1R5ZA

Crystal structure of subunit c of v-atpase
Total Genus 123
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
123
sequence length
320
structure length
320
Chain Sequence
DDFAYLNARVRVRRGTLLKESFFQEALDLSFADFLRLLSETVYGGELAGQGLPDVDRAVLRTQAKLVGDLPRLVTGEAREAVRLLLLRNDLHNLQALLRAKATGRPFEEVLLLPGTLREEVWRQAYEAQDPAGMAQVLAVPGHPLARALRAVLRETQDLARVEALLAKRFFEDVAKAAKGLDQPALRDYLALEVDAENLRTAFKLQGSGLAPDAFFLKGGRFVDRVRFARLMEGDYAVLDELSGTPFSGLSGVRDLKALERGLRCVLLKEAKKGVQDPLGVGLVLAYVKEREWEAVRLRLLARRAYFGLPRAQVEEEVVC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a central stalk subunit C and reversible association/dissociation of vacuole-type ATPase.
pubmed doi rcsb
molecule tags Hydrolase
source organism Thermus thermophilus
molecule keywords V-type ATP synthase subunit C
total genus 123
structure length 320
sequence length 320
chains with identical sequence B, C
ec nomenclature ec 3.6.3.14: Transferred entry: 7.1.2.2.
pdb deposition date 2003-10-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01992 vATP-synt_AC39 ATP synthase (C/AC39) subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.50 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 1r5zA01
1.20.1690.10 Mainly Alpha Up-down Bundle V-type ATP synthase subunit C fold V-type ATP synthase subunit C domain 1r5zA02
1.20.1690.10 Mainly Alpha Up-down Bundle V-type ATP synthase subunit C fold V-type ATP synthase subunit C domain 1r5zA03
1V9MA 1R5ZA
chains in the Genus database with same CATH superfamily
4IP8A 1ZYRD 3GTMA 1GE9A 1SFOA 1TWCA 4QCLA 1Y1VA 1Q8IA 2QQPA 5JSNB 1TWHA 2PMZA 1R9TA 4JLRC 4D3ZA 3HKZA 4AHCA 4L8IA 1R49A 5MLC9 1EK8A 1NH3A 4IP9A 3GTQA 2Y0SA 4AN8A 3K58A 1TGOA 1T8IA 1K4SA 1WQHA 1RRJA 4NOMA 1K83A 5C9HA 3GTKA 2E2HA 2BE5D 1EH1A 3K59A 4F3EA 1SC7A 4GFQA 4QIWA 3K5NA 5JSBB 4H3TA 1K4TA 2B63A 2A6HD 2E2IA 1TWAA 2A68D 4NOLA 4EJ3A 1RR8C 4KB2A 1SEUA 2R7ZA 3S6PA 4AYBA 2R4GA 1YNJD 1A36A 4Q5GA 1SMYD 4NOKA 1I50A 1WQFA 1ISEA 4FGUA 1IS1A 3WVOA 3DU6A 4LMOA 3DU5A 1R5ZA 3LHPS 2R92A 2R93A 4C2MA 4O26A 2NVXA 1V9MA 4FYDA 2CW0D 1IW7D 4OYDB 4D3YA 2WAQA 3GTLA 3H0GA 3SJRA 2YU9A 3GTOA 4KC6A 3K5LA 2VUMA 4KDDA 1MIUA 3K57A 1Y698 1I3QA 3KYLA 1A35A 4Q5VA 3LF9A 1TL8A 3GTGA 4FXDA 3GTPA 3IAYA 2JA5A 2JA7A 3FKIA 2JA6A 3P9AA 1Y1WA 4KAWX 2WB1A 3MAQA 3M4AA 2A69D 5CQGA 3K5MA 1LPQA 2F4QA 3GTJA 1OHFA 2A6ED 1HQMD 1TWFA 2O5JD 4KB4A 2B9SB 3CQZA 1TWGA 1EJ9A 1YNND 1WCMA 1A31A 1DD5A 2NVYA 1WQGA 3K5OA 1I6VD
