;  2A69 D;  4JP6 A;  2R92 A;  2YUJ A;  3CF2 A;  3GTO A;  4KO8 A;  1N10 A;  2JIR A;  4RV0 A;  4KDI A;  2IV2 X;  2E2I A;  3QQ8 A;  1KQF A;  4JS7 A;  5GM9 A;  1WC2 A;  4FFT A;  1SMY D;  1AW8 B;  1UHE A;  4FER A;  2A6E D;  3IR6 A;  1PPY A;  4AYB A;  1CR5 A;  4NOH A;  2BH0 A;  3HKZ A;  3X2N A;  4JJO A;  3X2L A;  5FTM A;  5C1B A;  2VUM A;  2G6G A;  4L48 A;  3X2G A;  3OUG A;  1L8F A;  3GTG A;  1Y1W A;  4CS0 A;  3M3G A;  1TWA A;  1H0H A;  4D7Z B;  3ML1 A;  2NYA A;  1BW4 A;  1R9T A;  2WAQ A;  2PJJ A;  2AE0 X;  1Y1V A;  1PYU B;  3X2M A;  4FG4 A;  2JIO A;  3CQZ A;  1H5N A;  5T5I D;  5GLX A;  1TWC A;  1HD5 A;  2JIP A;  3GTJ A;  3X2P A;  4CRZ A;  3SUK A;  2G5D A;  1QDN A;  1IW7 D;  2JIQ A;  1K83 A;  2PJH B;  2V3V A;  3X2H A;  3QC8 A;  3ENG A;  1TWG A;  2NVX A;  1G8J A;  2R7Z A;  4GA6 A;  1E18 A;  4ENG A;  1TWF A;  2V45 A;  1TMO A;  3SUL A;  1YNJ D;  4FG2 A;  5FTL A;  1WCM A;  2A6H D;  2DMR A;  2R93 A;  4KOD A;  1E60 A;  5DYI A;  1SIW A;  2CW0 D;  1TWH A;  2BE5 D;  2GAE A;  4KLN A;  1I3Q A;  3PLX B;  2EEO B;  2PNW A;  3GTM A;  1E5V A;  1R27 A;  3QQ7 A;  2VPX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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