1FKAD

Structure of functionally activated small ribosomal subunit at 3.3 a resolution
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
161
structure length
161
Chain Sequence
RRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQLVIEFYSR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 16S RIBOSOMAL RNA
total genus 22
structure length 161
sequence length 161
ec nomenclature
pdb deposition date 2000-08-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00163 Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain
D PF01479 S4 S4 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1050.10 Mainly Alpha Orthogonal Bundle Ribosomal Protein S4 Delta 41; Chain A, domain 1 Ribosomal Protein S4 Delta 41; Chain A, domain 1 1fkaD01
3.10.290.10 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A RNA-binding S4 domain 1fkaD02
4K0KD 4JYAD 4GKJD 1XNQD 1IBLD 4X65D 4DV6D 1HNWD 4LFBD 1XMQD 4LF4D 4DUZD 4LF9D 3OTOD 4LF7D 1VIOA 3HP7A 4JI0D 4NXMD 1C06A 5BR8D 4NXND 1N33D 4DR7D 4OX9D 4OUDA 4JV5D 4DR2D 4AQYD 4LGTA 2VQED 2UUAD 4DV5D 1KSLA 3DH3A 4B3SD 3T1YD 2UXCD 2KTLA 2ZM6D 1XMOD 4DV0D 4DV4D 1FJGD 4DR1D 4GKKD 4JI8D 1J5ED 4DR3D 1H3EA 4B3RD 4LF6D 1HNZD 2K6PA 4B3TD 2HHHD 3T1HD 4DUYD 2JANA 4DR5D 4DV3D 5LMUD 4JI1D 4LF8D 1H3FA 1I94D 1IBKD 4B3MD 1XNRD 2F4VD 3KBGA 4DV2D 4X64D 4LFAD 4DV7D 1DM9A 4X66D 2UXBD 4JI5D 1P9KA 1N32D 1HNXD 2ISTA 4DR6D 1KSKA 4JI4D 2UXDD 4YY3D 1IBMD 5IWAD 2VQFD 1FKAD 5LMND 2UU9D 2UUCD 4DR4D 1KSVA 1C05A 4YHHD 1N34D 4JI2D 1N36D 1JH3A 4KHPD 2UUBD 4JI6D 4LFCD 4X62D 4DV1D 4JI3D 1HR0D 4JI7D 2E5LD 4LF5D
chains in the Genus database with same CATH superfamily
4K0KD 5IT9E 1Y8XB 4JYAD 4GKJD 1XNQD 1IBLD 4X65D 4DV6D 1HNWD 2ZTBA 4LFBD 1XMQD 2I1SA 4LF4D 4DUZD 4LF9D 3ONHA 3OTOD 4LF7D 1VIOA 3HP7A 4JI0D 4NXMD 1C06A 3ONGA 5BR8D 4NXND 1N33D 4NNJA 4DR7D 4OX9D 4OUDA 4JV5D 4DR2D 4AQYD 4LGTA 2VQED 2UUAD 4DV5D 1KSLA 3DH3A 4B3SD 3T1YD 2UXCD 2KTLA 3J7AF 2ZM6D 1XMOD 4DV0D 5FLXE 4DV4D 3J81E 1Y8QB 3JAME 5A2QE 5KNLA 2NVUB 1FJGD 2LQ7A 4DR1D 4GKKD 4JI8D 1Y8RB 1J5ED 4DR3D 2L3NA 1H3EA 4B3RD 4LF6D 1HNZD 2K6PA 4B3TD 3KYCB 2HHHD 4II2A 3T1HD 4DUYD 2JANA 4DR5D 4DV3D 5LMUD 4JI1D 4LF8D 1H3FA 1I94D 1IBKD 4B3MD 1XNRD 2F4VD 4II3A 3KBGA 4DV2D 4X64D 4LFAD 4DV7D 1DM9A 4W5VB 4X66D 3FN1A 2UXBD 4JI5D 1P9KA 1N32D 1HNXD 2ISTA 4DR6D 1KSKA 4JI4D 5FQ2B 2UXDD 4YY3D 1IBMD 5IWAD 2VQFD 1FKAD 5LMND 3KYDB 2UU9D 2UUCD 3J80E 5LL6S 4DR4D 1KSVA 1C05A 4YHHD 1N34D 4JI2D 1N36D 1JH3A 3CMMA 4KHPD 2UUBD 4JI6D 4LFCD 4X62D 4DV1D 4JI3D 1HR0D 4JI7D 2E5LD 4LF5D
chains in the Genus database with same CATH topology
4K0KD 4JYAD 4GKJD 1XNQD 1IBLD 4X65D 4DV6D 1HNWD 4LFBD 1XMQD 4LF4D 4DUZD 4LF9D 3OTOD 4LF7D 1VIOA 3HP7A 4JI0D 4NXMD 1C06A 5BR8D 4NXND 1N33D 4DR7D 4OX9D 4OUDA 4JV5D 4DR2D 4AQYD 4LGTA 2VQED 2UUAD 4DV5D 1KSLA 3DH3A 4B3SD 3T1YD 2UXCD 2KTLA 2ZM6D 1XMOD 4DV0D 4DV4D 1FJGD 4DR1D 4GKKD 4JI8D 1J5ED 4DR3D 2L3NA 1H3EA 4B3RD 4LF6D 1HNZD 2K6PA 4B3TD 2HHHD 3T1HD 4DUYD 2JANA 4DR5D 4DV3D 5LMUD 4JI1D 4LF8D 1H3FA 1I94D 1IBKD 4B3MD 1XNRD 2F4VD 3KBGA 4DV2D 4X64D 4LFAD 4DV7D 1DM9A 4X66D 2UXBD 4JI5D 1P9KA 1N32D 1HNXD 2ISTA 4DR6D 1KSKA 4JI4D 2UXDD 4YY3D 1IBMD 5IWAD 2VQFD 1FKAD 5LMND 2UU9D 2UUCD 4DR4D 1KSVA 1C05A 4YHHD 1N34D 4JI2D 1N36D 1JH3A 4KHPD 2UUBD 4JI6D 4LFCD 4X62D 4DV1D 4JI3D 1HR0D 4JI7D 2E5LD 4LF5D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4K0K D;  4JYA D;  4GKJ D;  1XNQ D;  1IBL D;  4X65 D;  4DV6 D;  1HNW D;  4LFB D;  1XMQ D;  4LF4 D;  4DUZ D;  4LF9 D;  3OTO D;  4LF7 D;  1VIO A;  3HP7 A;  4JI0 D;  4NXM D;  1C06 A;  5BR8 D;  4NXN D;  1N33 D;  4DR7 D;  4OX9 D;  4OUD A;  4JV5 D;  4DR2 D;  4AQY D;  4LGT A;  2VQE D;  2UUA D;  4DV5 D;  1KSL A;  3DH3 A;  4B3S D;  3T1Y D;  2UXC D;  2KTL A;  2ZM6 D;  1XMO D;  4DV0 D;  4DV4 D;  1FJG D;  4DR1 D;  4GKK D;  4JI8 D;  1J5E D;  4DR3 D;  1H3E A;  4B3R D;  4LF6 D;  1HNZ D;  2K6P A;  4B3T D;  2HHH D;  3T1H D;  4DUY D;  2JAN A;  4DR5 D;  4DV3 D;  5LMU D;  4JI1 D;  4LF8 D;  1H3F A;  1I94 D;  1IBK D;  4B3M D;  1XNR D;  2F4V D;  3KBG A;  4DV2 D;  4X64 D;  4LFA D;  4DV7 D;  1DM9 A;  4X66 D;  2UXB D;  4JI5 D;  1P9K A;  1N32 D;  1HNX D;  2IST A;  4DR6 D;  1KSK A;  4JI4 D;  2UXD D;  4YY3 D;  1IBM D;  5IWA D;  2VQF D;  1FKA D;  5LMN D;  2UU9 D;  2UUC D;  4DR4 D;  1KSV A;  1C05 A;  4YHH D;  1N34 D;  4JI2 D;  1N36 D;  1JH3 A;  4KHP D;  2UUB D;  4JI6 D;  4LFC D;  4X62 D;  4DV1 D;  4JI3 D;  1HR0 D;  4JI7 D;  2E5L D;  4LF5 D; 
#chains in the Genus database with same CATH topology
 4K0K D;  5IT9 E;  1Y8X B;  4JYA D;  4GKJ D;  1XNQ D;  1IBL D;  4X65 D;  4DV6 D;  1HNW D;  2ZTB A;  4LFB D;  1XMQ D;  2I1S A;  4LF4 D;  4DUZ D;  4LF9 D;  3ONH A;  3OTO D;  4LF7 D;  1VIO A;  3HP7 A;  4JI0 D;  4NXM D;  1C06 A;  3ONG A;  5BR8 D;  4NXN D;  1N33 D;  4NNJ A;  4DR7 D;  4OX9 D;  4OUD A;  4JV5 D;  4DR2 D;  4AQY D;  4LGT A;  2VQE D;  2UUA D;  4DV5 D;  1KSL A;  3DH3 A;  4B3S D;  3T1Y D;  2UXC D;  2KTL A;  3J7A F;  2ZM6 D;  1XMO D;  4DV0 D;  5FLX E;  4DV4 D;  3J81 E;  1Y8Q B;  3JAM E;  5A2Q E;  5KNL A;  2NVU B;  1FJG D;  2LQ7 A;  4DR1 D;  4GKK D;  4JI8 D;  1Y8R B;  1J5E D;  4DR3 D;  2L3N A;  1H3E A;  4B3R D;  4LF6 D;  1HNZ D;  2K6P A;  4B3T D;  3KYC B;  2HHH D;  4II2 A;  3T1H D;  4DUY D;  2JAN A;  4DR5 D;  4DV3 D;  5LMU D;  4JI1 D;  4LF8 D;  1H3F A;  1I94 D;  1IBK D;  4B3M D;  1XNR D;  2F4V D;  4II3 A;  3KBG A;  4DV2 D;  4X64 D;  4LFA D;  4DV7 D;  1DM9 A;  4W5V B;  4X66 D;  3FN1 A;  2UXB D;  4JI5 D;  1P9K A;  1N32 D;  1HNX D;  2IST A;  4DR6 D;  1KSK A;  4JI4 D;  5FQ2 B;  2UXD D;  4YY3 D;  1IBM D;  5IWA D;  2VQF D;  1FKA D;  5LMN D;  3KYD B;  2UU9 D;  2UUC D;  3J80 E;  5LL6 S;  4DR4 D;  1KSV A;  1C05 A;  4YHH D;  1N34 D;  4JI2 D;  1N36 D;  1JH3 A;  3CMM A;  4KHP D;  2UUB D;  4JI6 D;  4LFC D;  4X62 D;  4DV1 D;  4JI3 D;  1HR0 D;  4JI7 D;  2E5L D;  4LF5 D; 
#chains in the Genus database with same CATH homology
 4K0K D;  4JYA D;  4GKJ D;  1XNQ D;  1IBL D;  4X65 D;  4DV6 D;  1HNW D;  4LFB D;  1XMQ D;  4LF4 D;  4DUZ D;  4LF9 D;  3OTO D;  4LF7 D;  1VIO A;  3HP7 A;  4JI0 D;  4NXM D;  1C06 A;  5BR8 D;  4NXN D;  1N33 D;  4DR7 D;  4OX9 D;  4OUD A;  4JV5 D;  4DR2 D;  4AQY D;  4LGT A;  2VQE D;  2UUA D;  4DV5 D;  1KSL A;  3DH3 A;  4B3S D;  3T1Y D;  2UXC D;  2KTL A;  2ZM6 D;  1XMO D;  4DV0 D;  4DV4 D;  1FJG D;  4DR1 D;  4GKK D;  4JI8 D;  1J5E D;  4DR3 D;  2L3N A;  1H3E A;  4B3R D;  4LF6 D;  1HNZ D;  2K6P A;  4B3T D;  2HHH D;  3T1H D;  4DUY D;  2JAN A;  4DR5 D;  4DV3 D;  5LMU D;  4JI1 D;  4LF8 D;  1H3F A;  1I94 D;  1IBK D;  4B3M D;  1XNR D;  2F4V D;  3KBG A;  4DV2 D;  4X64 D;  4LFA D;  4DV7 D;  1DM9 A;  4X66 D;  2UXB D;  4JI5 D;  1P9K A;  1N32 D;  1HNX D;  2IST A;  4DR6 D;  1KSK A;  4JI4 D;  2UXD D;  4YY3 D;  1IBM D;  5IWA D;  2VQF D;  1FKA D;  5LMN D;  2UU9 D;  2UUC D;  4DR4 D;  1KSV A;  1C05 A;  4YHH D;  1N34 D;  4JI2 D;  1N36 D;  1JH3 A;  4KHP D;  2UUB D;  4JI6 D;  4LFC D;  4X62 D;  4DV1 D;  4JI3 D;  1HR0 D;  4JI7 D;  2E5L D;  4LF5 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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