2UXCD

Crystal structure of an extended trna anticodon stem loop in complex with its cognate mrna ucgu in the context of the thermus thermophilus 30s subunit.
Total Genus 61
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
208
structure length
208
Chain Sequence
GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQLVIEFYSR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structures of Trnas with an Expanded Anticodon Loop in the Decoding Center of the 30S Ribosomal Subunit.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 16S RIBOSOMAL RNA
total genus 61
structure length 208
sequence length 208
ec nomenclature
pdb deposition date 2007-03-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00163 Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain
D PF01479 S4 S4 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1050.10 Mainly Alpha Orthogonal Bundle Ribosomal Protein S4 Delta 41; Chain A, domain 1 Ribosomal Protein S4 Delta 41; Chain A, domain 1 2uxcD01
3.10.290.10 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A RNA-binding S4 domain 2uxcD02
4DV7D 4LF8D 2E5LD 4DR5D 1N34D 3DH3A 1HNWD 2VQED 4LFBD 4JI4D 1FJGD 2ISTA 2UUBD 4DR2D 1N32D 4YY3D 3HP7A 1KSVA 4DR7D 1KSLA 1XMOD 4DR4D 4GKJD 1XNRD 4DUYD 4DV0D 4DV4D 3T1YD 1IBLD 4OX9D 5IWAD 1XMQD 4B3TD 4LGTA 1I94D 4OUDA 1FKAD 4X66D 3T1HD 1VIOA 4LF5D 1HNXD 4LF6D 1IBMD 4DV1D 4K0KD 2UU9D 4DV2D 2F4VD 4X64D 4LF4D 3KBGA 2UXDD 2UXCD 4KHPD 4DV6D 5LMND 4LF9D 2K6PA 4JYAD 4DR1D 4NXMD 4X65D 2ZM6D 4GKKD 4DR6D 4DUZD 1JH3A 4JI3D 4NXND 4B3RD 4JI1D 2JANA 4DR3D 1C06A 4AQYD 2UUAD 4LFAD 3OTOD 4B3MD 4DV5D 4LF7D 4JI2D 4JI0D 1HNZD 1P9KA 4B3SD 1KSKA 2UUCD 5BR8D 1N33D 2VQFD 5LMUD 4DV3D 4JI8D 4JI6D 1H3FA 1H3EA 2KTLA 4JI5D 1C05A 1J5ED 2HHHD 1HR0D 1XNQD 2UXBD 1N36D 4JI7D 4YHHD 4JV5D 1DM9A 1IBKD 4X62D 4LFCD
chains in the Genus database with same CATH superfamily
4DV7D 4LF8D 2E5LD 4DR5D 1N34D 3KYDB 3DH3A 1HNWD 2VQED 4LFBD 4JI4D 5LL6S 1FJGD 5FQ2B 2ISTA 2UUBD 4DR2D 1N32D 4YY3D 3HP7A 1KSVA 4DR7D 1KSLA 1XMOD 4DR4D 2ZTBA 4GKJD 1XNRD 3KYCB 4DUYD 5FLXE 4DV0D 4DV4D 3JAME 1Y8RB 3T1YD 1IBLD 4OX9D 5IWAD 3ONGA 1XMQD 4B3TD 4LGTA 1I94D 1Y8QB 4OUDA 1FKAD 4X66D 3T1HD 1VIOA 4LF5D 5KNLA 1HNXD 2I1SA 4LF6D 1IBMD 4DV1D 4K0KD 2UU9D 4DV2D 2F4VD 4X64D 4LF4D 3KBGA 2UXDD 3J7AF 2UXCD 4KHPD 4DV6D 5LMND 5IT9E 4LF9D 2K6PA 3J80E 3FN1A 4JYAD 2NVUB 2L3NA 3CMMA 4W5VB 4DR1D 4NXMD 4X65D 2ZM6D 4GKKD 4DR6D 3J81E 4II3A 4DUZD 1JH3A 4JI3D 4NXND 4B3RD 4NNJA 4JI1D 2JANA 4DR3D 1C06A 4AQYD 4II2A 2UUAD 4LFAD 3OTOD 4B3MD 4DV5D 4LF7D 4JI2D 4JI0D 1HNZD 1P9KA 4B3SD 1KSKA 2UUCD 5BR8D 1N33D 2VQFD 5LMUD 4DV3D 4JI8D 4JI6D 1Y8XB 1H3FA 1H3EA 2KTLA 4JI5D 1C05A 2LQ7A 1J5ED 2HHHD 1HR0D 1XNQD 3ONHA 2UXBD 1N36D 4JI7D 4YHHD 4JV5D 1DM9A 1IBKD 5A2QE 4X62D 4LFCD
