4DR3 | Genus

Total Genus 57

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	57
sequence length	208
structure length	208
Chain Sequence	GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQLVIEFYSR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 208 atoms

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208 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ribosome/antibiotic
publication title	A structural basis for streptomycin-induced misreading of the genetic code. pubmed doi rcsb
molecule keywords	16S rRNA
total genus	57
structure length	208
sequence length	208
ec nomenclature
pdb deposition date	2012-02-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
D	PF00163	Ribosomal_S4	Ribosomal protein S4/S9 N-terminal domain
D	PF01479	S4	S4 domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1050.10	Mainly Alpha	Orthogonal Bundle	Ribosomal Protein S4 Delta 41; Chain A, domain 1	Ribosomal Protein S4 Delta 41; Chain A, domain 1	4dr3D01
3.10.290.10	Alpha Beta	Roll	Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A	RNA-binding S4 domain	4dr3D02

4AQYD 5BR8D 4DV0D 4JI4D 2K6PA 4DR5D 4LGTA 2HHHD 4LF5D 3T1YD 4DR1D 4JI7D 1KSLA 4LF9D 4DV5D 2UXCD 2UUCD 4JI2D 4K0KD 4DV3D 1VIOA 4DUYD 4JI1D 4B3SD 1KSKA 1I94D 4DV7D 1H3FA 5LMND 1XMQD 4DUZD 1C05A 2KTLA 4JYAD 1HNWD 2ZM6D 1N33D 4X65D 1XMOD 1XNQD 1JH3A 4X62D 2ISTA 4DR2D 4X66D 2UXBD 2JANA 4DV4D 4JI3D 4DR6D 2VQED 4LFAD 3HP7A 4DR4D 2VQFD 4JI0D 3T1HD 4OUDA 4DV6D 4LFCD 4DR7D 4GKJD 5IWAD 1J5ED 2E5LD 3OTOD 1IBMD 2F4VD 4LF6D 4NXND 1FJGD 4JV5D 4JI6D 4LFBD 1N36D 4JI8D 1KSVA 1IBKD 5LMUD 1DM9A 2UUBD 1XNRD 4GKKD 4LF8D 4DR3D 1HNZD 4JI5D 4DV2D 1H3EA 1N32D 3DH3A 3KBGA 4LF7D 4NXMD 1FKAD 4LF4D 2UXDD 4X64D 4B3TD 4DV1D 1HNXD 4YY3D 1IBLD 2UUAD 2UU9D 4B3MD 4B3RD 1N34D 4YHHD 1HR0D 4KHPD 1C06A 1P9KA 4OX9D
chains in the Genus database with same CATH superfamily

4AQYD 5BR8D 4DV0D 4JI4D 2L3NA 3J80E 2K6PA 4II2A 3ONHA 2LQ7A 4DR5D 4LGTA 2HHHD 4LF5D 3T1YD 4DR1D 4JI7D 1KSLA 4LF9D 5A2QE 2NVUB 4DV5D 2UXCD 2UUCD 4JI2D 4K0KD 4DV3D 1VIOA 4DUYD 4JI1D 4B3SD 1KSKA 1I94D 4DV7D 1Y8QB 3FN1A 1H3FA 5LMND 1XMQD 4DUZD 1C05A 2KTLA 4JYAD 1HNWD 3ONGA 2ZM6D 1N33D 4X65D 1XMOD 1XNQD 1JH3A 4X62D 4W5VB 2ISTA 4DR2D 4X66D 2UXBD 2JANA 4DV4D 4JI3D 4DR6D 5FQ2B 2VQED 4LFAD 3HP7A 3KYCB 4DR4D 2VQFD 4JI0D 3T1HD 4OUDA 4DV6D 4LFCD 4DR7D 4GKJD 5IWAD 1J5ED 2E5LD 3OTOD 3J81E 1Y8XB 1IBMD 2F4VD 4LF6D 4NXND 1FJGD 4II3A 1Y8RB 4JV5D 5IT9E 4JI6D 4LFBD 1N36D 4JI8D 1KSVA 1IBKD 5LMUD 1DM9A 2UUBD 1XNRD 5KNLA 4GKKD 4LF8D 4DR3D 1HNZD 4JI5D 4DV2D 1H3EA 1N32D 3DH3A 3KBGA 5LL6S 3KYDB 4NNJA 4LF7D 4NXMD 1FKAD 4LF4D 2UXDD 3JAME 5FLXE 4X64D 4B3TD 4DV1D 3CMMA 2I1SA 1HNXD 4YY3D 1IBLD 2UUAD 3J7AF 2UU9D 4B3MD 4B3RD 1N34D 4YHHD 1HR0D 4KHPD 2ZTBA 1C06A 1P9KA 4OX9D
chains in the Genus database with same CATH topology

4AQYD 5BR8D 4DV0D 4JI4D 2L3NA 2K6PA 4DR5D 4LGTA 2HHHD 4LF5D 3T1YD 4DR1D 4JI7D 1KSLA 4LF9D 4DV5D 2UXCD 2UUCD 4JI2D 4K0KD 4DV3D 1VIOA 4DUYD 4JI1D 4B3SD 1KSKA 1I94D 4DV7D 1H3FA 5LMND 1XMQD 4DUZD 1C05A 2KTLA 4JYAD 1HNWD 2ZM6D 1N33D 4X65D 1XMOD 1XNQD 1JH3A 4X62D 2ISTA 4DR2D 4X66D 2UXBD 2JANA 4DV4D 4JI3D 4DR6D 2VQED 4LFAD 3HP7A 4DR4D 2VQFD 4JI0D 3T1HD 4OUDA 4DV6D 4LFCD 4DR7D 4GKJD 5IWAD 1J5ED 2E5LD 3OTOD 1IBMD 2F4VD 4LF6D 4NXND 1FJGD 4JV5D 4JI6D 4LFBD 1N36D 4JI8D 1KSVA 1IBKD 5LMUD 1DM9A 2UUBD 1XNRD 4GKKD 4LF8D 4DR3D 1HNZD 4JI5D 4DV2D 1H3EA 1N32D 3DH3A 3KBGA 4LF7D 4NXMD 1FKAD 4LF4D 2UXDD 4X64D 4B3TD 4DV1D 1HNXD 4YY3D 1IBLD 2UUAD 2UU9D 4B3MD 4B3RD 1N34D 4YHHD 1HR0D 4KHPD 1C06A 1P9KA 4OX9D
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4AQY D;  5BR8 D;  4DV0 D;  4JI4 D;  2K6P A;  4DR5 D;  4LGT A;  2HHH D;  4LF5 D;  3T1Y D;  4DR1 D;  4JI7 D;  1KSL A;  4LF9 D;  4DV5 D;  2UXC D;  2UUC D;  4JI2 D;  4K0K D;  4DV3 D;  1VIO A;  4DUY D;  4JI1 D;  4B3S D;  1KSK A;  1I94 D;  4DV7 D;  1H3F A;  5LMN D;  1XMQ D;  4DUZ D;  1C05 A;  2KTL A;  4JYA D;  1HNW D;  2ZM6 D;  1N33 D;  4X65 D;  1XMO D;  1XNQ D;  1JH3 A;  4X62 D;  2IST A;  4DR2 D;  4X66 D;  2UXB D;  2JAN A;  4DV4 D;  4JI3 D;  4DR6 D;  2VQE D;  4LFA D;  3HP7 A;  4DR4 D;  2VQF D;  4JI0 D;  3T1H D;  4OUD A;  4DV6 D;  4LFC D;  4DR7 D;  4GKJ D;  5IWA D;  1J5E D;  2E5L D;  3OTO D;  1IBM D;  2F4V D;  4LF6 D;  4NXN D;  1FJG D;  4JV5 D;  4JI6 D;  4LFB D;  1N36 D;  4JI8 D;  1KSV A;  1IBK D;  5LMU D;  1DM9 A;  2UUB D;  1XNR D;  4GKK D;  4LF8 D;  4DR3 D;  1HNZ D;  4JI5 D;  4DV2 D;  1H3E A;  1N32 D;  3DH3 A;  3KBG A;  4LF7 D;  4NXM D;  1FKA D;  4LF4 D;  2UXD D;  4X64 D;  4B3T D;  4DV1 D;  1HNX D;  4YY3 D;  1IBL D;  2UUA D;  2UU9 D;  4B3M D;  4B3R D;  1N34 D;  4YHH D;  1HR0 D;  4KHP D;  1C06 A;  1P9K A;  4OX9 D; 
#chains in the Genus database with same CATH topology
 4AQY D;  5BR8 D;  4DV0 D;  4JI4 D;  2L3N A;  3J80 E;  2K6P A;  4II2 A;  3ONH A;  2LQ7 A;  4DR5 D;  4LGT A;  2HHH D;  4LF5 D;  3T1Y D;  4DR1 D;  4JI7 D;  1KSL A;  4LF9 D;  5A2Q E;  2NVU B;  4DV5 D;  2UXC D;  2UUC D;  4JI2 D;  4K0K D;  4DV3 D;  1VIO A;  4DUY D;  4JI1 D;  4B3S D;  1KSK A;  1I94 D;  4DV7 D;  1Y8Q B;  3FN1 A;  1H3F A;  5LMN D;  1XMQ D;  4DUZ D;  1C05 A;  2KTL A;  4JYA D;  1HNW D;  3ONG A;  2ZM6 D;  1N33 D;  4X65 D;  1XMO D;  1XNQ D;  1JH3 A;  4X62 D;  4W5V B;  2IST A;  4DR2 D;  4X66 D;  2UXB D;  2JAN A;  4DV4 D;  4JI3 D;  4DR6 D;  5FQ2 B;  2VQE D;  4LFA D;  3HP7 A;  3KYC B;  4DR4 D;  2VQF D;  4JI0 D;  3T1H D;  4OUD A;  4DV6 D;  4LFC D;  4DR7 D;  4GKJ D;  5IWA D;  1J5E D;  2E5L D;  3OTO D;  3J81 E;  1Y8X B;  1IBM D;  2F4V D;  4LF6 D;  4NXN D;  1FJG D;  4II3 A;  1Y8R B;  4JV5 D;  5IT9 E;  4JI6 D;  4LFB D;  1N36 D;  4JI8 D;  1KSV A;  1IBK D;  5LMU D;  1DM9 A;  2UUB D;  1XNR D;  5KNL A;  4GKK D;  4LF8 D;  4DR3 D;  1HNZ D;  4JI5 D;  4DV2 D;  1H3E A;  1N32 D;  3DH3 A;  3KBG A;  5LL6 S;  3KYD B;  4NNJ A;  4LF7 D;  4NXM D;  1FKA D;  4LF4 D;  2UXD D;  3JAM E;  5FLX E;  4X64 D;  4B3T D;  4DV1 D;  3CMM A;  2I1S A;  1HNX D;  4YY3 D;  1IBL D;  2UUA D;  3J7A F;  2UU9 D;  4B3M D;  4B3R D;  1N34 D;  4YHH D;  1HR0 D;  4KHP D;  2ZTB A;  1C06 A;  1P9K A;  4OX9 D; 
#chains in the Genus database with same CATH homology
 4AQY D;  5BR8 D;  4DV0 D;  4JI4 D;  2L3N A;  2K6P A;  4DR5 D;  4LGT A;  2HHH D;  4LF5 D;  3T1Y D;  4DR1 D;  4JI7 D;  1KSL A;  4LF9 D;  4DV5 D;  2UXC D;  2UUC D;  4JI2 D;  4K0K D;  4DV3 D;  1VIO A;  4DUY D;  4JI1 D;  4B3S D;  1KSK A;  1I94 D;  4DV7 D;  1H3F A;  5LMN D;  1XMQ D;  4DUZ D;  1C05 A;  2KTL A;  4JYA D;  1HNW D;  2ZM6 D;  1N33 D;  4X65 D;  1XMO D;  1XNQ D;  1JH3 A;  4X62 D;  2IST A;  4DR2 D;  4X66 D;  2UXB D;  2JAN A;  4DV4 D;  4JI3 D;  4DR6 D;  2VQE D;  4LFA D;  3HP7 A;  4DR4 D;  2VQF D;  4JI0 D;  3T1H D;  4OUD A;  4DV6 D;  4LFC D;  4DR7 D;  4GKJ D;  5IWA D;  1J5E D;  2E5L D;  3OTO D;  1IBM D;  2F4V D;  4LF6 D;  4NXN D;  1FJG D;  4JV5 D;  4JI6 D;  4LFB D;  1N36 D;  4JI8 D;  1KSV A;  1IBK D;  5LMU D;  1DM9 A;  2UUB D;  1XNR D;  4GKK D;  4LF8 D;  4DR3 D;  1HNZ D;  4JI5 D;  4DV2 D;  1H3E A;  1N32 D;  3DH3 A;  3KBG A;  4LF7 D;  4NXM D;  1FKA D;  4LF4 D;  2UXD D;  4X64 D;  4B3T D;  4DV1 D;  1HNX D;  4YY3 D;  1IBL D;  2UUA D;  2UU9 D;  4B3M D;  4B3R D;  1N34 D;  4YHH D;  1HR0 D;  4KHP D;  1C06 A;  1P9K A;  4OX9 D;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4DR3D

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations