2E5L | Genus

Total Genus 51

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	51
sequence length	208
structure length	208
Chain Sequence	GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQLVIEFYSR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ribosome
publication title	A snapshot of the 30S ribosomal subunit capturing mRNA via the Shine-Dalgarno interaction pubmed doi rcsb
molecule keywords	16S ribosomal RNA
total genus	51
structure length	208
sequence length	208
ec nomenclature
pdb deposition date	2006-12-21

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
D	PF00163	Ribosomal_S4	Ribosomal protein S4/S9 N-terminal domain
D	PF01479	S4	S4 domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1050.10	Mainly Alpha	Orthogonal Bundle	Ribosomal Protein S4 Delta 41; Chain A, domain 1	Ribosomal Protein S4 Delta 41; Chain A, domain 1	2e5lD01
3.10.290.10	Alpha Beta	Roll	Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A	RNA-binding S4 domain	2e5lD02

4X62D 4JI2D 3OTOD 4NXND 1I94D 4OUDA 4JI8D 2UU9D 4X66D 4X64D 4JI4D 4KHPD 4LF6D 4OX9D 3DH3A 4YHHD 4DR5D 4DR2D 1XMOD 4LF8D 2UXCD 4DV7D 1IBMD 5LMUD 4B3TD 1J5ED 2KTLA 3KBGA 1N33D 1XNQD 2F4VD 4YY3D 4DR7D 4B3SD 4JI6D 1XNRD 2UXBD 1C05A 1P9KA 4GKJD 1IBKD 4JI1D 2HHHD 4JYAD 4GKKD 2K6PA 1C06A 2VQFD 1XMQD 4NXMD 1N32D 5BR8D 4DR4D 3T1YD 4LF9D 2VQED 1KSKA 1IBLD 1DM9A 4B3MD 4JV5D 4LFBD 4DV0D 4LGTA 4JI0D 4X65D 1FJGD 2ZM6D 4JI7D 4DR1D 2UUBD 1HNZD 4LFAD 3T1HD 1N34D 5IWAD 4K0KD 3HP7A 1HR0D 2ISTA 1KSLA 1H3EA 4DV3D 2E5LD 2JANA 4JI5D 4DR6D 1HNWD 1H3FA 4JI3D 4DR3D 2UUCD 4LF7D 4DV1D 4DV2D 1FKAD 1N36D 4LFCD 2UXDD 1KSVA 4DUZD 2UUAD 4DUYD 4LF5D 5LMND 4AQYD 4LF4D 4B3RD 4DV4D 4DV6D 1VIOA 1JH3A 1HNXD 4DV5D
chains in the Genus database with same CATH superfamily

4X62D 3J7AF 4JI2D 3OTOD 3J80E 4NXND 1I94D 4OUDA 5A2QE 4JI8D 2UU9D 4X66D 4X64D 4JI4D 4KHPD 4LF6D 4OX9D 3DH3A 4YHHD 4DR5D 4DR2D 1XMOD 4LF8D 2NVUB 2UXCD 1Y8QB 4DV7D 1IBMD 5LMUD 4B3TD 1J5ED 2KTLA 4II3A 3KBGA 1N33D 1XNQD 2F4VD 4YY3D 4DR7D 4B3SD 4JI6D 1XNRD 2UXBD 1C05A 1P9KA 4GKJD 1IBKD 4JI1D 2HHHD 4JYAD 3KYDB 4GKKD 4II2A 2K6PA 1C06A 3FN1A 2VQFD 1XMQD 4NXMD 1N32D 5BR8D 4DR4D 3T1YD 3ONHA 4LF9D 2VQED 1KSKA 1IBLD 1DM9A 5IT9E 4B3MD 4JV5D 4LFBD 4DV0D 5FQ2B 4LGTA 2L3NA 4JI0D 3ONGA 4X65D 1FJGD 2ZM6D 4JI7D 4DR1D 2UUBD 1HNZD 4NNJA 4LFAD 3T1HD 1N34D 5LL6S 3JAME 4W5VB 5IWAD 4K0KD 3HP7A 5KNLA 1HR0D 2ISTA 1KSLA 1H3EA 4DV3D 2E5LD 2JANA 4JI5D 4DR6D 1HNWD 1H3FA 1Y8RB 4JI3D 1Y8XB 4DR3D 3CMMA 2UUCD 4LF7D 4DV1D 4DV2D 1FKAD 3KYCB 1N36D 4LFCD 5FLXE 2UXDD 1KSVA 4DUZD 2UUAD 2ZTBA 4DUYD 3J81E 4LF5D 2I1SA 5LMND 4AQYD 4LF4D 4B3RD 2LQ7A 4DV4D 4DV6D 1VIOA 1JH3A 1HNXD 4DV5D
chains in the Genus database with same CATH topology

4X62D 4JI2D 3OTOD 4NXND 1I94D 4OUDA 4JI8D 2UU9D 4X66D 4X64D 4JI4D 4KHPD 4LF6D 4OX9D 3DH3A 4YHHD 4DR5D 4DR2D 1XMOD 4LF8D 2UXCD 4DV7D 1IBMD 5LMUD 4B3TD 1J5ED 2KTLA 3KBGA 1N33D 1XNQD 2F4VD 4YY3D 4DR7D 4B3SD 4JI6D 1XNRD 2UXBD 1C05A 1P9KA 4GKJD 1IBKD 4JI1D 2HHHD 4JYAD 4GKKD 2K6PA 1C06A 2VQFD 1XMQD 4NXMD 1N32D 5BR8D 4DR4D 3T1YD 4LF9D 2VQED 1KSKA 1IBLD 1DM9A 4B3MD 4JV5D 4LFBD 4DV0D 4LGTA 2L3NA 4JI0D 4X65D 1FJGD 2ZM6D 4JI7D 4DR1D 2UUBD 1HNZD 4LFAD 3T1HD 1N34D 5IWAD 4K0KD 3HP7A 1HR0D 2ISTA 1KSLA 1H3EA 4DV3D 2E5LD 2JANA 4JI5D 4DR6D 1HNWD 1H3FA 4JI3D 4DR3D 2UUCD 4LF7D 4DV1D 4DV2D 1FKAD 1N36D 4LFCD 2UXDD 1KSVA 4DUZD 2UUAD 4DUYD 4LF5D 5LMND 4AQYD 4LF4D 4B3RD 4DV4D 4DV6D 1VIOA 1JH3A 1HNXD 4DV5D
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4X62 D;  4JI2 D;  3OTO D;  4NXN D;  1I94 D;  4OUD A;  4JI8 D;  2UU9 D;  4X66 D;  4X64 D;  4JI4 D;  4KHP D;  4LF6 D;  4OX9 D;  3DH3 A;  4YHH D;  4DR5 D;  4DR2 D;  1XMO D;  4LF8 D;  2UXC D;  4DV7 D;  1IBM D;  5LMU D;  4B3T D;  1J5E D;  2KTL A;  3KBG A;  1N33 D;  1XNQ D;  2F4V D;  4YY3 D;  4DR7 D;  4B3S D;  4JI6 D;  1XNR D;  2UXB D;  1C05 A;  1P9K A;  4GKJ D;  1IBK D;  4JI1 D;  2HHH D;  4JYA D;  4GKK D;  2K6P A;  1C06 A;  2VQF D;  1XMQ D;  4NXM D;  1N32 D;  5BR8 D;  4DR4 D;  3T1Y D;  4LF9 D;  2VQE D;  1KSK A;  1IBL D;  1DM9 A;  4B3M D;  4JV5 D;  4LFB D;  4DV0 D;  4LGT A;  4JI0 D;  4X65 D;  1FJG D;  2ZM6 D;  4JI7 D;  4DR1 D;  2UUB D;  1HNZ D;  4LFA D;  3T1H D;  1N34 D;  5IWA D;  4K0K D;  3HP7 A;  1HR0 D;  2IST A;  1KSL A;  1H3E A;  4DV3 D;  2E5L D;  2JAN A;  4JI5 D;  4DR6 D;  1HNW D;  1H3F A;  4JI3 D;  4DR3 D;  2UUC D;  4LF7 D;  4DV1 D;  4DV2 D;  1FKA D;  1N36 D;  4LFC D;  2UXD D;  1KSV A;  4DUZ D;  2UUA D;  4DUY D;  4LF5 D;  5LMN D;  4AQY D;  4LF4 D;  4B3R D;  4DV4 D;  4DV6 D;  1VIO A;  1JH3 A;  1HNX D;  4DV5 D; 
#chains in the Genus database with same CATH topology
 4X62 D;  3J7A F;  4JI2 D;  3OTO D;  3J80 E;  4NXN D;  1I94 D;  4OUD A;  5A2Q E;  4JI8 D;  2UU9 D;  4X66 D;  4X64 D;  4JI4 D;  4KHP D;  4LF6 D;  4OX9 D;  3DH3 A;  4YHH D;  4DR5 D;  4DR2 D;  1XMO D;  4LF8 D;  2NVU B;  2UXC D;  1Y8Q B;  4DV7 D;  1IBM D;  5LMU D;  4B3T D;  1J5E D;  2KTL A;  4II3 A;  3KBG A;  1N33 D;  1XNQ D;  2F4V D;  4YY3 D;  4DR7 D;  4B3S D;  4JI6 D;  1XNR D;  2UXB D;  1C05 A;  1P9K A;  4GKJ D;  1IBK D;  4JI1 D;  2HHH D;  4JYA D;  3KYD B;  4GKK D;  4II2 A;  2K6P A;  1C06 A;  3FN1 A;  2VQF D;  1XMQ D;  4NXM D;  1N32 D;  5BR8 D;  4DR4 D;  3T1Y D;  3ONH A;  4LF9 D;  2VQE D;  1KSK A;  1IBL D;  1DM9 A;  5IT9 E;  4B3M D;  4JV5 D;  4LFB D;  4DV0 D;  5FQ2 B;  4LGT A;  2L3N A;  4JI0 D;  3ONG A;  4X65 D;  1FJG D;  2ZM6 D;  4JI7 D;  4DR1 D;  2UUB D;  1HNZ D;  4NNJ A;  4LFA D;  3T1H D;  1N34 D;  5LL6 S;  3JAM E;  4W5V B;  5IWA D;  4K0K D;  3HP7 A;  5KNL A;  1HR0 D;  2IST A;  1KSL A;  1H3E A;  4DV3 D;  2E5L D;  2JAN A;  4JI5 D;  4DR6 D;  1HNW D;  1H3F A;  1Y8R B;  4JI3 D;  1Y8X B;  4DR3 D;  3CMM A;  2UUC D;  4LF7 D;  4DV1 D;  4DV2 D;  1FKA D;  3KYC B;  1N36 D;  4LFC D;  5FLX E;  2UXD D;  1KSV A;  4DUZ D;  2UUA D;  2ZTB A;  4DUY D;  3J81 E;  4LF5 D;  2I1S A;  5LMN D;  4AQY D;  4LF4 D;  4B3R D;  2LQ7 A;  4DV4 D;  4DV6 D;  1VIO A;  1JH3 A;  1HNX D;  4DV5 D; 
#chains in the Genus database with same CATH homology
 4X62 D;  4JI2 D;  3OTO D;  4NXN D;  1I94 D;  4OUD A;  4JI8 D;  2UU9 D;  4X66 D;  4X64 D;  4JI4 D;  4KHP D;  4LF6 D;  4OX9 D;  3DH3 A;  4YHH D;  4DR5 D;  4DR2 D;  1XMO D;  4LF8 D;  2UXC D;  4DV7 D;  1IBM D;  5LMU D;  4B3T D;  1J5E D;  2KTL A;  3KBG A;  1N33 D;  1XNQ D;  2F4V D;  4YY3 D;  4DR7 D;  4B3S D;  4JI6 D;  1XNR D;  2UXB D;  1C05 A;  1P9K A;  4GKJ D;  1IBK D;  4JI1 D;  2HHH D;  4JYA D;  4GKK D;  2K6P A;  1C06 A;  2VQF D;  1XMQ D;  4NXM D;  1N32 D;  5BR8 D;  4DR4 D;  3T1Y D;  4LF9 D;  2VQE D;  1KSK A;  1IBL D;  1DM9 A;  4B3M D;  4JV5 D;  4LFB D;  4DV0 D;  4LGT A;  2L3N A;  4JI0 D;  4X65 D;  1FJG D;  2ZM6 D;  4JI7 D;  4DR1 D;  2UUB D;  1HNZ D;  4LFA D;  3T1H D;  1N34 D;  5IWA D;  4K0K D;  3HP7 A;  1HR0 D;  2IST A;  1KSL A;  1H3E A;  4DV3 D;  2E5L D;  2JAN A;  4JI5 D;  4DR6 D;  1HNW D;  1H3F A;  4JI3 D;  4DR3 D;  2UUC D;  4LF7 D;  4DV1 D;  4DV2 D;  1FKA D;  1N36 D;  4LFC D;  2UXD D;  1KSV A;  4DUZ D;  2UUA D;  4DUY D;  4LF5 D;  5LMN D;  4AQY D;  4LF4 D;  4B3R D;  4DV4 D;  4DV6 D;  1VIO A;  1JH3 A;  1HNX D;  4DV5 D;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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2E5LD

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations