The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
60
|
sequence length |
208
|
structure length |
208
|
Chain Sequence |
GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQLVIEFYSR
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Modified Uridines with C5-Methylene Substituents at the First Position of the tRNA Anticodon Stabilize U.G Wobble Pairing During Decoding.
pubmed doi rcsb |
| molecule tags |
Ribosome
|
| molecule keywords |
16S RRNA
|
| total genus |
60
|
| structure length |
208
|
| sequence length |
208
|
| ec nomenclature | |
| pdb deposition date | 2008-03-13 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| D | PF00163 | Ribosomal_S4 | Ribosomal protein S4/S9 N-terminal domain |
| D | PF01479 | S4 | S4 domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Ribosomal Protein S4 Delta 41; Chain A, domain 1 | Ribosomal Protein S4 Delta 41; Chain A, domain 1 | ||
| Alpha Beta | Roll | Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A | RNA-binding S4 domain |
#chains in the Genus database with same CATH superfamily 2KTL A; 1DM9 A; 4JI1 D; 3KBG A; 4JI4 D; 4YHH D; 4DR4 D; 4GKK D; 4NXN D; 2E5L D; 4DR1 D; 4DUZ D; 2UU9 D; 4LF8 D; 4JI0 D; 1KSV A; 1KSK A; 4JI8 D; 4AQY D; 1HNW D; 2UXC D; 1IBL D; 1IBM D; 1FJG D; 4DV7 D; 1HR0 D; 4DV3 D; 1HNX D; 4DV4 D; 4JI6 D; 4B3S D; 1I94 D; 1N34 D; 2UXB D; 1N36 D; 4B3R D; 4DV6 D; 3DH3 A; 1XMO D; 4JI7 D; 4DR6 D; 4LF5 D; 4NXM D; 4LF6 D; 1C05 A; 4DV5 D; 4LF9 D; 4YY3 D; 4DR7 D; 4LGT A; 4LF4 D; 5BR8 D; 1KSL A; 4JYA D; 4X64 D; 2ZM6 D; 5LMN D; 1JH3 A; 1N32 D; 2VQF D; 2F4V D; 4OX9 D; 4X62 D; 4JV5 D; 3HP7 A; 4KHP D; 1VIO A; 1C06 A; 4JI3 D; 4K0K D; 5LMU D; 4X66 D; 2VQE D; 1P9K A; 2JAN A; 4B3T D; 2K6P A; 4DR2 D; 1N33 D; 4DR3 D; 4GKJ D; 4OUD A; 4LFC D; 1H3F A; 4DV0 D; 4DUY D; 4DR5 D; 4JI5 D; 1IBK D; 1XNQ D; 2UUA D; 2UUC D; 2HHH D; 4DV2 D; 2IST A; 4X65 D; 2UUB D; 4LF7 D; 2UXD D; 4LFA D; 4LFB D; 1HNZ D; 4DV1 D; 5IWA D; 1J5E D; 3T1H D; 3T1Y D; 3OTO D; 1FKA D; 4JI2 D; 1XNR D; 1XMQ D; 4B3M D; 1H3E A; #chains in the Genus database with same CATH topology 2KTL A; 1DM9 A; 5IT9 E; 4JI1 D; 4II2 A; 2ZTB A; 3KYC B; 3KBG A; 4JI4 D; 4YHH D; 4DR4 D; 4GKK D; 4NXN D; 3KYD B; 2E5L D; 4DR1 D; 4DUZ D; 2UU9 D; 4LF8 D; 4JI0 D; 1KSV A; 1KSK A; 4JI8 D; 4AQY D; 1HNW D; 2UXC D; 1IBL D; 1IBM D; 1FJG D; 4DV7 D; 1HR0 D; 4DV3 D; 1HNX D; 4DV4 D; 4JI6 D; 5FQ2 B; 4B3S D; 1I94 D; 1N34 D; 2UXB D; 1N36 D; 4B3R D; 4DV6 D; 3DH3 A; 1XMO D; 5KNL A; 4JI7 D; 4DR6 D; 3J80 E; 4LF5 D; 4NXM D; 1Y8R B; 4LF6 D; 1C05 A; 4DV5 D; 4LF9 D; 4YY3 D; 4DR7 D; 4LGT A; 5A2Q E; 4NNJ A; 4LF4 D; 5BR8 D; 1KSL A; 4JYA D; 4X64 D; 2ZM6 D; 5LMN D; 1JH3 A; 3J7A F; 2I1S A; 3ONG A; 3CMM A; 1N32 D; 2VQF D; 2F4V D; 4OX9 D; 4X62 D; 4JV5 D; 3HP7 A; 4KHP D; 1VIO A; 1C06 A; 4JI3 D; 4K0K D; 5LMU D; 4X66 D; 2VQE D; 1P9K A; 2JAN A; 4B3T D; 2K6P A; 4DR2 D; 1N33 D; 4DR3 D; 4GKJ D; 4OUD A; 4LFC D; 1H3F A; 2NVU B; 4DV0 D; 3JAM E; 5LL6 S; 4DUY D; 3FN1 A; 1Y8Q B; 4DR5 D; 4JI5 D; 1IBK D; 3J81 E; 5FLX E; 1XNQ D; 2UUA D; 2UUC D; 1Y8X B; 2HHH D; 4DV2 D; 2IST A; 4X65 D; 2UUB D; 4LF7 D; 2UXD D; 4LFA D; 4LFB D; 2LQ7 A; 1HNZ D; 5IWA D; 4DV1 D; 1J5E D; 4W5V B; 2L3N A; 3T1H D; 3T1Y D; 4II3 A; 3OTO D; 1FKA D; 3ONH A; 4JI2 D; 1XNR D; 1XMQ D; 4B3M D; 1H3E A; #chains in the Genus database with same CATH homology 2KTL A; 1DM9 A; 4JI1 D; 3KBG A; 4JI4 D; 4YHH D; 4DR4 D; 4GKK D; 4NXN D; 2E5L D; 4DR1 D; 4DUZ D; 2UU9 D; 4LF8 D; 4JI0 D; 1KSV A; 1KSK A; 4JI8 D; 4AQY D; 1HNW D; 2UXC D; 1IBL D; 1IBM D; 1FJG D; 4DV7 D; 1HR0 D; 4DV3 D; 1HNX D; 4DV4 D; 4JI6 D; 4B3S D; 1I94 D; 1N34 D; 2UXB D; 1N36 D; 4B3R D; 4DV6 D; 3DH3 A; 1XMO D; 4JI7 D; 4DR6 D; 4LF5 D; 4NXM D; 4LF6 D; 1C05 A; 4DV5 D; 4LF9 D; 4YY3 D; 4DR7 D; 4LGT A; 4LF4 D; 5BR8 D; 1KSL A; 4JYA D; 4X64 D; 2ZM6 D; 5LMN D; 1JH3 A; 1N32 D; 2VQF D; 2F4V D; 4OX9 D; 4X62 D; 4JV5 D; 3HP7 A; 4KHP D; 1VIO A; 1C06 A; 4JI3 D; 4K0K D; 5LMU D; 4X66 D; 2VQE D; 1P9K A; 2JAN A; 4B3T D; 2K6P A; 4DR2 D; 1N33 D; 4DR3 D; 4GKJ D; 4OUD A; 4LFC D; 1H3F A; 4DV0 D; 4DUY D; 4DR5 D; 4JI5 D; 1IBK D; 1XNQ D; 2UUA D; 2UUC D; 2HHH D; 4DV2 D; 2IST A; 4X65 D; 2UUB D; 4LF7 D; 2UXD D; 4LFA D; 4LFB D; 1HNZ D; 5IWA D; 4DV1 D; 1J5E D; 2L3N A; 3T1H D; 3T1Y D; 3OTO D; 1FKA D; 4JI2 D; 1XNR D; 1XMQ D; 4B3M D; 1H3E A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
