1JH3A

Solution structure of tyrosyl-trna synthetase c-terminal domain.
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
99
structure length
99
Chain Sequence
ALFSGDIANLTAAEIEQGFKDVPSFVHEGGDVPLVELLVSAGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEHRLEGRFTVIRRGKKKYYLIRYA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Ligase
molecule keywords TYROSYL-TRNA SYNTHETASE
publication title Structure and Dynamics of the Anticodon Arm Binding Domain of Bacillus stearothermophilus Tyrosyl-tRNA Synthetase
pubmed doi rcsb
source organism Geobacillus stearothermophilus
total genus 22
structure length 99
sequence length 99
ec nomenclature ec 6.1.1.1: Tyrosine--tRNA ligase.
pdb deposition date 2001-06-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01479 S4 S4 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.290.10 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A RNA-binding S4 domain 1jh3A00
2UUBD 4NXND 4JI2D 2HHHD 4JI1D 5LMND 4OX9D 4DV7D 1HR0D 4DR4D 1XMQD 4DV2D 5LMUD 4K0KD 4JI8D 1FKAD 4LF9D 1C05A 4JV5D 1KSLA 4OUDA 4JI0D 4NXMD 4LFBD 1J5ED 5BR8D 1VIOA 4DR1D 2UXDD 2E5LD 4LF6D 2UUAD 1KSKA 2UXCD 2K6PA 4GKKD 4JYAD 4B3MD 4DR6D 4LF7D 3HP7A 1HNZD 4DV4D 4DV5D 4DR3D 4LFAD 4YY3D 4DR7D 4DV3D 1C06A 4B3SD 4B3TD 4DV6D 3DH3A 4JI3D 4JI4D 4B3RD 1DM9A 1XNQD 4DUZD 1HNXD 4KHPD 3T1HD 2VQFD 4LF5D 1HNWD 2KTLA 4DUYD 4YHHD 4LFCD 4JI6D 4JI7D 1XMOD 1IBLD 1XNRD 4GKJD 4JI5D 4DV0D 1H3FA 1KSVA 2JANA 1I94D 2ISTA 5IWAD 4AQYD 4DR5D 1N36D 2VQED 4X65D 2UU9D 1FJGD 2UUCD 3T1YD 2F4VD 1IBMD 1IBKD 1H3EA 1JH3A 4DV1D 3KBGA 4X64D 4LF4D 4DR2D 4LGTA 1N34D 3OTOD 4X62D 1P9KA 4LF8D 2ZM6D 1N33D 4X66D 1N32D 2UXBD
chains in the Genus database with same CATH superfamily
2UUBD 5FQ2B 4NXND 4JI2D 2HHHD 4JI1D 3KYDB 5LMND 4OX9D 4DV7D 1HR0D 4DR4D 4NNJA 1XMQD 4DV2D 5LMUD 4K0KD 4JI8D 1FKAD 4LF9D 1C05A 4JV5D 1KSLA 4OUDA 4JI0D 3CMMA 4NXMD 4LFBD 1Y8XB 1J5ED 5BR8D 1VIOA 4DR1D 2UXDD 1Y8RB 2E5LD 4LF6D 2UUAD 1KSKA 5IT9E 2UXCD 2K6PA 4GKKD 4JYAD 4B3MD 4DR6D 4LF7D 3HP7A 3JAME 1HNZD 4DV4D 4DV5D 4DR3D 4LFAD 4II3A 4YY3D 2LQ7A 4DR7D 4W5VB 4DV3D 5A2QE 1C06A 4B3SD 4B3TD 4DV6D 3DH3A 4JI3D 4JI4D 4B3RD 1DM9A 3FN1A 1XNQD 4DUZD 1HNXD 4KHPD 5FLXE 3T1HD 2VQFD 4LF5D 3J7AF 1HNWD 2KTLA 1Y8QB 4DUYD 4YHHD 4II2A 3ONHA 4LFCD 4JI6D 5LL6S 4JI7D 1XMOD 1IBLD 5KNLA 1XNRD 3KYCB 4GKJD 4JI5D 4DV0D 1H3FA 1KSVA 2JANA 1I94D 2ISTA 5IWAD 2NVUB 4AQYD 4DR5D 1N36D 2VQED 4X65D 2UU9D 3J80E 1FJGD 2UUCD 3T1YD 2F4VD 2ZTBA 1IBMD 1IBKD 2I1SA 1H3EA 1JH3A 4DV1D 3KBGA 4X64D 4LF4D 4DR2D 4LGTA 3ONGA 1N34D 3J81E 4X62D 3OTOD 1P9KA 4LF8D 2ZM6D 1N33D 4X66D 1N32D 2UXBD
chains in the Genus database with same CATH topology
2UUBD 4NXND 4JI2D 2HHHD 4JI1D 5LMND 4OX9D 4DV7D 1HR0D 4DR4D 1XMQD 4DV2D 5LMUD 4K0KD 4JI8D 1FKAD 4LF9D 1C05A 4JV5D 1KSLA 4OUDA 4JI0D 4NXMD 4LFBD 1J5ED 5BR8D 1VIOA 4DR1D 2UXDD 2E5LD 4LF6D 2UUAD 1KSKA 2UXCD 2K6PA 4GKKD 4JYAD 4B3MD 4DR6D 4LF7D 3HP7A 1HNZD 4DV4D 4DV5D 4DR3D 4LFAD 4YY3D 4DR7D 4DV3D 1C06A 4B3SD 4B3TD 4DV6D 3DH3A 4JI3D 4JI4D 4B3RD 1DM9A 1XNQD 4DUZD 1HNXD 4KHPD 3T1HD 2VQFD 4LF5D 1HNWD 2KTLA 4DUYD 4YHHD 4LFCD 4JI6D 4JI7D 1XMOD 1IBLD 1XNRD 4GKJD 4JI5D 4DV0D 1H3FA 1KSVA 2JANA 1I94D 2ISTA 5IWAD 4AQYD 4DR5D 1N36D 2VQED 4X65D 2UU9D 1FJGD 2UUCD 3T1YD 2F4VD 1IBMD 1IBKD 1H3EA 1JH3A 4DV1D 3KBGA 4X64D 4LF4D 4DR2D 4LGTA 1N34D 3OTOD 4X62D 1P9KA 4LF8D 2ZM6D 1N33D 4X66D 1N32D 2UXBD
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2UUB D;  4NXN D;  4JI2 D;  2HHH D;  4JI1 D;  5LMN D;  4OX9 D;  4DV7 D;  1HR0 D;  4DR4 D;  1XMQ D;  4DV2 D;  5LMU D;  4K0K D;  4JI8 D;  1FKA D;  4LF9 D;  1C05 A;  4JV5 D;  1KSL A;  4OUD A;  4JI0 D;  4NXM D;  4LFB D;  1J5E D;  5BR8 D;  1VIO A;  4DR1 D;  2UXD D;  2E5L D;  4LF6 D;  2UUA D;  1KSK A;  2UXC D;  2K6P A;  4GKK D;  4JYA D;  4B3M D;  4DR6 D;  4LF7 D;  3HP7 A;  1HNZ D;  4DV4 D;  4DV5 D;  4DR3 D;  4LFA D;  4YY3 D;  4DR7 D;  4DV3 D;  1C06 A;  4B3S D;  4B3T D;  4DV6 D;  3DH3 A;  4JI3 D;  4JI4 D;  4B3R D;  1DM9 A;  1XNQ D;  4DUZ D;  1HNX D;  4KHP D;  3T1H D;  2VQF D;  4LF5 D;  1HNW D;  2KTL A;  4DUY D;  4YHH D;  4LFC D;  4JI6 D;  4JI7 D;  1XMO D;  1IBL D;  1XNR D;  4GKJ D;  4JI5 D;  4DV0 D;  1H3F A;  1KSV A;  2JAN A;  1I94 D;  2IST A;  5IWA D;  4AQY D;  4DR5 D;  1N36 D;  2VQE D;  4X65 D;  2UU9 D;  1FJG D;  2UUC D;  3T1Y D;  2F4V D;  1IBM D;  1IBK D;  1H3E A;  1JH3 A;  4DV1 D;  3KBG A;  4X64 D;  4LF4 D;  4DR2 D;  4LGT A;  1N34 D;  3OTO D;  4X62 D;  1P9K A;  4LF8 D;  2ZM6 D;  1N33 D;  4X66 D;  1N32 D;  2UXB D; 
#chains in the Genus database with same CATH topology
 2UUB D;  5FQ2 B;  4NXN D;  4JI2 D;  2HHH D;  4JI1 D;  3KYD B;  5LMN D;  4OX9 D;  4DV7 D;  1HR0 D;  4DR4 D;  4NNJ A;  1XMQ D;  4DV2 D;  5LMU D;  4K0K D;  4JI8 D;  1FKA D;  4LF9 D;  1C05 A;  4JV5 D;  1KSL A;  4OUD A;  4JI0 D;  3CMM A;  4NXM D;  4LFB D;  1Y8X B;  1J5E D;  5BR8 D;  1VIO A;  4DR1 D;  2UXD D;  1Y8R B;  2E5L D;  4LF6 D;  2UUA D;  1KSK A;  5IT9 E;  2UXC D;  2K6P A;  4GKK D;  4JYA D;  4B3M D;  4DR6 D;  4LF7 D;  3HP7 A;  3JAM E;  1HNZ D;  4DV4 D;  4DV5 D;  4DR3 D;  4LFA D;  4II3 A;  4YY3 D;  2LQ7 A;  4DR7 D;  4W5V B;  4DV3 D;  5A2Q E;  1C06 A;  4B3S D;  4B3T D;  4DV6 D;  3DH3 A;  4JI3 D;  4JI4 D;  4B3R D;  1DM9 A;  3FN1 A;  1XNQ D;  4DUZ D;  1HNX D;  4KHP D;  5FLX E;  3T1H D;  2VQF D;  4LF5 D;  3J7A F;  1HNW D;  2KTL A;  1Y8Q B;  4DUY D;  4YHH D;  4II2 A;  3ONH A;  4LFC D;  4JI6 D;  5LL6 S;  4JI7 D;  1XMO D;  1IBL D;  5KNL A;  1XNR D;  3KYC B;  4GKJ D;  4JI5 D;  4DV0 D;  1H3F A;  1KSV A;  2JAN A;  1I94 D;  2IST A;  5IWA D;  2NVU B;  4AQY D;  4DR5 D;  1N36 D;  2VQE D;  4X65 D;  2UU9 D;  3J80 E;  1FJG D;  2UUC D;  3T1Y D;  2F4V D;  2ZTB A;  1IBM D;  1IBK D;  2I1S A;  1H3E A;  1JH3 A;  4DV1 D;  3KBG A;  4X64 D;  4LF4 D;  4DR2 D;  4LGT A;  3ONG A;  1N34 D;  3J81 E;  4X62 D;  3OTO D;  1P9K A;  4LF8 D;  2ZM6 D;  1N33 D;  4X66 D;  1N32 D;  2UXB D; 
#chains in the Genus database with same CATH homology
 2UUB D;  4NXN D;  4JI2 D;  2HHH D;  4JI1 D;  5LMN D;  4OX9 D;  4DV7 D;  1HR0 D;  4DR4 D;  1XMQ D;  4DV2 D;  5LMU D;  4K0K D;  4JI8 D;  1FKA D;  4LF9 D;  1C05 A;  4JV5 D;  1KSL A;  4OUD A;  4JI0 D;  4NXM D;  4LFB D;  1J5E D;  5BR8 D;  1VIO A;  4DR1 D;  2UXD D;  2E5L D;  4LF6 D;  2UUA D;  1KSK A;  2UXC D;  2K6P A;  4GKK D;  4JYA D;  4B3M D;  4DR6 D;  4LF7 D;  3HP7 A;  1HNZ D;  4DV4 D;  4DV5 D;  4DR3 D;  4LFA D;  4YY3 D;  4DR7 D;  4DV3 D;  1C06 A;  4B3S D;  4B3T D;  4DV6 D;  3DH3 A;  4JI3 D;  4JI4 D;  4B3R D;  1DM9 A;  1XNQ D;  4DUZ D;  1HNX D;  4KHP D;  3T1H D;  2VQF D;  4LF5 D;  1HNW D;  2KTL A;  4DUY D;  4YHH D;  4LFC D;  4JI6 D;  4JI7 D;  1XMO D;  1IBL D;  1XNR D;  4GKJ D;  4JI5 D;  4DV0 D;  1H3F A;  1KSV A;  2JAN A;  1I94 D;  2IST A;  5IWA D;  4AQY D;  4DR5 D;  1N36 D;  2VQE D;  4X65 D;  2UU9 D;  1FJG D;  2UUC D;  3T1Y D;  2F4V D;  1IBM D;  1IBK D;  1H3E A;  1JH3 A;  4DV1 D;  3KBG A;  4X64 D;  4LF4 D;  4DR2 D;  4LGT A;  1N34 D;  3OTO D;  4X62 D;  1P9K A;  4LF8 D;  2ZM6 D;  1N33 D;  4X66 D;  1N32 D;  2UXB D;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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