3ONGA

Crystal structure of uba2ufd-ubc9: insights into e1-e2 interactions in sumo pathways
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
114
structure length
114
Chain Sequence
SKVCRGVIKLSSDCLNKMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDEEGDTMIRKAIELFLDVDDELPCNTCSLPDVEVPLIKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of UBA2(ufd)-Ubc9: insights into E1-E2 interactions in Sumo pathways.
pubmed doi rcsb
molecule tags Ligase
source organism Saccharomyces cerevisiae
molecule keywords Ubiquitin-activating enzyme E1-like
total genus 28
structure length 114
sequence length 114
chains with identical sequence C
ec nomenclature
pdb deposition date 2010-08-28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.290.20 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A Ubiquitin-like 2 activating enzyme e1b. Chain: B, domain 3 3ongA01
2NVUB 3ONGA 1Y8QB 3FN1A 3ONHA 1Y8XB 1Y8RB 2LQ7A 4W5VB 3KYDB 5FQ2B 3KYCB
chains in the Genus database with same CATH superfamily
5A2QE 1KSKA 1KSLA 4DR1D 4II3A 1HNZD 4LFBD 1IBKD 2LQ7A 3J80E 2NVUB 4LF7D 1H3FA 1Y8XB 4DV4D 2UUAD 4OX9D 5LMND 1N32D 1XNQD 2ISTA 3KBGA 4JI8D 4LF5D 3JAME 4DV3D 4X62D 4LF4D 4K0KD 4DV5D 2UXDD 3J7AF 1IBMD 3HP7A 1HNWD 2KTLA 1J5ED 4W5VB 4DR3D 4DV2D 4KHPD 3ONGA 3J81E 4JI4D 3KYDB 2F4VD 4GKJD 1XMQD 2UXCD 4X66D 1KSVA 5LL6S 4JYAD 1FKAD 1IBLD 4LFCD 5BR8D 4X64D 4DV7D 1N36D 3FN1A 2UXBD 4NXMD 4DR7D 1JH3A 3T1HD 1I94D 5IWAD 4DV0D 3ONHA 2UUBD 4LGTA 2VQED 2UU9D 1DM9A 4DR2D 4B3SD 4YY3D 4B3TD 4NNJA 4II2A 4X65D 3KYCB 3CMMA 3DH3A 1C05A 4JV5D 2I1SA 1Y8RB 4OUDA 2ZM6D 4JI3D 4DV1D 4JI2D 1N34D 2UUCD 4GKKD 5LMUD 3T1YD 2VQFD 1P9KA 4JI5D 4LF8D 3OTOD 1XNRD 4JI6D 1N33D 4DR6D 4YHHD 1C06A 2K6PA 4JI1D 1HR0D 1FJGD 2E5LD 4DV6D 2JANA 4B3MD 1VIOA 5KNLA 4DR5D 1XMOD 2ZTBA 2HHHD 4LF6D 4JI0D 4B3RD 4NXND 4LF9D 1HNXD 5FQ2B 4DUZD 5IT9E 1H3EA 1Y8QB 4AQYD 5FLXE 4DR4D 4JI7D 4LFAD 4DUYD
chains in the Genus database with same CATH topology
2NVUB 3ONGA 1Y8QB 3FN1A 3ONHA 1Y8XB 1Y8RB 2LQ7A 4W5VB 3KYDB 5FQ2B 3KYCB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NVU B;  3ONG A;  1Y8Q B;  3FN1 A;  3ONH A;  1Y8X B;  1Y8R B;  2LQ7 A;  4W5V B;  3KYD B;  5FQ2 B;  3KYC B; 
#chains in the Genus database with same CATH topology
 5A2Q E;  1KSK A;  1KSL A;  4DR1 D;  4II3 A;  1HNZ D;  4LFB D;  1IBK D;  2LQ7 A;  3J80 E;  2NVU B;  4LF7 D;  1H3F A;  1Y8X B;  4DV4 D;  2UUA D;  4OX9 D;  5LMN D;  1N32 D;  1XNQ D;  2IST A;  3KBG A;  4JI8 D;  4LF5 D;  3JAM E;  4DV3 D;  4X62 D;  4LF4 D;  4K0K D;  4DV5 D;  2UXD D;  3J7A F;  1IBM D;  3HP7 A;  1HNW D;  2KTL A;  1J5E D;  4W5V B;  4DR3 D;  4DV2 D;  4KHP D;  3ONG A;  3J81 E;  4JI4 D;  3KYD B;  2F4V D;  4GKJ D;  1XMQ D;  2UXC D;  4X66 D;  1KSV A;  5LL6 S;  4JYA D;  1FKA D;  1IBL D;  4LFC D;  5BR8 D;  4X64 D;  4DV7 D;  1N36 D;  3FN1 A;  2UXB D;  4NXM D;  4DR7 D;  1JH3 A;  3T1H D;  1I94 D;  5IWA D;  4DV0 D;  3ONH A;  2UUB D;  4LGT A;  2VQE D;  2UU9 D;  1DM9 A;  4DR2 D;  4B3S D;  4YY3 D;  4B3T D;  4NNJ A;  4II2 A;  4X65 D;  3KYC B;  3CMM A;  3DH3 A;  1C05 A;  4JV5 D;  2I1S A;  1Y8R B;  4OUD A;  2ZM6 D;  4JI3 D;  4DV1 D;  4JI2 D;  1N34 D;  2UUC D;  4GKK D;  5LMU D;  3T1Y D;  2VQF D;  1P9K A;  4JI5 D;  4LF8 D;  3OTO D;  1XNR D;  4JI6 D;  1N33 D;  4DR6 D;  4YHH D;  1C06 A;  2K6P A;  4JI1 D;  1HR0 D;  1FJG D;  2E5L D;  4DV6 D;  2JAN A;  4B3M D;  1VIO A;  5KNL A;  4DR5 D;  1XMO D;  2ZTB A;  2HHH D;  4LF6 D;  4JI0 D;  4B3R D;  4NXN D;  4LF9 D;  1HNX D;  5FQ2 B;  4DUZ D;  5IT9 E;  1H3E A;  1Y8Q B;  4AQY D;  5FLX E;  4DR4 D;  4JI7 D;  4LFA D;  4DUY D; 
#chains in the Genus database with same CATH homology
 2NVU B;  3ONG A;  1Y8Q B;  3FN1 A;  3ONH A;  1Y8X B;  1Y8R B;  2LQ7 A;  4W5V B;  3KYD B;  5FQ2 B;  3KYC B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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