1V9MA

Crystal structure of the c subunit of v-type atpase from thermus thermophilus
Total Genus 118
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
118
sequence length
319
structure length
312
Chain Sequence
FAYLNARVRVRRGTLLKESFFQEALDLSFADFLRLLSETVYGGELAGQGLPDVDRAVLRTQAKLVGDLPRLVTGEAREAVRLLLLRNDLHNLQALLRAKATGRPFEEVLLLPGTLREEVWRQAYEAQDPAGMAQVLAVPGHPLARALRAVLRETQDLARVEALLAKRFFEDVAKPALRDYLALEVDAENLRTAFKLQGSGLAPDAFFLKGGRFVDRVRFARLMEGDYAVLDELSGTPFSGLSGVRDLKALERGLRCVLLKEAKKGVQDPLGVGLVLAYVKEREWEAVRLRLLARRAYFGLPRAQVEEEVVCP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of the C subunit of V-type ATPase from Thermus thermophilus at 1.85 A resolution.
pubmed doi rcsb
molecule tags Hydrolase
source organism Thermus thermophilus
molecule keywords V-type ATP synthase subunit C
total genus 118
structure length 312
sequence length 319
ec nomenclature ec 3.6.3.14: Transferred entry: 7.1.2.2.
pdb deposition date 2004-01-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01992 vATP-synt_AC39 ATP synthase (C/AC39) subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.50 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 1v9mA01
1.20.1690.10 Mainly Alpha Up-down Bundle V-type ATP synthase subunit C fold V-type ATP synthase subunit C domain 1v9mA02
1.20.1690.10 Mainly Alpha Up-down Bundle V-type ATP synthase subunit C fold V-type ATP synthase subunit C domain 1v9mA03
1V9MA 1R5ZA
chains in the Genus database with same CATH superfamily
2E2HA 4NOLA 1SMYD 4KAWX 4L8IA 3K57A 1DD5A 4NOKA 4D3YA 4LMOA 3K5MA 2B9SB 3K58A 1NH3A 1I3QA 3HKZA 2QQPA 1TGOA 1SFOA 2F4QA 4OYDB 4IP8A 5C9HA 3KYLA 4Q5VA 1RR8C 1TWHA 2Y0SA 2VUMA 1YNND 5JSNB 1IS1A 2JA6A 1WQHA 3FKIA 2O5JD 1A35A 4IP9A 1R9TA 4F3EA 5MLC9 2JA7A 3CQZA 4FGUA 2A69D 4O26A 4C2MA 3M4AA 1I50A 2A68D 2CW0D 1T8IA 2WAQA 2A6ED 1TWAA 2WB1A 3H0GA 4Q5GA 2NVYA 2E2IA 3MAQA 5JSBB 4H3TA 1I6VD 4EJ3A 2R4GA 3K59A 1A31A 3S6PA 1YNJD 2JA5A 3DU6A 1EJ9A 3K5OA 4QCLA 3K5LA 4AN8A 4AHCA 1HQMD 4NOMA 4QIWA 4KC6A 3GTPA 3IAYA 2R92A 1WQGA 1V9MA 1TWCA 3GTGA 1TL8A 1A36A 1WQFA 4KDDA 3P9AA 1EK8A 1WCMA 1MIUA 1Y1WA 3DU5A 1ZYRD 1TWGA 1K83A 1RRJA 2BE5D 4AYBA 3GTLA 1K4TA 2R93A 2PMZA 1GE9A 4D3ZA 1R5ZA 1SC7A 4JLRC 1Y698 4FYDA 1IW7D 5CQGA 1R49A 3GTOA 3LHPS 2B63A 1Q8IA 2R7ZA 4FXDA 3GTMA 2YU9A 1OHFA 3LF9A 4GFQA 1K4SA 3GTKA 3WVOA 3GTJA 3GTQA 1Y1VA 4KB4A 3K5NA 2A6HD 3SJRA 1ISEA 1SEUA 1TWFA 4KB2A 2NVXA 1LPQA 1EH1A
chains in the Genus database with same CATH topology
2E2HA 4NOLA 1SMYD 4KAWX 4L8IA 3K57A 1DD5A 4NOKA 4D3YA 4LMOA 3K5MA 2B9SB 3K58A 1NH3A 1I3QA 3HKZA 1TGOA 1SFOA 2F4QA 4OYDB 4IP8A 5C9HA 3KYLA 4Q5VA 1RR8C 1TWHA 2Y0SA 2VUMA 1YNND 5JSNB 1IS1A 2JA6A 1WQHA 3FKIA 2O5JD 1A35A 4IP9A 1R9TA 4F3EA 5MLC9 2JA7A 3CQZA 4FGUA 2A69D 4O26A 4C2MA 3M4AA 1I50A 2A68D 2CW0D 1T8IA 2WAQA 2A6ED 1TWAA 2WB1A 3H0GA 4Q5GA 2NVYA 2E2IA 3MAQA 5JSBB 4H3TA 1I6VD 4EJ3A 2R4GA 3K59A 1A31A 1YNJD 2JA5A 3DU6A 1EJ9A 3K5OA 4QCLA 3K5LA 4AN8A 4AHCA 1HQMD 4NOMA 4QIWA 4KC6A 3GTPA 3IAYA 2R92A 1WQGA 1V9MA 1TWCA 3GTGA 1TL8A 1A36A 1WQFA 4KDDA 3P9AA 1EK8A 1WCMA 1MIUA 1Y1WA 3DU5A 1ZYRD 1TWGA 1K83A 1RRJA 2BE5D 4AYBA 3GTLA 1K4TA 2R93A 2PMZA 1GE9A 4D3ZA 1R5ZA 1SC7A 4JLRC 1Y698 4FYDA 1IW7D 5CQGA 1R49A 3GTOA 3LHPS 2B63A 1Q8IA 2R7ZA 4FXDA 3GTMA 2YU9A 3LF9A 4GFQA 1K4SA 3GTKA 3WVOA 3GTJA 3GTQA 1Y1VA 4KB4A 3K5NA 2A6HD 3SJRA 1ISEA 1SEUA 1TWFA 4KB2A 2NVXA 1LPQA 1EH1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1V9M A;  1R5Z A; 
#chains in the Genus database with same CATH topology
 2E2H A;  4NOL A;  1SMY D;  4KAW X;  4L8I A;  3K57 A;  1DD5 A;  4NOK A;  4D3Y A;  4LMO A;  3K5M A;  2B9S B;  3K58 A;  1NH3 A;  1I3Q A;  3HKZ A;  2QQP A;  1TGO A;  1SFO A;  2F4Q A;  4OYD B;  4IP8 A;  5C9H A;  3KYL A;  4Q5V A;  1RR8 C;  1TWH A;  2Y0S A;  2VUM A;  1YNN D;  5JSN B;  1IS1 A;  2JA6 A;  1WQH A;  3FKI A;  2O5J D;  1A35 A;  4IP9 A;  1R9T A;  4F3E A;  5MLC 9;  2JA7 A;  3CQZ A;  4FGU A;  2A69 D;  4O26 A;  4C2M A;  3M4A A;  1I50 A;  2A68 D;  2CW0 D;  1T8I A;  2WAQ A;  2A6E D;  1TWA A;  2WB1 A;  3H0G A;  4Q5G A;  2NVY A;  2E2I A;  3MAQ A;  5JSB B;  4H3T A;  1I6V D;  4EJ3 A;  2R4G A;  3K59 A;  1A31 A;  3S6P A;  1YNJ D;  2JA5 A;  3DU6 A;  1EJ9 A;  3K5O A;  4QCL A;  3K5L A;  4AN8 A;  4AHC A;  1HQM D;  4NOM A;  4QIW A;  4KC6 A;  3GTP A;  3IAY A;  2R92 A;  1WQG A;  1V9M A;  1TWC A;  3GTG A;  1TL8 A;  1A36 A;  1WQF A;  4KDD A;  3P9A A;  1EK8 A;  1WCM A;  1MIU A;  1Y1W A;  3DU5 A;  1ZYR D;  1TWG A;  1K83 A;  1RRJ A;  2BE5 D;  4AYB A;  3GTL A;  1K4T A;  2R93 A;  2PMZ A;  1GE9 A;  4D3Z A;  1R5Z A;  1SC7 A;  4JLR C;  1Y69 8;  4FYD A;  1IW7 D;  5CQG A;  1R49 A;  3GTO A;  3LHP S;  2B63 A;  1Q8I A;  2R7Z A;  4FXD A;  3GTM A;  2YU9 A;  1OHF A;  3LF9 A;  4GFQ A;  1K4S A;  3GTK A;  3WVO A;  3GTJ A;  3GTQ A;  1Y1V A;  4KB4 A;  3K5N A;  2A6H D;  3SJR A;  1ISE A;  1SEU A;  1TWF A;  4KB2 A;  2NVX A;  1LPQ A;  1EH1 A; 
#chains in the Genus database with same CATH homology
 2E2H A;  4NOL A;  1SMY D;  4KAW X;  4L8I A;  3K57 A;  1DD5 A;  4NOK A;  4D3Y A;  4LMO A;  3K5M A;  2B9S B;  3K58 A;  1NH3 A;  1I3Q A;  3HKZ A;  1TGO A;  1SFO A;  2F4Q A;  4OYD B;  4IP8 A;  5C9H A;  3KYL A;  4Q5V A;  1RR8 C;  1TWH A;  2Y0S A;  2VUM A;  1YNN D;  5JSN B;  1IS1 A;  2JA6 A;  1WQH A;  3FKI A;  2O5J D;  1A35 A;  4IP9 A;  1R9T A;  4F3E A;  5MLC 9;  2JA7 A;  3CQZ A;  4FGU A;  2A69 D;  4O26 A;  4C2M A;  3M4A A;  1I50 A;  2A68 D;  2CW0 D;  1T8I A;  2WAQ A;  2A6E D;  1TWA A;  2WB1 A;  3H0G A;  4Q5G A;  2NVY A;  2E2I A;  3MAQ A;  5JSB B;  4H3T A;  1I6V D;  4EJ3 A;  2R4G A;  3K59 A;  1A31 A;  1YNJ D;  2JA5 A;  3DU6 A;  1EJ9 A;  3K5O A;  4QCL A;  3K5L A;  4AN8 A;  4AHC A;  1HQM D;  4NOM A;  4QIW A;  4KC6 A;  3GTP A;  3IAY A;  2R92 A;  1WQG A;  1V9M A;  1TWC A;  3GTG A;  1TL8 A;  1A36 A;  1WQF A;  4KDD A;  3P9A A;  1EK8 A;  1WCM A;  1MIU A;  1Y1W A;  3DU5 A;  1ZYR D;  1TWG A;  1K83 A;  1RRJ A;  2BE5 D;  4AYB A;  3GTL A;  1K4T A;  2R93 A;  2PMZ A;  1GE9 A;  4D3Z A;  1R5Z A;  1SC7 A;  4JLR C;  1Y69 8;  4FYD A;  1IW7 D;  5CQG A;  1R49 A;  3GTO A;  3LHP S;  2B63 A;  1Q8I A;  2R7Z A;  4FXD A;  3GTM A;  2YU9 A;  3LF9 A;  4GFQ A;  1K4S A;  3GTK A;  3WVO A;  3GTJ A;  3GTQ A;  1Y1V A;  4KB4 A;  3K5N A;  2A6H D;  3SJR A;  1ISE A;  1SEU A;  1TWF A;  4KB2 A;  2NVX A;  1LPQ A;  1EH1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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