3J7ZV

Structure of the e. coli 50s subunit with ermcl nascent chain
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
94
structure length
94
Chain Sequence
MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDHDKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Drug Sensing by the Ribosome Induces Translational Arrest via Active Site Perturbation.
pubmed doi rcsb
molecule tags Ribosome/antibiotic
molecule keywords 50S ribosomal protein L32
total genus 22
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2014-08-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
V PF01386 Ribosomal_L25p Ribosomal L25p family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 3j7zV00
4JYZA 3PIPS 4WFAS 5DM6S 1EUQA 1GTRA 4P2BA 4H3SA 1EXDA 2ZJPS 1QRUA 5BNZA 3DLLS 3AIIA 4IOAS 4WFBS 2RE8A 2RD2A 5GAGW 4WFNS 3PIOS 5GADW 4IOCS 1O0BA 4UY88 4JXZA 5JVHS 1QRSA 4IO9S 5IZNA 1NYLA 1O0CA 1QRTA 1ZJWA 1FEUA 5GAEW 5GAHW 4WCES 1DFUP 2ZJQS 5JVGS 5DM7S 3CF5S 4U67S 1B75A 3J7ZV 1EUYA 2HZ7A 2ZJRS 1QTQA 4JXXA 1D6KA 1GTSA 4WF9S 5HL7S
chains in the Genus database with same CATH superfamily
4JYZA 3KW2A 4J3CA 4WFAS 3PIPS 2AE0X 1UDXA 5DM6S 1EUQA 1GTRA 4P2BA 2GAEA 4H3SA 1EXDA 2ZJPS 1QRUA 3W2VB 2EGVA 5BNZA 3DLLS 3AIIA 4IOAS 4WFBS 2CX8A 2RD2A 2RE8A 5GAGW 4WFNS 3PIOS 5GADW 4IOCS 2PI8A 4L69A 1O0BA 4UY88 3X1LB 4JXZA 2G5DA 5JVHS 3CZBA 2PJJA 1QRSA 4IO9S 5IZNA 2EGWA 1NYLA 1O0CA 1QRTA 1ZJWA 1FEUA 5GAEW 1VHYA 1VHKA 5GAHW 4WCES 1DFUP 4H4KA 2ZJQS 2PICA 5JVGS 5DM7S 3CF5S 2PNWA 1NXZA 3W2WB 1Z85A 2G6GA 4E8BA 4V194 4U67S 1B75A 3J7ZV 2NWAA 1EUYA 2Z0YA 2HZ7A 2ZJRS 1QTQA 4JXXA 1V6ZA 1D6KA 1GTSA 4WF9S 5HL7S
chains in the Genus database with same CATH topology
4JYZA 3PIPS 4WFAS 1UDXA 5DM6S 1EUQA 1GTRA 4P2BA 4H3SA 1EXDA 2ZJPS 1QRUA 3W2VB 5BNZA 3DLLS 3AIIA 4IOAS 4WFBS 2RE8A 2RD2A 5GAGW 4WFNS 3PIOS 5GADW 4IOCS 1O0BA 4UY88 3X1LB 4JXZA 5JVHS 1QRSA 4IO9S 5IZNA 1NYLA 1O0CA 1QRTA 1ZJWA 1FEUA 5GAEW 5GAHW 4WCES 1DFUP 4H4KA 2ZJQS 5JVGS 5DM7S 3CF5S 3W2WB 4V194 4U67S 1B75A 3J7ZV 1EUYA 2HZ7A 2ZJRS 1QTQA 4JXXA 1D6KA 1GTSA 4WF9S 5HL7S
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JYZ A;  3PIP S;  4WFA S;  5DM6 S;  1EUQ A;  1GTR A;  4P2B A;  4H3S A;  1EXD A;  2ZJP S;  1QRU A;  5BNZ A;  3DLL S;  3AII A;  4IOA S;  4WFB S;  2RE8 A;  2RD2 A;  5GAG W;  4WFN S;  3PIO S;  5GAD W;  4IOC S;  1O0B A;  4UY8 8;  4JXZ A;  5JVH S;  1QRS A;  4IO9 S;  5IZN A;  1NYL A;  1O0C A;  1QRT A;  1ZJW A;  1FEU A;  5GAE W;  5GAH W;  4WCE S;  1DFU P;  2ZJQ S;  5JVG S;  5DM7 S;  3CF5 S;  4U67 S;  1B75 A;  3J7Z V;  1EUY A;  2HZ7 A;  2ZJR S;  1QTQ A;  4JXX A;  1D6K A;  1GTS A;  4WF9 S;  5HL7 S; 
#chains in the Genus database with same CATH topology
 4JYZ A;  3KW2 A;  4J3C A;  4WFA S;  3PIP S;  2AE0 X;  1UDX A;  5DM6 S;  1EUQ A;  1GTR A;  4P2B A;  2GAE A;  4H3S A;  1EXD A;  2ZJP S;  1QRU A;  3W2V B;  2EGV A;  5BNZ A;  3DLL S;  3AII A;  4IOA S;  4WFB S;  2CX8 A;  2RD2 A;  2RE8 A;  5GAG W;  4WFN S;  3PIO S;  5GAD W;  4IOC S;  2PI8 A;  4L69 A;  1O0B A;  4UY8 8;  3X1L B;  4JXZ A;  2G5D A;  5JVH S;  3CZB A;  2PJJ A;  1QRS A;  4IO9 S;  5IZN A;  2EGW A;  1NYL A;  1O0C A;  1QRT A;  1ZJW A;  1FEU A;  5GAE W;  1VHY A;  1VHK A;  5GAH W;  4WCE S;  1DFU P;  4H4K A;  2ZJQ S;  2PIC A;  5JVG S;  5DM7 S;  3CF5 S;  2PNW A;  1NXZ A;  3W2W B;  1Z85 A;  2G6G A;  4E8B A;  4V19 4;  4U67 S;  1B75 A;  3J7Z V;  2NWA A;  1EUY A;  2Z0Y A;  2HZ7 A;  2ZJR S;  1QTQ A;  4JXX A;  1V6Z A;  1D6K A;  1GTS A;  4WF9 S;  5HL7 S; 
#chains in the Genus database with same CATH homology
 4JYZ A;  3PIP S;  4WFA S;  1UDX A;  5DM6 S;  1EUQ A;  1GTR A;  4P2B A;  4H3S A;  1EXD A;  2ZJP S;  1QRU A;  3W2V B;  5BNZ A;  3DLL S;  3AII A;  4IOA S;  4WFB S;  2RE8 A;  2RD2 A;  5GAG W;  4WFN S;  3PIO S;  5GAD W;  4IOC S;  1O0B A;  4UY8 8;  3X1L B;  4JXZ A;  5JVH S;  1QRS A;  4IO9 S;  5IZN A;  1NYL A;  1O0C A;  1QRT A;  1ZJW A;  1FEU A;  5GAE W;  5GAH W;  4WCE S;  1DFU P;  4H4K A;  2ZJQ S;  5JVG S;  5DM7 S;  3CF5 S;  3W2W B;  4V19 4;  4U67 S;  1B75 A;  3J7Z V;  1EUY A;  2HZ7 A;  2ZJR S;  1QTQ A;  4JXX A;  1D6K A;  1GTS A;  4WF9 S;  5HL7 S; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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