1FJG | Genus

Total Genus 66

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	66
sequence length	208
structure length	208
Chain Sequence	GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVQENLVIEFYSR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 208 atoms

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208 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ribosome
publication title	Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics pubmed doi rcsb
molecule keywords	16S RIBOSOMAL RNA
total genus	66
structure length	208
sequence length	208
ec nomenclature
pdb deposition date	2000-08-08

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
D	PF00163	Ribosomal_S4	Ribosomal protein S4/S9 N-terminal domain
D	PF01479	S4	S4 domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1050.10	Mainly Alpha	Orthogonal Bundle	Ribosomal Protein S4 Delta 41; Chain A, domain 1	Ribosomal Protein S4 Delta 41; Chain A, domain 1	1fjgD01
3.10.290.10	Alpha Beta	Roll	Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A	RNA-binding S4 domain	1fjgD02

2JANA 4JI0D 4JI8D 4DV7D 2UXDD 4OUDA 2UXBD 4LF8D 5LMND 4LF5D 2K6PA 1C06A 4JI3D 3T1HD 1H3EA 4DR1D 1IBMD 2UUCD 4B3TD 1VIOA 4JI4D 1DM9A 4DUYD 4DV2D 1KSVA 2UUBD 5BR8D 4YHHD 4GKKD 1KSLA 1JH3A 4X66D 4DV5D 4JI7D 4JV5D 1HNWD 1HR0D 4NXMD 1XNQD 1IBLD 1N33D 1FJGD 2ISTA 4LF6D 4DV3D 4LF9D 4X65D 4GKJD 4X64D 4YY3D 4AQYD 3T1YD 1IBKD 2HHHD 4LF7D 1HNXD 1N36D 5LMUD 2VQED 4DV4D 1N32D 4DR2D 3DH3A 2E5LD 4B3SD 1P9KA 1KSKA 4K0KD 3OTOD 4LF4D 2F4VD 4JI6D 4DV1D 5IWAD 4B3MD 4LFAD 3KBGA 3HP7A 1XMQD 1J5ED 4JI1D 1XMOD 2VQFD 4B3RD 2ZM6D 2UU9D 4LGTA 4DR6D 1C05A 1H3FA 4JI2D 4LFBD 4JI5D 4DR3D 4OX9D 2UUAD 4DR4D 4JYAD 2KTLA 4X62D 4DV0D 2UXCD 1XNRD 4NXND 4KHPD 4DUZD 4LFCD 4DR7D 4DR5D 1FKAD 4DV6D 1HNZD 1I94D 1N34D
chains in the Genus database with same CATH superfamily

2JANA 4JI0D 4JI8D 4DV7D 2UXDD 4OUDA 2UXBD 4LF8D 5LMND 3J81E 4LF5D 5FLXE 2K6PA 1C06A 4JI3D 3T1HD 1H3EA 5A2QE 4DR1D 1IBMD 2UUCD 4B3TD 5FQ2B 1VIOA 4JI4D 1DM9A 4DUYD 4DV2D 3J80E 1KSVA 2UUBD 5BR8D 4YHHD 4GKKD 1KSLA 1JH3A 4X66D 4DV5D 4JI7D 4JV5D 1HNWD 1HR0D 3J7AF 4NXMD 1XNQD 4II2A 1IBLD 1N33D 1FJGD 2ISTA 3ONHA 4LF6D 4DV3D 5LL6S 2L3NA 4LF9D 4X65D 4GKJD 4X64D 4YY3D 4AQYD 3T1YD 1IBKD 2HHHD 1Y8RB 4LF7D 1HNXD 1N36D 5LMUD 2VQED 3JAME 4DV4D 3FN1A 1N32D 4DR2D 3CMMA 4II3A 3DH3A 2E5LD 4B3SD 1P9KA 1KSKA 4K0KD 3OTOD 4LF4D 2F4VD 3ONGA 4JI6D 4DV1D 5IWAD 4B3MD 4LFAD 3KBGA 3HP7A 1XMQD 3KYCB 5KNLA 1J5ED 4JI1D 1XMOD 2VQFD 4B3RD 4NNJA 2LQ7A 2ZM6D 2UU9D 4LGTA 4DR6D 1Y8XB 1C05A 1H3FA 4JI2D 4LFBD 4JI5D 2NVUB 4DR3D 5IT9E 3KYDB 4OX9D 2UUAD 4DR4D 2I1SA 4W5VB 4JYAD 1Y8QB 4X62D 4DV0D 2UXCD 2KTLA 1XNRD 4NXND 4KHPD 4DUZD 4LFCD 4DR7D 4DR5D 1FKAD 4DV6D 1HNZD 1I94D 2ZTBA 1N34D
chains in the Genus database with same CATH topology

2JANA 4JI0D 4JI8D 4DV7D 2UXDD 4OUDA 2UXBD 4LF8D 5LMND 4LF5D 2K6PA 1C06A 4JI3D 3T1HD 1H3EA 4DR1D 1IBMD 2UUCD 4B3TD 1VIOA 4JI4D 1DM9A 4DUYD 4DV2D 1KSVA 2UUBD 5BR8D 4YHHD 4GKKD 1KSLA 1JH3A 4X66D 4DV5D 4JI7D 4JV5D 1HNWD 1HR0D 4NXMD 1XNQD 1IBLD 1N33D 1FJGD 2ISTA 4LF6D 4DV3D 2L3NA 4LF9D 4X65D 4GKJD 4X64D 4YY3D 4AQYD 3T1YD 1IBKD 2HHHD 4LF7D 1HNXD 1N36D 5LMUD 2VQED 4DV4D 1N32D 4DR2D 3DH3A 2E5LD 4B3SD 1P9KA 1KSKA 4K0KD 3OTOD 4LF4D 2F4VD 4JI6D 4DV1D 5IWAD 4B3MD 4LFAD 3KBGA 3HP7A 1XMQD 1J5ED 4JI1D 1XMOD 2VQFD 4B3RD 2ZM6D 2UU9D 4LGTA 4DR6D 1C05A 1H3FA 4JI2D 4LFBD 4JI5D 4DR3D 4OX9D 2UUAD 4DR4D 4JYAD 2KTLA 4X62D 4DV0D 2UXCD 1XNRD 4NXND 4KHPD 4DUZD 4LFCD 4DR7D 4DR5D 1FKAD 4DV6D 1HNZD 1I94D 1N34D
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2JAN A;  4JI0 D;  4JI8 D;  4DV7 D;  2UXD D;  4OUD A;  2UXB D;  4LF8 D;  5LMN D;  4LF5 D;  2K6P A;  1C06 A;  4JI3 D;  3T1H D;  1H3E A;  4DR1 D;  1IBM D;  2UUC D;  4B3T D;  1VIO A;  4JI4 D;  1DM9 A;  4DUY D;  4DV2 D;  1KSV A;  2UUB D;  5BR8 D;  4YHH D;  4GKK D;  1KSL A;  1JH3 A;  4X66 D;  4DV5 D;  4JI7 D;  4JV5 D;  1HNW D;  1HR0 D;  4NXM D;  1XNQ D;  1IBL D;  1N33 D;  1FJG D;  2IST A;  4LF6 D;  4DV3 D;  4LF9 D;  4X65 D;  4GKJ D;  4X64 D;  4YY3 D;  4AQY D;  3T1Y D;  1IBK D;  2HHH D;  4LF7 D;  1HNX D;  1N36 D;  5LMU D;  2VQE D;  4DV4 D;  1N32 D;  4DR2 D;  3DH3 A;  2E5L D;  4B3S D;  1P9K A;  1KSK A;  4K0K D;  3OTO D;  4LF4 D;  2F4V D;  4JI6 D;  4DV1 D;  5IWA D;  4B3M D;  4LFA D;  3KBG A;  3HP7 A;  1XMQ D;  1J5E D;  4JI1 D;  1XMO D;  2VQF D;  4B3R D;  2ZM6 D;  2UU9 D;  4LGT A;  4DR6 D;  1C05 A;  1H3F A;  4JI2 D;  4LFB D;  4JI5 D;  4DR3 D;  4OX9 D;  2UUA D;  4DR4 D;  4JYA D;  2KTL A;  4X62 D;  4DV0 D;  2UXC D;  1XNR D;  4NXN D;  4KHP D;  4DUZ D;  4LFC D;  4DR7 D;  4DR5 D;  1FKA D;  4DV6 D;  1HNZ D;  1I94 D;  1N34 D; 
#chains in the Genus database with same CATH topology
 2JAN A;  4JI0 D;  4JI8 D;  4DV7 D;  2UXD D;  4OUD A;  2UXB D;  4LF8 D;  5LMN D;  3J81 E;  4LF5 D;  5FLX E;  2K6P A;  1C06 A;  4JI3 D;  3T1H D;  1H3E A;  5A2Q E;  4DR1 D;  1IBM D;  2UUC D;  4B3T D;  5FQ2 B;  1VIO A;  4JI4 D;  1DM9 A;  4DUY D;  4DV2 D;  3J80 E;  1KSV A;  2UUB D;  5BR8 D;  4YHH D;  4GKK D;  1KSL A;  1JH3 A;  4X66 D;  4DV5 D;  4JI7 D;  4JV5 D;  1HNW D;  1HR0 D;  3J7A F;  4NXM D;  1XNQ D;  4II2 A;  1IBL D;  1N33 D;  1FJG D;  2IST A;  3ONH A;  4LF6 D;  4DV3 D;  5LL6 S;  2L3N A;  4LF9 D;  4X65 D;  4GKJ D;  4X64 D;  4YY3 D;  4AQY D;  3T1Y D;  1IBK D;  2HHH D;  1Y8R B;  4LF7 D;  1HNX D;  1N36 D;  5LMU D;  2VQE D;  3JAM E;  4DV4 D;  3FN1 A;  1N32 D;  4DR2 D;  3CMM A;  4II3 A;  3DH3 A;  2E5L D;  4B3S D;  1P9K A;  1KSK A;  4K0K D;  3OTO D;  4LF4 D;  2F4V D;  3ONG A;  4JI6 D;  4DV1 D;  5IWA D;  4B3M D;  4LFA D;  3KBG A;  3HP7 A;  1XMQ D;  3KYC B;  5KNL A;  1J5E D;  4JI1 D;  1XMO D;  2VQF D;  4B3R D;  4NNJ A;  2LQ7 A;  2ZM6 D;  2UU9 D;  4LGT A;  4DR6 D;  1Y8X B;  1C05 A;  1H3F A;  4JI2 D;  4LFB D;  4JI5 D;  2NVU B;  4DR3 D;  5IT9 E;  3KYD B;  4OX9 D;  2UUA D;  4DR4 D;  2I1S A;  4W5V B;  4JYA D;  1Y8Q B;  4X62 D;  4DV0 D;  2UXC D;  2KTL A;  1XNR D;  4NXN D;  4KHP D;  4DUZ D;  4LFC D;  4DR7 D;  4DR5 D;  1FKA D;  4DV6 D;  1HNZ D;  1I94 D;  2ZTB A;  1N34 D; 
#chains in the Genus database with same CATH homology
 2JAN A;  4JI0 D;  4JI8 D;  4DV7 D;  2UXD D;  4OUD A;  2UXB D;  4LF8 D;  5LMN D;  4LF5 D;  2K6P A;  1C06 A;  4JI3 D;  3T1H D;  1H3E A;  4DR1 D;  1IBM D;  2UUC D;  4B3T D;  1VIO A;  4JI4 D;  1DM9 A;  4DUY D;  4DV2 D;  1KSV A;  2UUB D;  5BR8 D;  4YHH D;  4GKK D;  1KSL A;  1JH3 A;  4X66 D;  4DV5 D;  4JI7 D;  4JV5 D;  1HNW D;  1HR0 D;  4NXM D;  1XNQ D;  1IBL D;  1N33 D;  1FJG D;  2IST A;  4LF6 D;  4DV3 D;  2L3N A;  4LF9 D;  4X65 D;  4GKJ D;  4X64 D;  4YY3 D;  4AQY D;  3T1Y D;  1IBK D;  2HHH D;  4LF7 D;  1HNX D;  1N36 D;  5LMU D;  2VQE D;  4DV4 D;  1N32 D;  4DR2 D;  3DH3 A;  2E5L D;  4B3S D;  1P9K A;  1KSK A;  4K0K D;  3OTO D;  4LF4 D;  2F4V D;  4JI6 D;  4DV1 D;  5IWA D;  4B3M D;  4LFA D;  3KBG A;  3HP7 A;  1XMQ D;  1J5E D;  4JI1 D;  1XMO D;  2VQF D;  4B3R D;  2ZM6 D;  2UU9 D;  4LGT A;  4DR6 D;  1C05 A;  1H3F A;  4JI2 D;  4LFB D;  4JI5 D;  4DR3 D;  4OX9 D;  2UUA D;  4DR4 D;  4JYA D;  2KTL A;  4X62 D;  4DV0 D;  2UXC D;  1XNR D;  4NXN D;  4KHP D;  4DUZ D;  4LFC D;  4DR7 D;  4DR5 D;  1FKA D;  4DV6 D;  1HNZ D;  1I94 D;  1N34 D;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1FJGD

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations