2PNWA

Crystal structure of membrane-bound lytic murein transglycosylase from agrobacterium tumefaciens
Total Genus 101
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
101
sequence length
365
structure length
354
Chain Sequence
FSIDEVSFRDLPGWGQDDPRKLFPAMATILSHLRNAKPYRTGALGITAAELVSLLELAERGQVNSPEQARQFFETNSVPFRISPSGFVTAFYEPELEVSATPDDVWRYPIYRRPPELVDIDNDNRPDGFDPSYAFGKADEEGISYFPDRRAIDEGCLRGRGLEIAWARSKVDLFFVHVQGAARLVFPDGAIKRITYAAKAGHVFSPIGRLLLDRGELDPKTISMQTIRQWLADHPDEVDGVLWHNRSYIFFREAGPIAAAKVPLVAGRALAVDRLIHTFGLPFFIHAPTLTHLDDGKPFARLMLALDTGSAIVGPARGDIFTGSGFEAGELAGTVRNEADFYILLPRIAAERYR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of membrane-bound lytic murein transglycosylase from Agrobacterium tumefaciens.
rcsb
source organism Agrobacterium tumefaciens str.
molecule tags Hydrolase
molecule keywords Membrane-bound lytic murein transglycosylase
total genus 101
structure length 354
sequence length 365
ec nomenclature
pdb deposition date 2007-04-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03562 MltA MltA specific insert domain
A PF06725 3D 3D domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.40.10 Mainly Beta Beta Barrel Barwin-like endoglucanases RlpA-like domain 2pnwA01
2.40.240.50 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Barwin-like endoglucanases 2pnwA02
3CZBA 2HCZX 3SUMA 4JS7A 5GM9A 1L8FA 3X2GA 2AE0X 3SUJA 4ZM7A 3ENGA 2G6GA 3X2IA 3X2JA 5H4UA 3X2KA 3D30A 5GLYA 3SUKA 3X2OA 4ENGA 5GLXA 2ENGA 4JJOA 4AVRA 2PI8A 3SULA 1HD5A 3X2LA 4FG2A 4FERA 1WC2A 4L48A 2PNWA 4FFTA 2GAEA 3X2HA 1BW3A 1OA9A 4JP7A 2BH0A 2PJJA 3X2PA 3X2NA 1BW4A 4FG4A 2KQAA 1N10A 2PICA 3M3GA 3X2MA 2G5DA 4JP6A 1OA7A 4JCWA
chains in the Genus database with same CATH superfamily
2RE8A 2VPWA 4L69A 1PQHA 1EUYA 1SFOA 2VUMA 1Y1VA 3TM7B 1GTRA 5GADW 2JIOA 4D7ZB 5GAGW 4ZM7A 3OUGA 1ZC1A 4IOCS 2G6GA 3IR5A 4CS0A 5IZNA 3D30A 3TIWA 1O0BA 3CQZA 3X2OA 3GTPA 3HU2A 4AVRA 4AZDA 5EPPA 1K83A 3GTOA 4E8BA 1FDOA 2BE5D 3W2WB 4FFTA 2GAEA 2EGVA 2Y0SA 4AOKB 1OA9A 2EEOB 3GTQA 4GA6A 3PLXB 4NOHA 2BH0A 5FTKA 3PIPS 2IV2X 1IW7D 1BW4A 4FG4A 1Z85A 2RD2A 2HZ7A 2G5DA 2B63A 4CRZA 1AW8B 4AAYA 5T5ID 2Z0YA 1Y1WA 5GAHW 