1JH3A

Solution structure of tyrosyl-trna synthetase c-terminal domain.
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
99
structure length
99
Chain Sequence
ALFSGDIANLTAAEIEQGFKDVPSFVHEGGDVPLVELLVSAGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEHRLEGRFTVIRRGKKKYYLIRYA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure and Dynamics of the Anticodon Arm Binding Domain of Bacillus stearothermophilus Tyrosyl-tRNA Synthetase
pubmed doi rcsb
molecule tags Ligase
source organism Geobacillus stearothermophilus
molecule keywords TYROSYL-TRNA SYNTHETASE
total genus 22
structure length 99
sequence length 99
ec nomenclature ec 6.1.1.1: Tyrosine--tRNA ligase.
pdb deposition date 2001-06-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01479 S4 S4 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.290.10 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A RNA-binding S4 domain 1jh3A00
1C06A 1KSKA 1KSLA 1C05A 4DV2D 4JYAD 4DV3D 4JI2D 1HNXD 4DV7D 2UXBD 4JI1D 1N36D 1FKAD 1XNRD 5LMUD 3OTOD 4KHPD 1DM9A 5LMND 1HNZD 4LFAD 1IBMD 1H3EA 4YHHD 4AQYD 4B3SD 4LGTA 4NXND 1HR0D 1FJGD 4DV0D 4DV1D 4DR2D 3KBGA 4DR6D 4B3MD 1J5ED 1N34D 4LF6D 4DR1D 4LFCD 1XNQD 4JI7D 1VIOA 4DV6D 4NXMD 4LFBD 2UUBD 4DV4D 4JV5D 1H3FA 4DV5D 1XMQD 4JI4D 1P9KA 4X62D 4JI0D 2UU9D 4K0KD 1KSVA 4X65D 4YY3D 4JI3D 4B3RD 2ISTA 1I94D 2K6PA 5BR8D 2UXCD 2JANA 2HHHD 4DR4D 1IBKD 4X64D 4DR3D 2UUCD 4LF7D 4DUYD 1JH3A 4LF8D 4DUZD 4OUDA 1N32D 2VQED 3T1YD 2VQFD 1IBLD 1XMOD 5IWAD 4JI5D 1N33D 2KTLA 4LF5D 2E5LD 4JI8D 4DR7D 2ZM6D 4JI6D 4LF9D 4OX9D 3DH3A 2F4VD 1HNWD 4X66D 3T1HD 4LF4D 4GKJD 4B3TD 2UUAD 4GKKD 3HP7A 2UXDD 4DR5D
chains in the Genus database with same CATH superfamily
1C06A 1KSKA 1KSLA 2I1SA 2LQ7A 1C05A 4DV2D 5FLXE 3ONHA 4JYAD 4DV3D 4JI2D 1HNXD 4DV7D 5FQ2B 2UXBD 4NNJA 4JI1D 1N36D 1FKAD 1XNRD 5LMUD 3OTOD 4KHPD 1DM9A 5LMND 1HNZD 4LFAD 1IBMD 1H3EA 3J7AF 4W5VB 4YHHD 4AQYD 4B3SD 4LGTA 5IT9E 3JAME 4NXND 1HR0D 1FJGD 4DV0D 3ONGA 3FN1A 4DV1D 4DR2D 3KBGA 4DR6D 5KNLA 4B3MD 1J5ED 1N34D 4LF6D 4DR1D 4LFCD 5A2QE 1XNQD 4JI7D 4II2A 1VIOA 3KYCB 4DV6D 5LL6S 4NXMD 4LFBD 2UUBD 4DV4D 4JV5D 1H3FA 4DV5D 1XMQD 4JI4D 1P9KA 4X62D 4JI0D 2UU9D 4K0KD 3J81E 1KSVA 4X65D 4YY3D 3KYDB 4JI3D 4B3RD 2ISTA 1I94D 4II3A 2K6PA 5BR8D 2UXCD 2JANA 2HHHD 3CMMA 4DR4D 1IBKD 4X64D 4DR3D 2UUCD 1Y8RB 4LF7D 4DUYD 1JH3A 4LF8D 1Y8XB 4DUZD 4OUDA 1N32D 1Y8QB 2VQED 3T1YD 2VQFD 1IBLD 1XMOD 5IWAD 4JI5D 1N33D 2NVUB 2KTLA 4LF5D 2E5LD 4JI8D 4DR7D 3J80E 2ZM6D 4JI6D 4LF9D 4OX9D 2ZTBA 3DH3A 2F4VD 1HNWD 4X66D 3T1HD 4LF4D 4GKJD 4B3TD 2UUAD 4GKKD 3HP7A 2UXDD 4DR5D
chains in the Genus database with same CATH topology
1C06A 1KSKA 1KSLA 1C05A 4DV2D 4JYAD 4DV3D 4JI2D 1HNXD 4DV7D 2UXBD 4JI1D 1N36D 1FKAD 1XNRD 5LMUD 3OTOD 4KHPD 1DM9A 5LMND 1HNZD 4LFAD 1IBMD 1H3EA 4YHHD 4AQYD 4B3SD 4LGTA 4NXND 1HR0D 1FJGD 4DV0D 4DV1D 4DR2D 3KBGA 4DR6D 4B3MD 1J5ED 1N34D 4LF6D 4DR1D 4LFCD 1XNQD 4JI7D 1VIOA 4DV6D 4NXMD 4LFBD 2UUBD 4DV4D 4JV5D 1H3FA 4DV5D 1XMQD 4JI4D 1P9KA 4X62D 4JI0D 2UU9D 4K0KD 1KSVA 4X65D 4YY3D 4JI3D 4B3RD 2ISTA 1I94D 2K6PA 5BR8D 2UXCD 2JANA 2HHHD 4DR4D 1IBKD 4X64D 4DR3D 2UUCD 4LF7D 4DUYD 1JH3A 4LF8D 4DUZD 4OUDA 1N32D 2VQED 3T1YD 2VQFD 1IBLD 1XMOD 5IWAD 4JI5D 1N33D 2KTLA 4LF5D 2E5LD 4JI8D 4DR7D 2ZM6D 4JI6D 4LF9D 4OX9D 3DH3A 2F4VD 1HNWD 4X66D 3T1HD 4LF4D 4GKJD 4B3TD 2UUAD 4GKKD 3HP7A 2UXDD 4DR5D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1C06 A;  1KSK A;  1KSL A;  1C05 A;  4DV2 D;  4JYA D;  4DV3 D;  4JI2 D;  1HNX D;  4DV7 D;  2UXB D;  4JI1 D;  1N36 D;  1FKA D;  1XNR D;  5LMU D;  3OTO D;  4KHP D;  1DM9 A;  5LMN D;  1HNZ D;  4LFA D;  1IBM D;  1H3E A;  4YHH D;  4AQY D;  4B3S D;  4LGT A;  4NXN D;  1HR0 D;  1FJG D;  4DV0 D;  4DV1 D;  4DR2 D;  3KBG A;  4DR6 D;  4B3M D;  1J5E D;  1N34 D;  4LF6 D;  4DR1 D;  4LFC D;  1XNQ D;  4JI7 D;  1VIO A;  4DV6 D;  4NXM D;  4LFB D;  2UUB D;  4DV4 D;  4JV5 D;  1H3F A;  4DV5 D;  1XMQ D;  4JI4 D;  1P9K A;  4X62 D;  4JI0 D;  2UU9 D;  4K0K D;  1KSV A;  4X65 D;  4YY3 D;  4JI3 D;  4B3R D;  2IST A;  1I94 D;  2K6P A;  5BR8 D;  2UXC D;  2JAN A;  2HHH D;  4DR4 D;  1IBK D;  4X64 D;  4DR3 D;  2UUC D;  4LF7 D;  4DUY D;  1JH3 A;  4LF8 D;  4DUZ D;  4OUD A;  1N32 D;  2VQE D;  3T1Y D;  2VQF D;  1IBL D;  1XMO D;  5IWA D;  4JI5 D;  1N33 D;  2KTL A;  4LF5 D;  2E5L D;  4JI8 D;  4DR7 D;  2ZM6 D;  4JI6 D;  4LF9 D;  4OX9 D;  3DH3 A;  2F4V D;  1HNW D;  4X66 D;  3T1H D;  4LF4 D;  4GKJ D;  4B3T D;  2UUA D;  4GKK D;  3HP7 A;  2UXD D;  4DR5 D; 
#chains in the Genus database with same CATH topology