chains in the Genus database with same CATH topology
4DV7D 4LF8D 2E5LD 4DR5D 1N34D 3DH3A 1HNWD 2VQED 4LFBD 4JI4D 1FJGD 2ISTA 2UUBD 4DR2D 1N32D 4YY3D 3HP7A 1KSVA 4DR7D 1KSLA 1XMOD 4DR4D 4GKJD 1XNRD 4DUYD 4DV0D 4DV4D 3T1YD 1IBLD 4OX9D 5IWAD 1XMQD 4B3TD 4LGTA 1I94D 4OUDA 1FKAD 4X66D 3T1HD 1VIOA 4LF5D 1HNXD 4LF6D 1IBMD 4DV1D 4K0KD 2UU9D 4DV2D 2F4VD 4X64D 4LF4D 3KBGA 2UXDD 2UXCD 4KHPD 4DV6D 5LMND 4LF9D 2K6PA 4JYAD 2L3NA 4DR1D 4NXMD 4X65D 2ZM6D 4GKKD 4DR6D 4DUZD 1JH3A 4JI3D 4NXND 4B3RD 4JI1D 2JANA 4DR3D 1C06A 4AQYD 2UUAD 4LFAD 3OTOD 4B3MD 4DV5D 4LF7D 4JI2D 4JI0D 1HNZD 1P9KA 4B3SD 1KSKA 2UUCD 5BR8D 1N33D 2VQFD 5LMUD 4DV3D 4JI8D 4JI6D 1H3FA 1H3EA 2KTLA 4JI5D 1C05A 1J5ED 2HHHD 1HR0D 1XNQD 2UXBD 1N36D 4JI7D 4YHHD 4JV5D 1DM9A 1IBKD 4X62D 4LFCD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DV7 D;  4LF8 D;  2E5L D;  4DR5 D;  1N34 D;  3DH3 A;  1HNW D;  2VQE D;  4LFB D;  4JI4 D;  1FJG D;  2IST A;  2UUB D;  4DR2 D;  1N32 D;  4YY3 D;  3HP7 A;  1KSV A;  4DR7 D;  1KSL A;  1XMO D;  4DR4 D;  4GKJ D;  1XNR D;  4DUY D;  4DV0 D;  4DV4 D;  3T1Y D;  1IBL D;  4OX9 D;  5IWA D;  1XMQ D;  4B3T D;  4LGT A;  1I94 D;  4OUD A;  1FKA D;  4X66 D;  3T1H D;  1VIO A;  4LF5 D;  1HNX D;  4LF6 D;  1IBM D;  4DV1 D;  4K0K D;  2UU9 D;  4DV2 D;  2F4V D;  4X64 D;  4LF4 D;  3KBG A;  2UXD D;  2UXC D;  4KHP D;  4DV6 D;  5LMN D;  4LF9 D;  2K6P A;  4JYA D;  4DR1 D;  4NXM D;  4X65 D;  2ZM6 D;  4GKK D;  4DR6 D;  4DUZ D;  1JH3 A;  4JI3 D;  4NXN D;  4B3R D;  4JI1 D;  2JAN A;  4DR3 D;  1C06 A;  4AQY D;  2UUA D;  4LFA D;  3OTO D;  4B3M D;  4DV5 D;  4LF7 D;  4JI2 D;  4JI0 D;  1HNZ D;  1P9K A;  4B3S D;  1KSK A;  2UUC D;  5BR8 D;  1N33 D;  2VQF D;  5LMU D;  4DV3 D;  4JI8 D;  4JI6 D;  1H3F A;  1H3E A;  2KTL A;  4JI5 D;  1C05 A;  1J5E D;  2HHH D;  1HR0 D;  1XNQ D;  2UXB D;  1N36 D;  4JI7 D;  4YHH D;  4JV5 D;  1DM9 A;  1IBK D;  4X62 D;  4LFC D; 
#chains in the Genus database with same CATH topology
