3J7ZV

Structure of the e. coli 50s subunit with ermcl nascent chain
Total Genus 22
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
94
structure length
94
Chain Sequence
b'MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords 50S ribosomal protein L32
publication title Drug Sensing by the Ribosome Induces Translational Arrest via Active Site Perturbation.
pubmed doi rcsb
molecule tags Ribosome/antibiotic
total genus 22
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2014-08-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
V PF01386 Ribosomal_L25p Ribosomal L25p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 3j7zV00
1EUYA 4JXXA 5DM6S 1DFUP 4P2BA 1ZJWA 2ZJPS 4IOAS 2ZJRS 4WCES 4WF9S 3J7ZV 4IO9S 5GAGW 4IOCS 5IZNA 3PIOS 5JVHS 4H3SA 5HL7S 2HZ7A 5BNZA 2RD2A 4JYZA 1QRSA 4U67S 1QTQA 1NYLA 5DM7S 4WFAS 4WFNS 5GADW 1GTSA 5GAHW 1EXDA 4JXZA 5JVGS 1O0BA 1D6KA 1FEUA 2RE8A 3PIPS 5GAEW 1O0CA 1EUQA 1GTRA 1QRUA 4WFBS 3DLLS 4UY88 1B75A 1QRTA 2ZJQS 3AIIA 3CF5S
chains in the Genus database with same CATH superfamily
4L69A 4JXXA 5DM6S 1DFUP 3PIOS 2HZ7A 2NWAA 1QTQA 4WFNS 5GADW 1NXZA 2EGWA 1O0BA 5GAEW 4E8BA 1V6ZA 3DLLS 1VHYA 3CF5S 4JXZA 2EGVA 3CZBA 4P2BA 4IOAS 2ZJRS 4WCES 1UDXA 3J7ZV 4IO9S 5JVHS 4V194 5HL7S 3KW2A 2GAEA 1NYLA 1EXDA 5JVGS 1O0CA 2PI8A 1Z85A 1QRTA 3AIIA 4JYZA 1EUYA 2G5DA 5GAGW 5BNZA 1QRSA 4U67S 4H4KA 5DM7S 4WFAS 1GTSA 3W2WB 2RE8A 1EUQA 1GTRA 1VHKA 4WFBS 4UY88 1B75A 2PJJA 2PNWA 2Z0YA 1ZJWA 2ZJPS 4WF9S 4IOCS 5IZNA 4H3SA 3W2VB 2RD2A 2PICA 4J3CA 2AE0X 2CX8A 5GAHW 1D6KA 1FEUA 3PIPS 2G6GA 1QRUA 3X1LB 2ZJQS
chains in the Genus database with same CATH topology
1EUYA 4JXXA 5DM6S 1DFUP 4P2BA 1ZJWA 2ZJPS 4IOAS 2ZJRS 4WCES 4WF9S 1UDXA 3J7ZV 4IO9S 5GAGW 4IOCS 5IZNA 3PIOS 5JVHS 4H3SA 4V194 5HL7S 3W2VB 2HZ7A 5BNZA 2RD2A 4JYZA 1QRSA 4U67S 1QTQA 4H4KA 1NYLA 5DM7S 4WFAS 4WFNS 5GADW 1GTSA 5GAHW 1EXDA 3W2WB 4JXZA 5JVGS 1O0BA 1D6KA 1FEUA 2RE8A 3PIPS 5GAEW 1O0CA 1EUQA 1GTRA 1QRUA 4WFBS 3DLLS 4UY88 3X1LB 1QRTA 2ZJQS 1B75A 3AIIA 3CF5S
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EUY A;  4JXX A;  5DM6 S;  1DFU P;  4P2B A;  1ZJW A;  2ZJP S;  4IOA S;  2ZJR S;  4WCE S;  4WF9 S;  3J7Z V;  4IO9 S;  5GAG W;  4IOC S;  5IZN A;  3PIO S;  5JVH S;  4H3S A;  5HL7 S;  2HZ7 A;  5BNZ A;  2RD2 A;  4JYZ A;  1QRS A;  4U67 S;  1QTQ A;  1NYL A;  5DM7 S;  4WFA S;  4WFN S;  5GAD W;  1GTS A;  5GAH W;  1EXD A;  4JXZ A;  5JVG S;  1O0B A;  1D6K A;  1FEU A;  2RE8 A;  3PIP S;  5GAE W;  1O0C A;  1EUQ A;  1GTR A;  1QRU A;  4WFB S;  3DLL S;  4UY8 8;  1B75 A;  1QRT A;  2ZJQ S;  3AII A;  3CF5 S; 
#chains in the Genus database with same CATH topology
 4L69 A;  4JXX A;  5DM6 S;  1DFU P;  3PIO S;  2HZ7 A;  2NWA A;  1QTQ A;  4WFN S;  5GAD W;  1NXZ A;  2EGW A;  1O0B A;  5GAE W;  4E8B A;  1V6Z A;  3DLL S;  1VHY A;  3CF5 S;  4JXZ A;  2EGV A;  3CZB A;  4P2B A;  4IOA S;  2ZJR S;  4WCE S;  1UDX A;  3J7Z V;  4IO9 S;  5JVH S;  4V19 4;  5HL7 S;  3KW2 A;  2GAE A;  1NYL A;  1EXD A;  5JVG S;  1O0C A;  2PI8 A;  1Z85 A;  1QRT A;  3AII A;  4JYZ A;  1EUY A;  2G5D A;  5GAG W;  5BNZ A;  1QRS A;  4U67 S;  4H4K A;  5DM7 S;  4WFA S;  1GTS A;  3W2W B;  2RE8 A;  1EUQ A;  1GTR A;  1VHK A;  4WFB S;  4UY8 8;  1B75 A;  2PJJ A;  2PNW A;  2Z0Y A;  1ZJW A;  2ZJP S;  4WF9 S;  4IOC S;  5IZN A;  4H3S A;  3W2V B;  2RD2 A;  2PIC A;  4J3C A;  2AE0 X;  2CX8 A;  5GAH W;  1D6K A;  1FEU A;  3PIP S;  2G6G A;  1QRU A;  3X1L B;  2ZJQ S; 
#chains in the Genus database with same CATH homology
 1EUY A;  4JXX A;  5DM6 S;  1DFU P;  4P2B A;  1ZJW A;  2ZJP S;  4IOA S;  2ZJR S;  4WCE S;  4WF9 S;  1UDX A;  3J7Z V;  4IO9 S;  5GAG W;  4IOC S;  5IZN A;  3PIO S;  5JVH S;  4H3S A;  4V19 4;  5HL7 S;  3W2V B;  2HZ7 A;  5BNZ A;  2RD2 A;  4JYZ A;  1QRS A;  4U67 S;  1QTQ A;  4H4K A;  1NYL A;  5DM7 S;  4WFA S;  4WFN S;  5GAD W;  1GTS A;  5GAH W;  1EXD A;  3W2W B;  4JXZ A;  5JVG S;  1O0B A;  1D6K A;  1FEU A;  2RE8 A;  3PIP S;  5GAE W;  1O0C A;  1EUQ A;  1GTR A;  1QRU A;  4WFB S;  3DLL S;  4UY8 8;  3X1L B;  1QRT A;  2ZJQ S;  1B75 A;  3AII A;  3CF5 S; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...