 1C06 A;  1KSK A;  1KSL A;  2I1S A;  2LQ7 A;  1C05 A;  4DV2 D;  5FLX E;  3ONH A;  4JYA D;  4DV3 D;  4JI2 D;  1HNX D;  4DV7 D;  5FQ2 B;  2UXB D;  4NNJ A;  4JI1 D;  1N36 D;  1FKA D;  1XNR D;  5LMU D;  3OTO D;  4KHP D;  1DM9 A;  5LMN D;  1HNZ D;  4LFA D;  1IBM D;  1H3E A;  3J7A F;  4W5V B;  4YHH D;  4AQY D;  4B3S D;  4LGT A;  5IT9 E;  3JAM E;  4NXN D;  1HR0 D;  1FJG D;  4DV0 D;  3ONG A;  3FN1 A;  4DV1 D;  4DR2 D;  3KBG A;  4DR6 D;  5KNL A;  4B3M D;  1J5E D;  1N34 D;  4LF6 D;  4DR1 D;  4LFC D;  5A2Q E;  1XNQ D;  4JI7 D;  4II2 A;  1VIO A;  3KYC B;  4DV6 D;  5LL6 S;  4NXM D;  4LFB D;  2UUB D;  4DV4 D;  4JV5 D;  1H3F A;  4DV5 D;  1XMQ D;  4JI4 D;  1P9K A;  4X62 D;  4JI0 D;  2UU9 D;  4K0K D;  3J81 E;  1KSV A;  4X65 D;  4YY3 D;  3KYD B;  4JI3 D;  4B3R D;  2IST A;  1I94 D;  4II3 A;  2K6P A;  5BR8 D;  2UXC D;  2JAN A;  2HHH D;  3CMM A;  4DR4 D;  1IBK D;  4X64 D;  4DR3 D;  2UUC D;  1Y8R B;  4LF7 D;  4DUY D;  1JH3 A;  4LF8 D;  1Y8X B;  4DUZ D;  4OUD A;  1N32 D;  1Y8Q B;  2VQE D;  3T1Y D;  2VQF D;  1IBL D;  1XMO D;  5IWA D;  4JI5 D;  1N33 D;  2NVU B;  2KTL A;  4LF5 D;  2E5L D;  4JI8 D;  4DR7 D;  3J80 E;  2ZM6 D;  4JI6 D;  4LF9 D;  4OX9 D;  2ZTB A;  3DH3 A;  2F4V D;  1HNW D;  4X66 D;  3T1H D;  4LF4 D;  4GKJ D;  4B3T D;  2UUA D;  4GKK D;  3HP7 A;  2UXD D;  4DR5 D; 
#chains in the Genus database with same CATH homology
 1C06 A;  1KSK A;  1KSL A;  1C05 A;  4DV2 D;  4JYA D;  4DV3 D;  4JI2 D;  1HNX D;  4DV7 D;  2UXB D;  4JI1 D;  1N36 D;  1FKA D;  1XNR D;  5LMU D;  3OTO D;  4KHP D;  1DM9 A;  5LMN D;  1HNZ D;  4LFA D;  1IBM D;  1H3E A;  4YHH D;  4AQY D;  4B3S D;  4LGT A;  4NXN D;  1HR0 D;  1FJG D;  4DV0 D;  4DV1 D;  4DR2 D;  3KBG A;  4DR6 D;  4B3M D;  1J5E D;  1N34 D;  4LF6 D;  4DR1 D;  4LFC D;  1XNQ D;  4JI7 D;  1VIO A;  4DV6 D;  4NXM D;  4LFB D;  2UUB D;  4DV4 D;  4JV5 D;  1H3F A;  4DV5 D;  1XMQ D;  4JI4 D;  1P9K A;  4X62 D;  4JI0 D;  2UU9 D;  4K0K D;  1KSV A;  4X65 D;  4YY3 D;  4JI3 D;  4B3R D;  2IST A;  1I94 D;  2K6P A;  5BR8 D;  2UXC D;  2JAN A;  2HHH D;  4DR4 D;  1IBK D;  4X64 D;  4DR3 D;  2UUC D;  4LF7 D;  4DUY D;  1JH3 A;  4LF8 D;  4DUZ D;  4OUD A;  1N32 D;  2VQE D;  3T1Y D;  2VQF D;  1IBL D;  1XMO D;  5IWA D;  4JI5 D;  1N33 D;  2KTL A;  4LF5 D;  2E5L D;  4JI8 D;  4DR7 D;  2ZM6 D;  4JI6 D;  4LF9 D;  4OX9 D;  3DH3 A;  2F4V D;  1HNW D;  4X66 D;  3T1H D;  4LF4 D;  4GKJ D;  4B3T D;  2UUA D;  4GKK D;  3HP7 A;  2UXD D;  4DR5 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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