The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
28
|
sequence length |
114
|
structure length |
114
|
Chain Sequence |
SKVCRGVIKLSSDCLNKMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDEEGDTMIRKAIELFLDVDDELPCNTCSLPDVEVPLIKA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of UBA2(ufd)-Ubc9: insights into E1-E2 interactions in Sumo pathways.
pubmed doi rcsb |
| molecule tags |
Ligase
|
| source organism |
Saccharomyces cerevisiae
|
| molecule keywords |
Ubiquitin-activating enzyme E1-like
|
| total genus |
28
|
| structure length |
114
|
| sequence length |
114
|
| chains with identical sequence |
C
|
| ec nomenclature | |
| pdb deposition date | 2010-08-28 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Roll | Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A | Ubiquitin-like 2 activating enzyme e1b. Chain: B, domain 3 |
#chains in the Genus database with same CATH superfamily 3ONG A; 1Y8R B; 5FQ2 B; 3FN1 A; 3ONH A; 2NVU B; 1Y8Q B; 3KYC B; 4W5V B; 2LQ7 A; 1Y8X B; 3KYD B; #chains in the Genus database with same CATH topology 1XNQ D; 4JI5 D; 4DR2 D; 2UUA D; 4LF7 D; 4W5V B; 4YY3 D; 2JAN A; 4DV0 D; 4LF9 D; 4DV2 D; 1HNW D; 4DV7 D; 4JI1 D; 4B3S D; 1P9K A; 3T1Y D; 4DR5 D; 1HR0 D; 3T1H D; 3OTO D; 1N32 D; 2UUC D; 1N33 D; 4JI6 D; 1KSV A; 4JYA D; 4LGT A; 3J7A F; 4JI0 D; 3ONG A; 2IST A; 2E5L D; 4DR3 D; 1IBL D; 4X66 D; 1XMQ D; 2UUB D; 4X64 D; 4DV3 D; 1I94 D; 4JI4 D; 4LF4 D; 5A2Q E; 4DR7 D; 1C05 A; 5BR8 D; 4LFC D; 1JH3 A; 4DV4 D; 2I1S A; 1XNR D; 4X65 D; 2UXC D; 2LQ7 A; 3KBG A; 4LF5 D; 4NXM D; 4LF8 D; 5LMU D; 4DV6 D; 4DUZ D; 4NXN D; 1Y8X B; 4JI7 D; 1C06 A; 5IWA D; 4GKJ D; 4DUY D; 2ZTB A; 4OX9 D; 4DR4 D; 1KSL A; 1Y8R B; 2K6P A; 5FQ2 B; 5LL6 S; 1HNX D; 2NVU B; 2HHH D; 4B3M D; 2VQE D; 4GKK D; 4DR6 D; 3HP7 A; 1DM9 A; 1FJG D; 3CMM A; 4NNJ A; 1IBK D; 3KYD B; 3JAM E; 1KSK A; 1J5E D; 1FKA D; 4JI8 D; 2KTL A; 2F4V D; 4JI3 D; 4LF6 D; 4DV5 D; 2UXD D; 1Y8Q B; 4II2 A; 4YHH D; 4LFA D; 4B3R D; 4II3 A; 2UXB D; 1N36 D; 3ONH A; 4DR1 D; 1N34 D; 2VQF D; 5KNL A; 4LFB D; 1H3E A; 2UU9 D; 3DH3 A; 3FN1 A; 5IT9 E; 4JI2 D; 1VIO A; 4KHP D; 3KYC B; 3J80 E; 1IBM D; 3J81 E; 4AQY D; 5LMN D; 5FLX E; 2ZM6 D; 1HNZ D; 4X62 D; 1XMO D; 4B3T D; 4DV1 D; 1H3F A; 4OUD A; 4K0K D; 4JV5 D; #chains in the Genus database with same CATH homology 3ONG A; 1Y8R B; 5FQ2 B; 3FN1 A; 3ONH A; 2NVU B; 1Y8Q B; 3KYC B; 4W5V B; 2LQ7 A; 1Y8X B; 3KYD B;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