 4DV7 D;  4LF8 D;  2E5L D;  4DR5 D;  1N34 D;  3KYD B;  3DH3 A;  1HNW D;  2VQE D;  4LFB D;  4JI4 D;  5LL6 S;  1FJG D;  5FQ2 B;  2IST A;  2UUB D;  4DR2 D;  1N32 D;  4YY3 D;  3HP7 A;  1KSV A;  4DR7 D;  1KSL A;  1XMO D;  4DR4 D;  2ZTB A;  4GKJ D;  1XNR D;  3KYC B;  4DUY D;  5FLX E;  4DV0 D;  4DV4 D;  3JAM E;  1Y8R B;  3T1Y D;  1IBL D;  4OX9 D;  5IWA D;  3ONG A;  1XMQ D;  4B3T D;  4LGT A;  1I94 D;  1Y8Q B;  4OUD A;  1FKA D;  4X66 D;  3T1H D;  1VIO A;  4LF5 D;  5KNL A;  1HNX D;  2I1S A;  4LF6 D;  1IBM D;  4DV1 D;  4K0K D;  2UU9 D;  4DV2 D;  2F4V D;  4X64 D;  4LF4 D;  3KBG A;  2UXD D;  3J7A F;  2UXC D;  4KHP D;  4DV6 D;  5LMN D;  5IT9 E;  4LF9 D;  2K6P A;  3J80 E;  3FN1 A;  4JYA D;  2NVU B;  2L3N A;  3CMM A;  4W5V B;  4DR1 D;  4NXM D;  4X65 D;  2ZM6 D;  4GKK D;  4DR6 D;  3J81 E;  4II3 A;  4DUZ D;  1JH3 A;  4JI3 D;  4NXN D;  4B3R D;  4NNJ A;  4JI1 D;  2JAN A;  4DR3 D;  1C06 A;  4AQY D;  4II2 A;  2UUA D;  4LFA D;  3OTO D;  4B3M D;  4DV5 D;  4LF7 D;  4JI2 D;  4JI0 D;  1HNZ D;  1P9K A;  4B3S D;  1KSK A;  2UUC D;  5BR8 D;  1N33 D;  2VQF D;  5LMU D;  4DV3 D;  4JI8 D;  4JI6 D;  1Y8X B;  1H3F A;  1H3E A;  2KTL A;  4JI5 D;  1C05 A;  2LQ7 A;  1J5E D;  2HHH D;  1HR0 D;  1XNQ D;  3ONH A;  2UXB D;  1N36 D;  4JI7 D;  4YHH D;  4JV5 D;  1DM9 A;  1IBK D;  5A2Q E;  4X62 D;  4LFC D; 
#chains in the Genus database with same CATH homology
 4DV7 D;  4LF8 D;  2E5L D;  4DR5 D;  1N34 D;  3DH3 A;  1HNW D;  2VQE D;  4LFB D;  4JI4 D;  1FJG D;  2IST A;  2UUB D;  4DR2 D;  1N32 D;  4YY3 D;  3HP7 A;  1KSV A;  4DR7 D;  1KSL A;  1XMO D;  4DR4 D;  4GKJ D;  1XNR D;  4DUY D;  4DV0 D;  4DV4 D;  3T1Y D;  1IBL D;  4OX9 D;  5IWA D;  1XMQ D;  4B3T D;  4LGT A;  1I94 D;  4OUD A;  1FKA D;  4X66 D;  3T1H D;  1VIO A;  4LF5 D;  1HNX D;  4LF6 D;  1IBM D;  4DV1 D;  4K0K D;  2UU9 D;  4DV2 D;  2F4V D;  4X64 D;  4LF4 D;  3KBG A;  2UXD D;  2UXC D;  4KHP D;  4DV6 D;  5LMN D;  4LF9 D;  2K6P A;  4JYA D;  2L3N A;  4DR1 D;  4NXM D;  4X65 D;  2ZM6 D;  4GKK D;  4DR6 D;  4DUZ D;  1JH3 A;  4JI3 D;  4NXN D;  4B3R D;  4JI1 D;  2JAN A;  4DR3 D;  1C06 A;  4AQY D;  2UUA D;  4LFA D;  3OTO D;  4B3M D;  4DV5 D;  4LF7 D;  4JI2 D;  4JI0 D;  1HNZ D;  1P9K A;  4B3S D;  1KSK A;  2UUC D;  5BR8 D;  1N33 D;  2VQF D;  5LMU D;  4DV3 D;  4JI8 D;  4JI6 D;  1H3F A;  1H3E A;  2KTL A;  4JI5 D;  1C05 A;  1J5E D;  2HHH D;  1HR0 D;  1XNQ D;  2UXB D;  1N36 D;  4JI7 D;  4YHH D;  4JV5 D;  1DM9 A;  1IBK D;  4X62 D;  4LFC D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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