1JH3A

Solution structure of tyrosyl-trna synthetase c-terminal domain.
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
99
structure length
99
Chain Sequence
ALFSGDIANLTAAEIEQGFKDVPSFVHEGGDVPLVELLVSAGISPSKRQAREDIQNGAIYVNGERLQDVGAILTAEHRLEGRFTVIRRGKKKYYLIRYA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Structure and Dynamics of the Anticodon Arm Binding Domain of Bacillus stearothermophilus Tyrosyl-tRNA Synthetase
pubmed doi rcsb
molecule tags Ligase
source organism Geobacillus stearothermophilus
molecule keywords TYROSYL-TRNA SYNTHETASE
total genus 22
structure length 99
sequence length 99
ec nomenclature ec 6.1.1.1: Tyrosine--tRNA ligase.
pdb deposition date 2001-06-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01479 S4 S4 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.290.10 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A RNA-binding S4 domain 1jh3A00
1J5ED 5LMUD 2VQED 1FKAD 4LFBD 4LF7D 2ISTA 2ZM6D 4DV3D 1HNZD 4DR6D 4LF5D 1KSVA 2E5LD 2UUCD 4B3MD 3T1HD 4JI5D 4DV4D 2UUAD 4DUZD 5BR8D 1XNRD 1N34D 1DM9A 4DV2D 2HHHD 4GKKD 2UXDD 4JI3D 1N33D 4B3SD 4DR7D 4JI8D 4X64D 3HP7A 2JANA 4JI0D 1XMOD 1IBMD 4LF6D 4OUDA 4LGTA 4DUYD 4NXMD 4YY3D 4KHPD 3DH3A 1IBLD 1N36D 1C06A 1HR0D 4X66D 4DR2D 4LFCD 4LF9D 4DR4D 4GKJD 2UXCD 1H3EA 1FJGD 2UUBD 4LFAD 1VIOA 4X65D 4JI6D 1P9KA 2UU9D 4DV6D 4YHHD 1H3FA 1N32D 4OX9D 2VQFD 3KBGA 4JI7D 4DV0D 1XMQD 1HNWD 4NXND 1IBKD 3OTOD 4JI1D 5IWAD 4DR5D 2UXBD 4AQYD 1KSKA 1JH3A 4JI4D 4JV5D 4LF4D 3T1YD 1KSLA 4DR3D 4JI2D 1XNQD 4JYAD 4X62D 4B3RD 5LMND 4B3TD 2F4VD 4DV7D 4DR1D 4K0KD 2KTLA 1HNXD 4LF8D 1C05A 2K6PA 4DV5D 1I94D 4DV1D
chains in the Genus database with same CATH superfamily
1J5ED 5LMUD 2VQED 1FKAD 4LFBD 4LF7D 3J81E 2ISTA 2ZM6D 4DV3D 1HNZD 4DR6D 4II2A 4LF5D 1KSVA 2E5LD 2UUCD 4B3MD 3T1HD 4JI5D 4DV4D 5FQ2B 2UUAD 4DUZD 3J7AF 5BR8D 1XNRD 1N34D 1DM9A 1Y8XB 4DV2D 2HHHD 4GKKD 2UXDD 5A2QE 4JI3D 1N33D 2NVUB 4B3SD 4DR7D 4JI8D 4X64D 3HP7A 2JANA 4JI0D 1XMOD 1IBMD 4LF6D 2LQ7A 4OUDA 4LGTA 5LL6S 5IT9E 4DUYD 1Y8RB 4NXMD 4YY3D 4KHPD 3DH3A 1IBLD 1N36D 5FLXE 1C06A 3JAME 1HR0D 4X66D 4DR2D 4LFCD 4LF9D 4DR4D 4GKJD 2I1SA 1Y8QB 2UXCD 1H3EA 1FJGD 2UUBD 4LFAD 3CMMA 1VIOA 4X65D 4JI6D 1P9KA 3ONHA 4NNJA 4DV6D 2UU9D 4YHHD 1H3FA 1N32D 4OX9D 2VQFD 3KBGA 4JI7D 4DV0D 1XMQD 5KNLA 1HNWD 4NXND 1IBKD 3OTOD 4JI1D 3FN1A 5IWAD 4DR5D 4W5VB 2UXBD 4AQYD 1KSKA 1JH3A 3J80E 4JI4D 4JV5D 4LF4D 3T1YD 3KYDB 1KSLA 4DR3D 4JI2D 1XNQD 4JYAD 4X62D 4B3RD 5LMND 3ONGA 4B3TD 2F4VD 4DV7D 4DR1D 4K0KD 2KTLA 3KYCB 4II3A 2ZTBA 1HNXD 4LF8D 1C05A 2K6PA 4DV5D 1I94D 4DV1D
chains in the Genus database with same CATH topology
1J5ED 5LMUD 2VQED 1FKAD 4LFBD 4LF7D 2ISTA 2ZM6D 4DV3D 1HNZD 4DR6D 4LF5D 1KSVA 2E5LD 2UUCD 4B3MD 3T1HD 4JI5D 4DV4D 2UUAD 4DUZD 5BR8D 1XNRD 1N34D 1DM9A 4DV2D 2HHHD 4GKKD 2UXDD 4JI3D 1N33D 4B3SD 4DR7D 4JI8D 4X64D 3HP7A 2JANA 4JI0D 1XMOD 1IBMD 4LF6D 4OUDA 4LGTA 4DUYD 4NXMD 4YY3D 4KHPD 3DH3A 1IBLD 1N36D 1C06A 1HR0D 4X66D 4DR2D 4LFCD 4LF9D 4DR4D 4GKJD 2UXCD 1H3EA 1FJGD 2UUBD 4LFAD 1VIOA 4X65D 4JI6D 1P9KA 2UU9D 4DV6D 4YHHD 1H3FA 1N32D 4OX9D 2VQFD 3KBGA 4JI7D 4DV0D 1XMQD 1HNWD 4NXND 1IBKD 3OTOD 4JI1D 5IWAD 4DR5D 2UXBD 4AQYD 1KSKA 1JH3A 4JI4D 4JV5D 4LF4D 3T1YD 1KSLA 4DR3D 4JI2D 1XNQD 4JYAD 4X62D 4B3RD 5LMND 4B3TD 2F4VD 4DV7D 4DR1D 4K0KD 2KTLA 1HNXD 4LF8D 1C05A 2K6PA 4DV5D 1I94D 4DV1D
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1J5E D;  5LMU D;  2VQE D;  1FKA D;  4LFB D;  4LF7 D;  2IST A;  2ZM6 D;  4DV3 D;  1HNZ D;  4DR6 D;  4LF5 D;  1KSV A;  2E5L D;  2UUC D;  4B3M D;  3T1H D;  4JI5 D;  4DV4 D;  2UUA D;  4DUZ D;  5BR8 D;  1XNR D;  1N34 D;  1DM9 A;  4DV2 D;  2HHH D;  4GKK D;  2UXD D;  4JI3 D;  1N33 D;  4B3S D;  4DR7 D;  4JI8 D;  4X64 D;  3HP7 A;  2JAN A;  4JI0 D;  1XMO D;  1IBM D;  4LF6 D;  4OUD A;  4LGT A;  4DUY D;  4NXM D;  4YY3 D;  4KHP D;  3DH3 A;  1IBL D;  1N36 D;  1C06 A;  1HR0 D;  4X66 D;  4DR2 D;  4LFC D;  4LF9 D;  4DR4 D;  4GKJ D;  2UXC D;  1H3E A;  1FJG D;  2UUB D;  4LFA D;  1VIO A;  4X65 D;  4JI6 D;  1P9K A;  2UU9 D;  4DV6 D;  4YHH D;  1H3F A;  1N32 D;  4OX9 D;  2VQF D;  3KBG A;  4JI7 D;  4DV0 D;  1XMQ D;  1HNW D;  4NXN D;  1IBK D;  3OTO D;  4JI1 D;  5IWA D;  4DR5 D;  2UXB D;  4AQY D;  1KSK A;  1JH3 A;  4JI4 D;  4JV5 D;  4LF4 D;  3T1Y D;  1KSL A;  4DR3 D;  4JI2 D;  1XNQ D;  4JYA D;  4X62 D;  4B3R D;  5LMN D;  4B3T D;  2F4V D;  4DV7 D;  4DR1 D;  4K0K D;  2KTL A;  1HNX D;  4LF8 D;  1C05 A;  2K6P A;  4DV5 D;  1I94 D;  4DV1 D; 
#chains in the Genus database with same CATH topology
 1J5E D;  5LMU D;  2VQE D;  1FKA D;  4LFB D;  4LF7 D;  3J81 E;  2IST A;  2ZM6 D;  4DV3 D;  1HNZ D;  4DR6 D;  4II2 A;  4LF5 D;  1KSV A;  2E5L D;  2UUC D;  4B3M D;  3T1H D;  4JI5 D;  4DV4 D;  5FQ2 B;  2UUA D;  4DUZ D;  3J7A F;  5BR8 D;  1XNR D;  1N34 D;  1DM9 A;  1Y8X B;  4DV2 D;  2HHH D;  4GKK D;  2UXD D;  5A2Q E;  4JI3 D;  1N33 D;  2NVU B;  4B3S D;  4DR7 D;  4JI8 D;  4X64 D;  3HP7 A;  2JAN A;  4JI0 D;  1XMO D;  1IBM D;  4LF6 D;  2LQ7 A;  4OUD A;  4LGT A;  5LL6 S;  5IT9 E;  4DUY D;  1Y8R B;  4NXM D;  4YY3 D;  4KHP D;  3DH3 A;  1IBL D;  1N36 D;  5FLX E;  1C06 A;  3JAM E;  1HR0 D;  4X66 D;  4DR2 D;  4LFC D;  4LF9 D;  4DR4 D;  4GKJ D;  2I1S A;  1Y8Q B;  2UXC D;  1H3E A;  1FJG D;  2UUB D;  4LFA D;  3CMM A;  1VIO A;  4X65 D;  4JI6 D;  1P9K A;  3ONH A;  4NNJ A;  4DV6 D;  2UU9 D;  4YHH D;  1H3F A;  1N32 D;  4OX9 D;  2VQF D;  3KBG A;  4JI7 D;  4DV0 D;  1XMQ D;  5KNL A;  1HNW D;  4NXN D;  1IBK D;  3OTO D;  4JI1 D;  3FN1 A;  5IWA D;  4DR5 D;  4W5V B;  2UXB D;  4AQY D;  1KSK A;  1JH3 A;  3J80 E;  4JI4 D;  4JV5 D;  4LF4 D;  3T1Y D;  3KYD B;  1KSL A;  4DR3 D;  4JI2 D;  1XNQ D;  4JYA D;  4X62 D;  4B3R D;  5LMN D;  3ONG A;  4B3T D;  2F4V D;  4DV7 D;  4DR1 D;  4K0K D;  2KTL A;  3KYC B;  4II3 A;  2ZTB A;  1HNX D;  4LF8 D;  1C05 A;  2K6P A;  4DV5 D;  1I94 D;  4DV1 D; 
#chains in the Genus database with same CATH homology
 1J5E D;  5LMU D;  2VQE D;  1FKA D;  4LFB D;  4LF7 D;  2IST A;  2ZM6 D;  4DV3 D;  1HNZ D;  4DR6 D;  4LF5 D;  1KSV A;  2E5L D;  2UUC D;  4B3M D;  3T1H D;  4JI5 D;  4DV4 D;  2UUA D;  4DUZ D;  5BR8 D;  1XNR D;  1N34 D;  1DM9 A;  4DV2 D;  2HHH D;  4GKK D;  2UXD D;  4JI3 D;  1N33 D;  4B3S D;  4DR7 D;  4JI8 D;  4X64 D;  3HP7 A;  2JAN A;  4JI0 D;  1XMO D;  1IBM D;  4LF6 D;  4OUD A;  4LGT A;  4DUY D;  4NXM D;  4YY3 D;  4KHP D;  3DH3 A;  1IBL D;  1N36 D;  1C06 A;  1HR0 D;  4X66 D;  4DR2 D;  4LFC D;  4LF9 D;  4DR4 D;  4GKJ D;  2UXC D;  1H3E A;  1FJG D;  2UUB D;  4LFA D;  1VIO A;  4X65 D;  4JI6 D;  1P9K A;  2UU9 D;  4DV6 D;  4YHH D;  1H3F A;  1N32 D;  4OX9 D;  2VQF D;  3KBG A;  4JI7 D;  4DV0 D;  1XMQ D;  1HNW D;  4NXN D;  1IBK D;  3OTO D;  4JI1 D;  5IWA D;  4DR5 D;  2UXB D;  4AQY D;  1KSK A;  1JH3 A;  4JI4 D;  4JV5 D;  4LF4 D;  3T1Y D;  1KSL A;  4DR3 D;  4JI2 D;  1XNQ D;  4JYA D;  4X62 D;  4B3R D;  5LMN D;  4B3T D;  2F4V D;  4DV7 D;  4DR1 D;  4K0K D;  2KTL A;  1HNX D;  4LF8 D;  1C05 A;  2K6P A;  4DV5 D;  1I94 D;  4DV1 D;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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