1FDIA 3CZBA 2VPYA 1UDXA 3X1LB 5JVGS 4H3SA 3SUMA 1PQEA 3GTKA 1H0HA 3X2GA 2JIQA 2JIMA 2AE0X 2E7ZA 1R9TA 3FKIA 4C2MA 1D6KA 4KODA 1YLEA 2R92A 1QRUA 3X2KA 3SUKA 4J3CA 3J7ZV 1SMYD 2ENGA 2JA5A 4RV0A 2WB1A 4FG2A 4FERA 4L48A 5GAEW 5DYIA 1I50A 3CF5S 1ZJWA 1G8JA 1QDNA 2C45A 3IR7A 2CX8A 2PJHB 1PQFA 3W2VB 1EUQA 1B75A 2A6ED 1SIWA 4JP7A 3PIOS 2E2HA 5FTNA 2YU9A 2PJJA 5GLFA 3IR6A 3X2NA 3KW2A 1E32A 2PICA 1UHDA 3DMRA 1YNJD 1I3QA 5FTLA 1OA7A 3ML1A 4WFAS 2ZJPS 4CRYG 1R7RA 4P2BA 4U67S 1CR5A 2NAPA 3AIIA 5JVHS 1E18A 1L8FA 5GM9A 1OGYA 1PYUB 3SUJA 1PPYA 4WF9S 1DFUP 3X2JA 1QTQA 5H4UA 1VHYA 5GLYA 2KI8A 4GA5A 3GTGA 3GTMA 4ENGA 4WFNS 5T5MD 1E60A 2A69D 4JJOA 2R7ZA 4JYZA 1O0CA 3SULA 1HD5A 1NYLA 3CF2A 4UY88 5HL7S 1WLFA 4WCES 2PNWA 4QIWA 4IO9S 1PYQA 2V45A 3QC8A 4H4KA 1GTSA 1CZ4A 2NVXA 2E2IA 1EXDA 5C18A 1TMOA 5FTMA 1TWCA 3QQ8A 4KO8A 2KQAA 1N10A 4DMRA 1E5VA 3GTLA 2VPZA 2EGWA 5BNZA 4IOAS 1Y5IA 4JXXA 1Q16A 1VC3B 1H5NA 2WAQA 4V194 2VPXA 1VHKA 5C1BA 1G8KA 1Y4ZA 2HCZX 4JS7A 3HU1A 3GTJA 1PT0A 3HU3A 1UHEA 3DLLS 2V3VA 1R27A 1V6ZA 3ENGA 1TWGA 2JIPA 4AYBA 1PT1A 3X2IA 2JA7A 3QWZA 2YUJA 1TWHA 4KDIA 2CW0D 5GLXA 2R93A 1EU1A 2A68D 2PI8A 2NVYA 3HKZA 3X2LA 1E61A 1CZ5A 5DM7S 1WC2A 1DMRA 5B6CA 4KLNA 3X2HA 1BW3A 4KDLA 1AA6A 4WFBS 1DMSA 1QCSA 1YNND 5FTJA 2ZJQS 5DYGA 2JA6A 2ZJRS 2A6HD 1TWFA 1FEUA 2NYAA 3O5AA 1WCMA 2O5JD 3H0GA 2NWAA 1NXZA 5DM6S 3X2PA 2DMRA 2JIRA 1S3SA 3M3GA 1ZYRD 3QQ7A 3X2MA 4AONB 1QRSA 1KQGA 2PMZA 1QRTA 4JXZA 4JP6A 1KQFA 4JCWA 1TWAA
chains in the Genus database with same CATH topology
2VPWA 1PQHA 1SFOA 2VUMA 1Y1VA 3TM7B 2JIOA 4D7ZB 4ZM7A 3OUGA 1ZC1A 2G6GA 3IR5A 4CS0A 3D30A 3TIWA 3X2OA 3CQZA 3GTPA 4AVRA 3HU2A 4AZDA 5EPPA 1K83A 3GTOA 1FDOA 2BE5D 4FFTA 2GAEA 2Y0SA 4AOKB 1OA9A 2EEOB 3GTQA 4GA6A 3PLXB 4NOHA 2BH0A 5FTKA 2IV2X 1BW4A 1IW7D 4FG4A 2G5DA 2B63A 4CRZA 1AW8B 4AAYA 5T5ID 1Y1WA 3CZBA 1FDIA 2VPYA 3SUMA 1PQEA 3GTKA 1H0HA 3X2GA 2JIQA 2JIMA 2AE0X 2E7ZA 1R9TA 3FKIA 4C2MA 4KODA 1YLEA 2R92A 3X2KA 3SUKA 2ENGA 1SMYD 2JA5A 4RV0A 2WB1A 4FG2A 4FERA 4L48A 5DYIA 1I50A 1G8JA 1QDNA 2C45A 3IR7A 2PJHB 1PQFA 2A6ED 1SIWA 4JP7A 2E2HA 5FTNA 2YU9A 2PJJA 5GLFA 3IR6A 3X2NA 1E32A 2PICA 1UHDA 3DMRA 1YNJD 1I3QA 5FTLA 1OA7A 3ML1A 4CRYG 1R7RA 1CR5A 2NAPA 5GM9A 1L8FA 1E18A 1OGYA 3SUJA 1PYUB 1PPYA 3X2JA 5H4UA 5GLYA 2KI8A 4GA5A 3GTGA 3GTMA 4ENGA 5T5MD 4JJOA 1E60A 2A69D 2R7ZA 3SULA 1HD5A 3CF2A 1WLFA 2PNWA 4QIWA 1PYQA 2V45A 3QC8A 1CZ4A 2NVXA 2E2IA 5C18A 1TMOA 5FTMA 1TWCA 3QQ8A 4KO8A 2KQAA 1N10A 4DMRA 1E5VA 3GTLA 2VPZA 1Y5IA 1Q16A 1H5NA 1VC3B 2WAQA 2VPXA 5C1BA 2HCZX 1G8KA 1Y4ZA 4JS7A 3HU1A 3GTJA 1PT0A 3HU3A 1UHEA 2V3VA 1R27A 3ENGA 1TWGA 2JIPA 4AYBA 1PT1A 3X2IA 2JA7A 3QWZA 2YUJA 1TWHA 5GLXA 2CW0D 4KDIA 2R93A 1EU1A 2A68D 2PI8A 2NVYA 3HKZA 3X2LA 1E61A 1CZ5A 1WC2A 1DMRA 5B6CA 4KLNA 3X2HA 1BW3A 4KDLA 1AA6A 1DMSA 1QCSA 1YNND 5FTJA 5DYGA 2JA6A 2A6HD 1TWFA 2NYAA 3O5AA 1WCMA 2O5JD 3H0GA 3X2PA 2DMRA 2JIRA 3M3GA 3X2MA 1S3SA 1ZYRD 3QQ7A 4AONB 1KQGA 2PMZA 4JP6A 1KQFA 4JCWA 1TWAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CZB A;  2HCZ X;  3SUM A;  4JS7 A;  5GM9 A;  1L8F A;  3X2G A;  2AE0 X;  3SUJ A;  4ZM7 A;  3ENG A;  2G6G A;  3X2I A;  3X2J A;  5H4U A;  3X2K A;  3D30 A;  5GLY A;  3SUK A;  3X2O A;  4ENG A;  5GLX A;  2ENG A;  4JJO A;  4AVR A;  2PI8 A;  3SUL A;  1HD5 A;  3X2L A;  4FG2 A;  4FER A;  1WC2 A;  4L48 A;  2PNW A;  4FFT A;  2GAE A;  3X2H A;  1BW3 A;  1OA9 A;  4JP7 A;  2BH0 A;  2PJJ A;  3X2P A;  3X2N A;  1BW4 A;  4FG4 A;  2KQA A;  1N10 A;  2PIC A;  3M3G A;  3X2M A;  2G5D A;  4JP6 A;  1OA7 A;  4JCW A; 
#chains in the Genus database with same CATH topology
 2RE8 A;  2VPW A;  4L69 A;  1PQH A;  1EUY A;  1SFO A;  2VUM A;  1Y1V A;  3TM7 B;  1GTR A;  5GAD W;  2JIO A;  4D7Z B;  5GAG W;  4ZM7 A;  3OUG A;  1ZC1 A;  4IOC S;  2G6G A;  3IR5 A;  4CS0 A;  5IZN A;  3D30 A;  3TIW A;  1O0B A;  3CQZ A;  3X2O A;  3GTP A;  3HU2 A;  4AVR A;  4AZD A;  5EPP A;  1K83 A;  3GTO A;  4E8B A;  1FDO A;  2BE5 D;  3W2W B;  4FFT A;  2GAE A;  2EGV A;  2Y0S A;  4AOK B;  1OA9 A;  2EEO B;  3GTQ A;  4GA6 A;  3PLX B;  4NOH A;  2BH0 A;  5FTK A;  3PIP S;  2IV2 X;  1IW7 D;  1BW4 A;  4FG4 A;  1Z85 A;  2RD2 A;  2HZ7 A;  2G5D A;  2B63 A;  4CRZ A;  1AW8 B;  4AAY A;  5T5I D;  2Z0Y A;  1Y1W A;  5GAH W;  1FDI A;  3CZB A;  2VPY A;  1UDX A;  3X1L B;  5JVG S;  4H3S A;  3SUM A;  1PQE A;  3GTK A;  1H0H A;  3X2G A;  2JIQ A;  2JIM A;  2AE0 X;  2E7Z A;  1R9T A;  3FKI A;  4C2M A;  1D6K A;  4KOD A;  1YLE A;  2R92 A;  1QRU A;  3X2K A;  3SUK A;  4J3C A;  3J7Z V;  1SMY D;  2ENG A;  2JA5 A;  4RV0 A;  2WB1 A;  4FG2 A;  4FER A;  4L48 A;  5GAE W;  5DYI A;  1I50 A;  3CF5 S;  1ZJW A;  1G8J A;  1QDN A;  2C45 A;  3IR7 A;  2CX8 A;  2PJH B;  1PQF A;  3W2V B;  1EUQ A;  1B75 A;  2A6E D;  1SIW A;  4JP7 A;  3PIO S;  2E2H A;  5FTN A;  2YU9 A;  2PJJ A;  5GLF A;  3IR6 A;  3X2N A;  3KW2 A;  1E32 A;  2PIC A;  1UHD A;  3DMR A;  1YNJ D;  1I3Q A;  5FTL A;  1OA7 A;  3ML1 A;  4WFA S;  2ZJP S;  4CRY G;  1R7R A;  4P2B A;  4U67 S;  1CR5 A;  2NAP A;  3AII A;  5JVH S;  1E18 A;  1L8F A;  5GM9 A;  1OGY A;  1PYU B;  3SUJ A;  1PPY A;  4WF9 S;  1DFU P;  3X2J A;  1QTQ A;  5H4U A;  1VHY A;  5GLY A;  2KI8 A;  4GA5 A;  3GTG A;  3GTM A;  4ENG A;  4WFN S;  5T5M D;  1E60 A;  2A69 D;  4JJO A;  2R7Z A;  4JYZ A;  1O0C A;  3SUL A;  1HD5 A;  1NYL A;  3CF2 A;  4UY8 8;  5HL7 S;  1WLF A;  4WCE S;  2PNW A;  4QIW A;  4IO9 S;  1PYQ A;  2V45 A;  3QC8 A;  4H4K A;  1GTS A;  1CZ4 A;  2NVX A;  2E2I A;  1EXD A;  5C18 A;  1TMO A;  5FTM A;  1TWC A;  3QQ8 A;  4KO8 A;  2KQA A;  1N10 A;  4DMR A;  1E5V A;  3GTL A;  2VPZ A;  2EGW A;  5BNZ A;  4IOA S;  1Y5I A;  4JXX A;  1Q16 A;  1VC3 B;  1H5N A;  2WAQ A;  4V19 4;  2VPX A;  1VHK A;  5C1B A;  1G8K A;  1Y4Z A;  2HCZ X;  4JS7 A;  3HU1 A;  3GTJ A;  1PT0 A;  3HU3 A;  1UHE A;  3DLL S;  2V3V A;  1R27 A;  1V6Z A;  3ENG A;  1TWG A;  2JIP A;  4AYB A;  1PT1 A;  3X2I A;  2JA7 A;  3QWZ A;  2YUJ A;  1TWH A;  4KDI A;  2CW0 D;  5GLX A;  2R93 A;  1EU1 A;  2A68 D;  2PI8 A;  2NVY A;  3HKZ A;  3X2L A;  1E61 A;  1CZ5 A;  5DM7 S;  1WC2 A;  1DMR A;  5B6C A;  4KLN A;  3X2H A;  1BW3 A;  4KDL A;  1AA6 A;  4WFB S;  1DMS A;  1QCS A;  1YNN D;  5FTJ A;  2ZJQ S;  5DYG A;  2JA6 A;  2ZJR S;  2A6H D;  1TWF A;  1FEU A;  2NYA A;  3O5A A;  1WCM A;  2O5J D;  3H0G A;  2NWA A;  1NXZ A;  5DM6 S;  3X2P A;  2DMR A;  2JIR A;  1S3S A;  3M3G A;  1ZYR D;  3QQ7 A;  3X2M A;  4AON B;  1QRS A;  1KQG A;  2PMZ A;  1QRT A;  4JXZ A;  4JP6 A;  1KQF A;  4JCW A;  1TWA A; 
#chains in the Genus database with same CATH homology
 2VPW A;  1PQH A;  1SFO A;  2VUM A;  1Y1V A;  3TM7 B;  2JIO A;  4D7Z B;  4ZM7 A;  3OUG A;  1ZC1 A;  2G6G A;  3IR5 A;  4CS0 A;  3D30 A;  3TIW A;  3X2O A;  3CQZ A;  3GTP A;  4AVR A;  3HU2 A;  4AZD A;  5EPP A;  1K83 A;  3GTO A;  1FDO A;  2BE5 D;  4FFT A;  2GAE A;  2Y0S A;  4AOK B;  1OA9 A;  2EEO B;  3GTQ A;  4GA6 A;  3PLX B;  4NOH A;  2BH0 A;  5FTK A;  2IV2 X;  1BW4 A;  1IW7 D;  4FG4 A;  2G5D A;  2B63 A;  4CRZ A;  1AW8 B;  4AAY A;  5T5I D;  1Y1W A;  3CZB A;  1FDI A;  2VPY A;  3SUM A;  1PQE A;  3GTK A;  1H0H A;  3X2G A;  2JIQ A;  2JIM A;  2AE0 X;  2E7Z A;  1R9T A;  3FKI A;  4C2M A;  4KOD A;  1YLE A;  2R92 A;  3X2K A;  3SUK A;  2ENG A;  1SMY D;  2JA5 A;  4RV0 A;  2WB1 A;  4FG2 A;  4FER A;  4L48 A;  5DYI A;  1I50 A;  1G8J A;  1QDN A;  2C45 A;  3IR7 A;  2PJH B;  1PQF A;  2A6E D;  1SIW A;  4JP7 A;  2E2H A;  5FTN A;  2YU9 A;  2PJJ A;  5GLF A;  3IR6 A;  3X2N A;  1E32 A;  2PIC A;  1UHD A;  3DMR A;  1YNJ D;  1I3Q A;  5FTL A;  1OA7 A;  3ML1 A;  4CRY G;  1R7R A;  1CR5 A;  2NAP A;  5GM9 A;  1L8F A;  1E18 A;  1OGY A;  3SUJ A;  1PYU B;  1PPY A;  3X2J A;  5H4U A;  5GLY A;  2KI8 A;  4GA5 A;  3GTG A;  3GTM A;  4ENG A;  5T5M D;  4JJO A;  1E60 A;  2A69 D;  2R7Z A;  3SUL A;  1HD5 A;  3CF2 A;  1WLF A;  2PNW A;  4QIW A;  1PYQ A;  2V45 A;  3QC8 A;  1CZ4 A;  2NVX A;  2E2I A;  5C18 A;  1TMO A;  5FTM A;  1TWC A;  3QQ8 A;  4KO8 A;  2KQA A;  1N10 A;  4DMR A;  1E5V A;  3GTL A;  2VPZ A;  1Y5I A;  1Q16 A;  1H5N A;  1VC3 B;  2WAQ A;  2VPX A;  5C1B A;  2HCZ X;  1G8K A;  1Y4Z A;  4JS7 A;  3HU1 A;  3GTJ A;  1PT0 A;  3HU3 A;  1UHE A;  2V3V A;  1R27 A;  3ENG A;  1TWG A;  2JIP A;  4AYB A;  1PT1 A;  3X2I A;  2JA7 A;  3QWZ A;  2YUJ A;  1TWH A;  5GLX A;  2CW0 D;  4KDI A;  2R93 A;  1EU1 A;  2A68 D;  2PI8 A;  2NVY A;  3HKZ A;  3X2L A;  1E61 A;  1CZ5 A;  1WC2 A;  1DMR A;  5B6C A;  4KLN A;  3X2H A;  1BW3 A;  4KDL A;  1AA6 A;  1DMS A;  1QCS A;  1YNN D;  5FTJ A;  5DYG A;  2JA6 A;  2A6H D;  1TWF A;  2NYA A;  3O5A A;  1WCM A;  2O5J D;  3H0G A;  3X2P A;  2DMR A;  2JIR A;  3M3G A;  3X2M A;  1S3S A;  1ZYR D;  3QQ7 A;  4AON B;  1KQG A;  2PMZ A;  4JP6 A;  1KQF A;  4JCW A;  1TWA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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