3J7ZV

Structure of the e. coli 50s subunit with ermcl nascent chain
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
94
structure length
94
Chain Sequence
MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 50S ribosomal protein L32
publication title Drug Sensing by the Ribosome Induces Translational Arrest via Active Site Perturbation.
pubmed doi rcsb
molecule tags Ribosome/antibiotic
total genus 22
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2014-08-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
V PF01386 Ribosomal_L25p Ribosomal L25p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 3j7zV00
4JXXA 2HZ7A 5HL7S 2ZJPS 1EUYA 1GTRA 1QRUA 3AIIA 1EXDA 5GAHW 1GTSA 1QRTA 3PIOS 4WCES 4WFAS 4UY88 4U67S 4WF9S 1FEUA 4WFNS 3J7ZV 2ZJQS 5JVHS 4IOCS 3DLLS 5BNZA 4IO9S 2RE8A 5DM6S 5GADW 3PIPS 4P2BA 2ZJRS 5JVGS 1DFUP 2RD2A 1O0CA 4IOAS 5GAGW 1QRSA 1O0BA 4JXZA 5DM7S 1EUQA 1B75A 1NYLA 1ZJWA 1QTQA 4JYZA 5GAEW 5IZNA 3CF5S 1D6KA 4H3SA 4WFBS
chains in the Genus database with same CATH superfamily
3X1LB 2Z0YA 1EXDA 1GTSA 4WCES 4U67S 1FEUA 4IO9S 3PIPS 5GADW 2ZJRS 5JVGS 1DFUP 2RD2A 2G6GA 4JXZA 1EUQA 2GAEA 2PI8A 4V194 1QTQA 4JYZA 2AE0X 4JXXA 2G5DA 5HL7S 2EGWA 1QRUA 5GAHW 4UY88 3W2WB 4L69A 3J7ZV 2ZJQS 4IOCS 5DM6S 2PNWA 1O0CA 5GAGW 1QRSA 1B75A 1ZJWA 1V6ZA 5IZNA 1D6KA 3KW2A 2CX8A 3W2VB 3AIIA 2EGVA 1VHKA 4WF9S 4WFNS 5JVHS 2NWAA 5BNZA 2PICA 1VHYA 4IOAS 1O0BA 4J3CA 1NXZA 3CF5S 4H3SA 3CZBA 1EUYA 2HZ7A 1Z85A 2ZJPS 1GTRA 1UDXA 1QRTA 3PIOS 4WFAS 3DLLS 2RE8A 4P2BA 4E8BA 5DM7S 1NYLA 5GAEW 2PJJA 4WFBS 4H4KA
chains in the Genus database with same CATH topology
3X1LB 4JXXA 2HZ7A 5HL7S 2ZJPS 1EUYA 1GTRA 3W2VB 1QRUA 3AIIA 1EXDA 1UDXA 5GAHW 1GTSA 1QRTA 3PIOS 4WCES 4WFAS 3W2WB 4U67S 4UY88 4WF9S 1FEUA 4WFNS 3J7ZV 2ZJQS 5JVHS 4IOCS 3DLLS 5BNZA 4IO9S 2RE8A 5DM6S 5GADW 3PIPS 4P2BA 2ZJRS 5JVGS 1DFUP 2RD2A 1O0CA 4IOAS 5GAGW 1QRSA 1O0BA 4JXZA 5DM7S 1EUQA 1B75A 1NYLA 1ZJWA 4V194 1QTQA 4JYZA 5GAEW 5IZNA 3CF5S 1D6KA 4H3SA 4WFBS 4H4KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JXX A;  2HZ7 A;  5HL7 S;  2ZJP S;  1EUY A;  1GTR A;  1QRU A;  3AII A;  1EXD A;  5GAH W;  1GTS A;  1QRT A;  3PIO S;  4WCE S;  4WFA S;  4UY8 8;  4U67 S;  4WF9 S;  1FEU A;  4WFN S;  3J7Z V;  2ZJQ S;  5JVH S;  4IOC S;  3DLL S;  5BNZ A;  4IO9 S;  2RE8 A;  5DM6 S;  5GAD W;  3PIP S;  4P2B A;  2ZJR S;  5JVG S;  1DFU P;  2RD2 A;  1O0C A;  4IOA S;  5GAG W;  1QRS A;  1O0B A;  4JXZ A;  5DM7 S;  1EUQ A;  1B75 A;  1NYL A;  1ZJW A;  1QTQ A;  4JYZ A;  5GAE W;  5IZN A;  3CF5 S;  1D6K A;  4H3S A;  4WFB S; 
#chains in the Genus database with same CATH topology
 3X1L B;  2Z0Y A;  1EXD A;  1GTS A;  4WCE S;  4U67 S;  1FEU A;  4IO9 S;  3PIP S;  5GAD W;  2ZJR S;  5JVG S;  1DFU P;  2RD2 A;  2G6G A;  4JXZ A;  1EUQ A;  2GAE A;  2PI8 A;  4V19 4;  1QTQ A;  4JYZ A;  2AE0 X;  4JXX A;  2G5D A;  5HL7 S;  2EGW A;  1QRU A;  5GAH W;  4UY8 8;  3W2W B;  4L69 A;  3J7Z V;  2ZJQ S;  4IOC S;  5DM6 S;  2PNW A;  1O0C A;  5GAG W;  1QRS A;  1B75 A;  1ZJW A;  1V6Z A;  5IZN A;  1D6K A;  3KW2 A;  2CX8 A;  3W2V B;  3AII A;  2EGV A;  1VHK A;  4WF9 S;  4WFN S;  5JVH S;  2NWA A;  5BNZ A;  2PIC A;  1VHY A;  4IOA S;  1O0B A;  4J3C A;  1NXZ A;  3CF5 S;  4H3S A;  3CZB A;  1EUY A;  2HZ7 A;  1Z85 A;  2ZJP S;  1GTR A;  1UDX A;  1QRT A;  3PIO S;  4WFA S;  3DLL S;  2RE8 A;  4P2B A;  4E8B A;  5DM7 S;  1NYL A;  5GAE W;  2PJJ A;  4WFB S;  4H4K A; 
#chains in the Genus database with same CATH homology
 3X1L B;  4JXX A;  2HZ7 A;  5HL7 S;  2ZJP S;  1EUY A;  1GTR A;  3W2V B;  1QRU A;  3AII A;  1EXD A;  1UDX A;  5GAH W;  1GTS A;  1QRT A;  3PIO S;  4WCE S;  4WFA S;  3W2W B;  4U67 S;  4UY8 8;  4WF9 S;  1FEU A;  4WFN S;  3J7Z V;  2ZJQ S;  5JVH S;  4IOC S;  3DLL S;  5BNZ A;  4IO9 S;  2RE8 A;  5DM6 S;  5GAD W;  3PIP S;  4P2B A;  2ZJR S;  5JVG S;  1DFU P;  2RD2 A;  1O0C A;  4IOA S;  5GAG W;  1QRS A;  1O0B A;  4JXZ A;  5DM7 S;  1EUQ A;  1B75 A;  1NYL A;  1ZJW A;  4V19 4;  1QTQ A;  4JYZ A;  5GAE W;  5IZN A;  3CF5 S;  1D6K A;  4H3S A;  4WFB S;  4H4K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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