chains in the Genus database with same CATH topology
4IP8A 1ZYRD 3GTMA 1GE9A 1SFOA 1TWCA 4QCLA 1Y1VA 1Q8IA 5JSNB 1TWHA 2PMZA 1R9TA 4JLRC 4D3ZA 3HKZA 4AHCA 4L8IA 1R49A 5MLC9 1EK8A 1NH3A 4IP9A 3GTQA 2Y0SA 4AN8A 3K58A 1TGOA 1T8IA 1K4SA 1WQHA 1RRJA 4NOMA 1K83A 5C9HA 3GTKA 2E2HA 2BE5D 1EH1A 3K59A 4F3EA 1SC7A 4GFQA 4QIWA 3K5NA 5JSBB 4H3TA 1K4TA 2B63A 2A6HD 2E2IA 1TWAA 2A68D 4NOLA 4EJ3A 1RR8C 4KB2A 1SEUA 2R7ZA 4AYBA 2R4GA 1YNJD 1A36A 4Q5GA 1SMYD 4NOKA 1I50A 1WQFA 1ISEA 4FGUA 1IS1A 3WVOA 3DU6A 4LMOA 3DU5A 1R5ZA 3LHPS 2R92A 2R93A 4C2MA 4O26A 2NVXA 1V9MA 4FYDA 2CW0D 1IW7D 4OYDB 4D3YA 2WAQA 3GTLA 3H0GA 3SJRA 2YU9A 3GTOA 4KC6A 3K5LA 2VUMA 4KDDA 1MIUA 3K57A 1Y698 1I3QA 3KYLA 1A35A 4Q5VA 3LF9A 1TL8A 3GTGA 4FXDA 3GTPA 3IAYA 2JA5A 2JA7A 3FKIA 2JA6A 3P9AA 1Y1WA 4KAWX 2WB1A 3MAQA 3M4AA 2A69D 5CQGA 3K5MA 1LPQA 2F4QA 3GTJA 2A6ED 1HQMD 1TWFA 2O5JD 4KB4A 2B9SB 3CQZA 1TWGA 1EJ9A 1YNND 1WCMA 1A31A 1DD5A 2NVYA 1WQGA 3K5OA 1I6VD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1V9M A;  1R5Z A; 
#chains in the Genus database with same CATH topology
 4IP8 A;  1ZYR D;  3GTM A;  1GE9 A;  1SFO A;  1TWC A;  4QCL A;  1Y1V A;  1Q8I A;  2QQP A;  5JSN B;  1TWH A;  2PMZ A;  1R9T A;  4JLR C;  4D3Z A;  3HKZ A;  4AHC A;  4L8I A;  1R49 A;  5MLC 9;  1EK8 A;  1NH3 A;  4IP9 A;  3GTQ A;  2Y0S A;  4AN8 A;  3K58 A;  1TGO A;  1T8I A;  1K4S A;  1WQH A;  1RRJ A;  4NOM A;  1K83 A;  5C9H A;  3GTK A;  2E2H A;  2BE5 D;  1EH1 A;  3K59 A;  4F3E A;  1SC7 A;  4GFQ A;  4QIW A;  3K5N A;  5JSB B;  4H3T A;  1K4T A;  2B63 A;  2A6H D;  2E2I A;  1TWA A;  2A68 D;  4NOL A;  4EJ3 A;  1RR8 C;  4KB2 A;  1SEU A;  2R7Z A;  3S6P A;  4AYB A;  2R4G A;  1YNJ D;  1A36 A;  4Q5G A;  1SMY D;  4NOK A;  1I50 A;  1WQF A;  1ISE A;  4FGU A;  1IS1 A;  3WVO A;  3DU6 A;  4LMO A;  3DU5 A;  1R5Z A;  3LHP S;  2R92 A;  2R93 A;  4C2M A;  4O26 A;  2NVX A;  1V9M A;  4FYD A;  2CW0 D;  1IW7 D;  4OYD B;  4D3Y A;  2WAQ A;  3GTL A;  3H0G A;  3SJR A;  2YU9 A;  3GTO A;  4KC6 A;  3K5L A;  2VUM A;  4KDD A;  1MIU A;  3K57 A;  1Y69 8;  1I3Q A;  3KYL A;  1A35 A;  4Q5V A;  3LF9 A;  1TL8 A;  3GTG A;  4FXD A;  3GTP A;  3IAY A;  2JA5 A;  2JA7 A;  3FKI A;  2JA6 A;  3P9A A;  1Y1W A;  4KAW X;  2WB1 A;  3MAQ A;  3M4A A;  2A69 D;  5CQG A;  3K5M A;  1LPQ A;  2F4Q A;  3GTJ A;  1OHF A;  2A6E D;  1HQM D;  1TWF A;  2O5J D;  4KB4 A;  2B9S B;  3CQZ A;  1TWG A;  1EJ9 A;  1YNN D;  1WCM A;  1A31 A;  1DD5 A;  2NVY A;  1WQG A;  3K5O A;  1I6V D; 
#chains in the Genus database with same CATH homology
 4IP8 A;  1ZYR D;  3GTM A;  1GE9 A;  1SFO A;  1TWC A;  4QCL A;  1Y1V A;  1Q8I A;  5JSN B;  1TWH A;  2PMZ A;  1R9T A;  4JLR C;  4D3Z A;  3HKZ A;  4AHC A;  4L8I A;  1R49 A;  5MLC 9;  1EK8 A;  1NH3 A;  4IP9 A;  3GTQ A;  2Y0S A;  4AN8 A;  3K58 A;  1TGO A;  1T8I A;  1K4S A;  1WQH A;  1RRJ A;  4NOM A;  1K83 A;  5C9H A;  3GTK A;  2E2H A;  2BE5 D;  1EH1 A;  3K59 A;  4F3E A;  1SC7 A;  4GFQ A;  4QIW A;  3K5N A;  5JSB B;  4H3T A;  1K4T A;  2B63 A;  2A6H D;  2E2I A;  1TWA A;  2A68 D;  4NOL A;  4EJ3 A;  1RR8 C;  4KB2 A;  1SEU A;  2R7Z A;  4AYB A;  2R4G A;  1YNJ D;  1A36 A;  4Q5G A;  1SMY D;  4NOK A;  1I50 A;  1WQF A;  1ISE A;  4FGU A;  1IS1 A;  3WVO A;  3DU6 A;  4LMO A;  3DU5 A;  1R5Z A;  3LHP S;  2R92 A;  2R93 A;  4C2M A;  4O26 A;  2NVX A;  1V9M A;  4FYD A;  2CW0 D;  1IW7 D;  4OYD B;  4D3Y A;  2WAQ A;  3GTL A;  3H0G A;  3SJR A;  2YU9 A;  3GTO A;  4KC6 A;  3K5L A;  2VUM A;  4KDD A;  1MIU A;  3K57 A;  1Y69 8;  1I3Q A;  3KYL A;  1A35 A;  4Q5V A;  3LF9 A;  1TL8 A;  3GTG A;  4FXD A;  3GTP A;  3IAY A;  2JA5 A;  2JA7 A;  3FKI A;  2JA6 A;  3P9A A;  1Y1W A;  4KAW X;  2WB1 A;  3MAQ A;  3M4A A;  2A69 D;  5CQG A;  3K5M A;  1LPQ A;  2F4Q A;  3GTJ A;  2A6E D;  1HQM D;  1TWF A;  2O5J D;  4KB4 A;  2B9S B;  3CQZ A;  1TWG A;  1EJ9 A;  1YNN D;  1WCM A;  1A31 A;  1DD5 A;  2NVY A;  1WQG A;  3K5O A;  1I6V D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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