1HNW | Genus

Total Genus 60

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	60
sequence length	208
structure length	208
Chain Sequence	GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQLVIEFYSR

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ribosome
publication title	The structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit. pubmed doi rcsb
molecule keywords	16S RIBOSOMAL RNA
total genus	60
structure length	208
sequence length	208
ec nomenclature
pdb deposition date	2000-12-08

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
D	PF00163	Ribosomal_S4	Ribosomal protein S4/S9 N-terminal domain
D	PF01479	S4	S4 domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1050.10	Mainly Alpha	Orthogonal Bundle	Ribosomal Protein S4 Delta 41; Chain A, domain 1	Ribosomal Protein S4 Delta 41; Chain A, domain 1	1hnwD01
3.10.290.10	Alpha Beta	Roll	Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A	RNA-binding S4 domain	1hnwD02

4X66D 1IBKD 4DV1D 4LFAD 4GKKD 2UU9D 4DV7D 1N32D 4LF7D 4LF8D 1N34D 1FKAD 2UXDD 3T1HD 1IBLD 4DR1D 2UUBD 4YHHD 4X62D 4JI1D 1DM9A 4JI5D 1I94D 1HNZD 3DH3A 4DR6D 4KHPD 2ISTA 5LMUD 4LGTA 1FJGD 4B3SD 2VQFD 5BR8D 1HNXD 4OUDA 4B3MD 4DV2D 4DR5D 5IWAD 1N33D 4JI0D 1JH3A 4DR3D 2K6PA 2KTLA 4DV5D 4NXMD 4X65D 4DV6D 2E5LD 1KSVA 1HR0D 4OX9D 2VQED 4DR2D 4DUZD 4K0KD 1VIOA 1HNWD 3KBGA 4LFBD 4JYAD 2JANA 4JI4D 2UXCD 4JV5D 3HP7A 4LF5D 2HHHD 4DR4D 2ZM6D 3T1YD 5LMND 4LF9D 4DV3D 4DV4D 1P9KA 1XMOD 4JI8D 1IBMD 4NXND 2UXBD 1XMQD 4DUYD 1J5ED 4DR7D 4YY3D 4LFCD 1XNRD 4AQYD 1KSLA 4B3TD 1H3EA 4JI6D 1C06A 1XNQD 1KSKA 1H3FA 4B3RD 1C05A 4GKJD 4LF4D 4X64D 3OTOD 4JI7D 4LF6D 1N36D 2UUAD 4DV0D 2UUCD 4JI2D 4JI3D 2F4VD
chains in the Genus database with same CATH superfamily

4X66D 1IBKD 4DV1D 4LFAD 4GKKD 5IT9E 2UU9D 2I1SA 3JAME 4DV7D 1N32D 4LF7D 5LL6S 4LF8D 1N34D 5FQ2B 1FKAD 2UXDD 3T1HD 1IBLD 4DR1D 2UUBD 4YHHD 3CMMA 4X62D 4II2A 2NVUB 4JI1D 1DM9A 4JI5D 1I94D 1HNZD 3DH3A 4DR6D 4KHPD 2ISTA 5LMUD 2ZTBA 5FLXE 4LGTA 1FJGD 4B3SD 2VQFD 2LQ7A 5BR8D 1HNXD 4OUDA 3FN1A 4B3MD 4DV2D 4DR5D 5IWAD 1N33D 4JI0D 1JH3A 4DR3D 2K6PA 2KTLA 4DV5D 4NXMD 3KYDB 4X65D 4DV6D 4II3A 2E5LD 3J81E 1KSVA 1HR0D 4OX9D 2VQED 4DR2D 4DUZD 4K0KD 1VIOA 1HNWD 3KBGA 5KNLA 4LFBD 1Y8RB 4JYAD 2JANA 3J7AF 4JI4D 2UXCD 4JV5D 3J80E 3HP7A 4LF5D 2HHHD 4DR4D 5A2QE 2ZM6D 3T1YD 4W5VB 1Y8XB 3ONHA 5LMND 4LF9D 4DV3D 4DV4D 1P9KA 1XMOD 4JI8D 1IBMD 4NXND 3KYCB 2UXBD 1Y8QB 2L3NA 1XMQD 4DUYD 1J5ED 4DR7D 3ONGA 4YY3D 4LFCD 1XNRD 4AQYD 1KSLA 4B3TD 1H3EA 4JI6D 1C06A 1XNQD 1KSKA 1H3FA 4B3RD 1C05A 4GKJD 4LF4D 4X64D 3OTOD 4JI7D 4LF6D 1N36D 2UUAD 4NNJA 4DV0D 2UUCD 4JI2D 4JI3D 2F4VD
chains in the Genus database with same CATH topology

4X66D 1IBKD 4DV1D 4LFAD 4GKKD 2UU9D 4DV7D 1N32D 4LF7D 4LF8D 1N34D 1FKAD 2UXDD 3T1HD 1IBLD 4DR1D 2UUBD 4YHHD 4X62D 4JI1D 1DM9A 4JI5D 1I94D 1HNZD 3DH3A 4DR6D 4KHPD 2ISTA 5LMUD 4LGTA 1FJGD 4B3SD 2VQFD 5BR8D 1HNXD 4OUDA 4B3MD 4DV2D 4DR5D 5IWAD 1N33D 4JI0D 1JH3A 4DR3D 2K6PA 2KTLA 4DV5D 4NXMD 4X65D 4DV6D 2E5LD 1KSVA 1HR0D 4OX9D 2VQED 4DR2D 4DUZD 4K0KD 1VIOA 1HNWD 3KBGA 4LFBD 4JYAD 2JANA 4JI4D 2UXCD 4JV5D 3HP7A 4LF5D 2HHHD 4DR4D 2ZM6D 3T1YD 5LMND 4LF9D 4DV3D 4DV4D 1P9KA 1XMOD 4JI8D 1IBMD 4NXND 2UXBD 2L3NA 1XMQD 4DUYD 1J5ED 4DR7D 4YY3D 4LFCD 1XNRD 4AQYD 1KSLA 4B3TD 1H3EA 4JI6D 1C06A 1XNQD 1KSKA 1H3FA 4B3RD 1C05A 4GKJD 4LF4D 4X64D 3OTOD 4JI7D 4LF6D 1N36D 2UUAD 4DV0D 2UUCD 4JI2D 4JI3D 2F4VD
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4X66 D;  1IBK D;  4DV1 D;  4LFA D;  4GKK D;  2UU9 D;  4DV7 D;  1N32 D;  4LF7 D;  4LF8 D;  1N34 D;  1FKA D;  2UXD D;  3T1H D;  1IBL D;  4DR1 D;  2UUB D;  4YHH D;  4X62 D;  4JI1 D;  1DM9 A;  4JI5 D;  1I94 D;  1HNZ D;  3DH3 A;  4DR6 D;  4KHP D;  2IST A;  5LMU D;  4LGT A;  1FJG D;  4B3S D;  2VQF D;  5BR8 D;  1HNX D;  4OUD A;  4B3M D;  4DV2 D;  4DR5 D;  5IWA D;  1N33 D;  4JI0 D;  1JH3 A;  4DR3 D;  2K6P A;  2KTL A;  4DV5 D;  4NXM D;  4X65 D;  4DV6 D;  2E5L D;  1KSV A;  1HR0 D;  4OX9 D;  2VQE D;  4DR2 D;  4DUZ D;  4K0K D;  1VIO A;  1HNW D;  3KBG A;  4LFB D;  4JYA D;  2JAN A;  4JI4 D;  2UXC D;  4JV5 D;  3HP7 A;  4LF5 D;  2HHH D;  4DR4 D;  2ZM6 D;  3T1Y D;  5LMN D;  4LF9 D;  4DV3 D;  4DV4 D;  1P9K A;  1XMO D;  4JI8 D;  1IBM D;  4NXN D;  2UXB D;  1XMQ D;  4DUY D;  1J5E D;  4DR7 D;  4YY3 D;  4LFC D;  1XNR D;  4AQY D;  1KSL A;  4B3T D;  1H3E A;  4JI6 D;  1C06 A;  1XNQ D;  1KSK A;  1H3F A;  4B3R D;  1C05 A;  4GKJ D;  4LF4 D;  4X64 D;  3OTO D;  4JI7 D;  4LF6 D;  1N36 D;  2UUA D;  4DV0 D;  2UUC D;  4JI2 D;  4JI3 D;  2F4V D; 
#chains in the Genus database with same CATH topology
 4X66 D;  1IBK D;  4DV1 D;  4LFA D;  4GKK D;  5IT9 E;  2UU9 D;  2I1S A;  3JAM E;  4DV7 D;  1N32 D;  4LF7 D;  5LL6 S;  4LF8 D;  1N34 D;  5FQ2 B;  1FKA D;  2UXD D;  3T1H D;  1IBL D;  4DR1 D;  2UUB D;  4YHH D;  3CMM A;  4X62 D;  4II2 A;  2NVU B;  4JI1 D;  1DM9 A;  4JI5 D;  1I94 D;  1HNZ D;  3DH3 A;  4DR6 D;  4KHP D;  2IST A;  5LMU D;  2ZTB A;  5FLX E;  4LGT A;  1FJG D;  4B3S D;  2VQF D;  2LQ7 A;  5BR8 D;  1HNX D;  4OUD A;  3FN1 A;  4B3M D;  4DV2 D;  4DR5 D;  5IWA D;  1N33 D;  4JI0 D;  1JH3 A;  4DR3 D;  2K6P A;  2KTL A;  4DV5 D;  4NXM D;  3KYD B;  4X65 D;  4DV6 D;  4II3 A;  2E5L D;  3J81 E;  1KSV A;  1HR0 D;  4OX9 D;  2VQE D;  4DR2 D;  4DUZ D;  4K0K D;  1VIO A;  1HNW D;  3KBG A;  5KNL A;  4LFB D;  1Y8R B;  4JYA D;  2JAN A;  3J7A F;  4JI4 D;  2UXC D;  4JV5 D;  3J80 E;  3HP7 A;  4LF5 D;  2HHH D;  4DR4 D;  5A2Q E;  2ZM6 D;  3T1Y D;  4W5V B;  1Y8X B;  3ONH A;  5LMN D;  4LF9 D;  4DV3 D;  4DV4 D;  1P9K A;  1XMO D;  4JI8 D;  1IBM D;  4NXN D;  3KYC B;  2UXB D;  1Y8Q B;  2L3N A;  1XMQ D;  4DUY D;  1J5E D;  4DR7 D;  3ONG A;  4YY3 D;  4LFC D;  1XNR D;  4AQY D;  1KSL A;  4B3T D;  1H3E A;  4JI6 D;  1C06 A;  1XNQ D;  1KSK A;  1H3F A;  4B3R D;  1C05 A;  4GKJ D;  4LF4 D;  4X64 D;  3OTO D;  4JI7 D;  4LF6 D;  1N36 D;  2UUA D;  4NNJ A;  4DV0 D;  2UUC D;  4JI2 D;  4JI3 D;  2F4V D; 
#chains in the Genus database with same CATH homology
 4X66 D;  1IBK D;  4DV1 D;  4LFA D;  4GKK D;  2UU9 D;  4DV7 D;  1N32 D;  4LF7 D;  4LF8 D;  1N34 D;  1FKA D;  2UXD D;  3T1H D;  1IBL D;  4DR1 D;  2UUB D;  4YHH D;  4X62 D;  4JI1 D;  1DM9 A;  4JI5 D;  1I94 D;  1HNZ D;  3DH3 A;  4DR6 D;  4KHP D;  2IST A;  5LMU D;  4LGT A;  1FJG D;  4B3S D;  2VQF D;  5BR8 D;  1HNX D;  4OUD A;  4B3M D;  4DV2 D;  4DR5 D;  5IWA D;  1N33 D;  4JI0 D;  1JH3 A;  4DR3 D;  2K6P A;  2KTL A;  4DV5 D;  4NXM D;  4X65 D;  4DV6 D;  2E5L D;  1KSV A;  1HR0 D;  4OX9 D;  2VQE D;  4DR2 D;  4DUZ D;  4K0K D;  1VIO A;  1HNW D;  3KBG A;  4LFB D;  4JYA D;  2JAN A;  4JI4 D;  2UXC D;  4JV5 D;  3HP7 A;  4LF5 D;  2HHH D;  4DR4 D;  2ZM6 D;  3T1Y D;  5LMN D;  4LF9 D;  4DV3 D;  4DV4 D;  1P9K A;  1XMO D;  4JI8 D;  1IBM D;  4NXN D;  2UXB D;  2L3N A;  1XMQ D;  4DUY D;  1J5E D;  4DR7 D;  4YY3 D;  4LFC D;  1XNR D;  4AQY D;  1KSL A;  4B3T D;  1H3E A;  4JI6 D;  1C06 A;  1XNQ D;  1KSK A;  1H3F A;  4B3R D;  1C05 A;  4GKJ D;  4LF4 D;  4X64 D;  3OTO D;  4JI7 D;  4LF6 D;  1N36 D;  2UUA D;  4DV0 D;  2UUC D;  4JI2 D;  4JI3 D;  2F4V D;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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1HNWD

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations