2I1S | Genus

Total Genus 46

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	46
sequence length	185
structure length	178
Chain Sequence	TFEKVYHLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQAVMDWEDYHLHEFEMVNPKTGMLDKIGAEGDPLVSEKKAKLSDYFTLENKEALYTYDFGDNWQVKVRLEKILPRKEGVEYPICTAGKRAAVPEDSGGVWGYEEMLEVLKDSEHEEYEDTVLWLGDDFDPEYFDPKDVSF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5cfd2aaf6da8b0c05fe45cb5/pdb.gz): 1388 ms

reading 178 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

178 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 25 ms

Adding embedded #jmolscript: select ({0:177});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Methanosarcina mazei
publication title	Crystal structure of hypothetical protein MM_3350 from Methanosarcina mazei Go1 rcsb
molecule keywords	Hypothetical protein
total genus	46
structure length	178
sequence length	185
chains with identical sequence	B
ec nomenclature
pdb deposition date	2006-08-14

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF07929	PRiA4_ORF3	Plasmid pRiA4b ORF-3-like protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.290.30	Alpha Beta	Roll	Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A	MM3350-like	2i1sA00

2I1SA
chains in the Genus database with same CATH superfamily

4LF9D 1FJGD 2UXDD 4YY3D 1C06A 4DR4D 4W5VB 4JI7D 1XMOD 4DR5D 4B3MD 4X62D 4LFBD 2KTLA 4JI8D 4DV6D 4B3RD 4LF6D 1Y8XB 1HNZD 1N36D 3T1YD 5LMND 4B3TD 1DM9A 5FLXE 5IWAD 5A2QE 4LF5D 1P9KA 4OX9D 1C05A 2UUCD 4JI2D 4DV4D 4LF8D 1H3FA 1N33D 4DV7D 4LF7D 4JV5D 2UXBD 5BR8D 1IBKD 1N34D 1IBMD 4JYAD 4LGTA 1XMQD 2K6PA 3J81E 2ZM6D 3FN1A 2F4VD 4JI1D 4JI5D 3ONHA 2HHHD 1HNXD 3J7AF 4DV3D 1I94D 4JI0D 4LFCD 4JI3D 4DV5D 5FQ2B 3HP7A 3ONGA 2ZTBA 4DUYD 2ISTA 2JANA 4DR1D 2NVUB 1XNRD 4II2A 4LFAD 4GKKD 3T1HD 1Y8QB 4DV1D 4GKJD 4X66D 4DR2D 4B3SD 2UUBD 4LF4D 4DR6D 5LMUD 1XNQD 4NNJA 4DV2D 2VQED 1IBLD 2I1SA 2UU9D 4DV0D 5IT9E 2VQFD 1KSLA 1Y8RB 3J80E 4K0KD 1JH3A 2LQ7A 4YHHD 4KHPD 4AQYD 4JI4D 3JAME 4DUZD 4DR3D 1VIOA 1KSKA 3KBGA 5LL6S 4DR7D 1H3EA 3OTOD 2UXCD 1N32D 2E5LD 4OUDA 1KSVA 3KYCB 4X65D 2UUAD 1J5ED 4JI6D 4NXMD 3CMMA 4X64D 3DH3A 4NXND 1HNWD 5KNLA 4II3A 1HR0D 1FKAD 3KYDB
chains in the Genus database with same CATH topology

2I1SA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2I1S A; 
#chains in the Genus database with same CATH topology
 4LF9 D;  1FJG D;  2UXD D;  4YY3 D;  1C06 A;  4DR4 D;  4W5V B;  4JI7 D;  1XMO D;  4DR5 D;  4B3M D;  4X62 D;  4LFB D;  2KTL A;  4JI8 D;  4DV6 D;  4B3R D;  4LF6 D;  1Y8X B;  1HNZ D;  1N36 D;  3T1Y D;  5LMN D;  4B3T D;  1DM9 A;  5FLX E;  5IWA D;  5A2Q E;  4LF5 D;  1P9K A;  4OX9 D;  1C05 A;  2UUC D;  4JI2 D;  4DV4 D;  4LF8 D;  1H3F A;  1N33 D;  4DV7 D;  4LF7 D;  4JV5 D;  2UXB D;  5BR8 D;  1IBK D;  1N34 D;  1IBM D;  4JYA D;  4LGT A;  1XMQ D;  2K6P A;  3J81 E;  2ZM6 D;  3FN1 A;  2F4V D;  4JI1 D;  4JI5 D;  3ONH A;  2HHH D;  1HNX D;  3J7A F;  4DV3 D;  1I94 D;  4JI0 D;  4LFC D;  4JI3 D;  4DV5 D;  5FQ2 B;  3HP7 A;  3ONG A;  2ZTB A;  4DUY D;  2IST A;  2JAN A;  4DR1 D;  2NVU B;  1XNR D;  4II2 A;  4LFA D;  4GKK D;  3T1H D;  1Y8Q B;  4DV1 D;  4GKJ D;  4X66 D;  4DR2 D;  4B3S D;  2UUB D;  4LF4 D;  4DR6 D;  5LMU D;  1XNQ D;  4NNJ A;  4DV2 D;  2VQE D;  1IBL D;  2I1S A;  2UU9 D;  4DV0 D;  5IT9 E;  2VQF D;  1KSL A;  1Y8R B;  3J80 E;  4K0K D;  1JH3 A;  2LQ7 A;  4YHH D;  4KHP D;  4AQY D;  4JI4 D;  3JAM E;  4DUZ D;  4DR3 D;  1VIO A;  1KSK A;  3KBG A;  5LL6 S;  4DR7 D;  1H3E A;  3OTO D;  2UXC D;  1N32 D;  2E5L D;  4OUD A;  1KSV A;  3KYC B;  4X65 D;  2UUA D;  1J5E D;  4JI6 D;  4NXM D;  3CMM A;  4X64 D;  3DH3 A;  4NXN D;  1HNW D;  5KNL A;  4II3 A;  1HR0 D;  1FKA D;  3KYD B; 
#chains in the Genus database with same CATH homology
 2I1S A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2I1SA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations