3ONHA

Crystal structure of uba2ufd-ubc9: insights into e1-e2 interactions in sumo pathways
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
113
structure length
113
Chain Sequence
KVCRGVIKLSSDCLNKMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDEEGDTMIRKAIELFLDVDDELPCNTCSLPDVEVPLIKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
molecule tags Ligase
source organism Saccharomyces cerevisiae
publication title Crystal structure of UBA2(ufd)-Ubc9: insights into E1-E2 interactions in Sumo pathways.
pubmed doi rcsb
molecule keywords Ubiquitin-activating enzyme E1-like
total genus 32
structure length 113
sequence length 113
ec nomenclature
pdb deposition date 2010-08-28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.290.20 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A Ubiquitin-like 2 activating enzyme e1b. Chain: B, domain 3 3onhA01
3ONHA 1Y8XB 2LQ7A 1Y8RB 3FN1A 3KYDB 3ONGA 4W5VB 5FQ2B 2NVUB 3KYCB 1Y8QB
chains in the Genus database with same CATH superfamily
1H3FA 4B3TD 1P9KA 4X64D 4DV7D 4DUYD 1HNXD 2F4VD 1FJGD 1HNWD 1N33D 2VQED 4DV0D 1I94D 2JANA 3OTOD 2I1SA 3HP7A 1HR0D 4X65D 4GKJD 4DV2D 2UXBD 3ONHA 2KTLA 5IWAD 4JI7D 4NNJA 4JI4D 4JI2D 5A2QE 4LGTA 1FKAD 4LFCD 1H3EA 5BR8D 4X62D 4LF7D 4LF5D 4LF8D 4DR5D 1XNRD 5LMND 4DV3D 3J80E 4JI5D 1Y8RB 1IBLD 4DR7D 1KSKA 2K6PA 2UXCD 4LFAD 1XMOD 4GKKD 1N32D 2UUAD 3CMMA 3T1HD 2ZTBA 5LL6S 4B3RD 3KYCB 2E5LD 3KBGA 3DH3A 1N34D 4JV5D 1Y8XB 2LQ7A 3J81E 1IBKD 5LMUD 5FLXE 1N36D 2UU9D 3JAME 4JI3D 4DR4D 1C05A 3T1YD 4B3MD 5FQ2B 4W5VB 1IBMD 4LF6D 4YY3D 4JI8D 4DV1D 4NXMD 4OX9D 4OUDA 5IT9E 4X66D 4JI1D 1XNQD 3KYDB 4DR3D 1XMQD 4YHHD 4LFBD 2UXDD 4DR1D 1KSLA 4DR6D 4KHPD 4DUZD 5KNLA 4LF9D 3FN1A 4JI6D 4AQYD 4DV6D 2ISTA 4JYAD 4DR2D 4II3A 4NXND 4LF4D 1VIOA 1JH3A 4DV4D 1HNZD 4JI0D 1C06A 2NVUB 1KSVA 1Y8QB 4DV5D 4B3SD 3J7AF 2UUBD 1DM9A 2ZM6D 2UUCD 4K0KD 2VQFD 3ONGA 1J5ED 4II2A 2HHHD
chains in the Genus database with same CATH topology
3ONHA 1Y8XB 2LQ7A 1Y8RB 3FN1A 3KYDB 3ONGA 4W5VB 5FQ2B 2NVUB 3KYCB 1Y8QB
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3ONH A;  1Y8X B;  2LQ7 A;  1Y8R B;  3FN1 A;  3KYD B;  3ONG A;  4W5V B;  5FQ2 B;  2NVU B;  3KYC B;  1Y8Q B; 
#chains in the Genus database with same CATH topology
 1H3F A;  4B3T D;  1P9K A;  4X64 D;  4DV7 D;  4DUY D;  1HNX D;  2F4V D;  1FJG D;  1HNW D;  1N33 D;  2VQE D;  4DV0 D;  1I94 D;  2JAN A;  3OTO D;  2I1S A;  3HP7 A;  1HR0 D;  4X65 D;  4GKJ D;  4DV2 D;  2UXB D;  3ONH A;  2KTL A;  5IWA D;  4JI7 D;  4NNJ A;  4JI4 D;  4JI2 D;  5A2Q E;  4LGT A;  1FKA D;  4LFC D;  1H3E A;  5BR8 D;  4X62 D;  4LF7 D;  4LF5 D;  4LF8 D;  4DR5 D;  1XNR D;  5LMN D;  4DV3 D;  3J80 E;  4JI5 D;  1Y8R B;  1IBL D;  4DR7 D;  1KSK A;  2K6P A;  2UXC D;  4LFA D;  1XMO D;  4GKK D;  1N32 D;  2UUA D;  3CMM A;  3T1H D;  2ZTB A;  5LL6 S;  4B3R D;  3KYC B;  2E5L D;  3KBG A;  3DH3 A;  1N34 D;  4JV5 D;  1Y8X B;  2LQ7 A;  3J81 E;  1IBK D;  5LMU D;  5FLX E;  1N36 D;  2UU9 D;  3JAM E;  4JI3 D;  4DR4 D;  1C05 A;  3T1Y D;  4B3M D;  5FQ2 B;  4W5V B;  1IBM D;  4LF6 D;  4YY3 D;  4JI8 D;  4DV1 D;  4NXM D;  4OX9 D;  4OUD A;  5IT9 E;  4X66 D;  4JI1 D;  1XNQ D;  3KYD B;  4DR3 D;  1XMQ D;  4YHH D;  4LFB D;  2UXD D;  4DR1 D;  1KSL A;  4DR6 D;  4KHP D;  4DUZ D;  5KNL A;  4LF9 D;  3FN1 A;  4JI6 D;  4AQY D;  4DV6 D;  2IST A;  4JYA D;  4DR2 D;  4II3 A;  4NXN D;  4LF4 D;  1VIO A;  1JH3 A;  4DV4 D;  1HNZ D;  4JI0 D;  1C06 A;  2NVU B;  1KSV A;  1Y8Q B;  4DV5 D;  4B3S D;  3J7A F;  2UUB D;  1DM9 A;  2ZM6 D;  2UUC D;  4K0K D;  2VQF D;  3ONG A;  1J5E D;  4II2 A;  2HHH D; 
#chains in the Genus database with same CATH homology
 3ONH A;  1Y8X B;  2LQ7 A;  1Y8R B;  3FN1 A;  3KYD B;  3ONG A;  4W5V B;  5FQ2 B;  2NVU B;  3KYC B;  1Y8Q B;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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