4DUY | Genus

Total Genus 58

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	58
sequence length	208
structure length	208
Chain Sequence	GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQLVIEFYSR

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ribosome
publication title	A structural basis for streptomycin resistance rcsb
molecule keywords	16S rRNA
total genus	58
structure length	208
sequence length	208
ec nomenclature
pdb deposition date	2012-02-22

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
D	PF00163	Ribosomal_S4	Ribosomal protein S4/S9 N-terminal domain
D	PF01479	S4	S4 domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1050.10	Mainly Alpha	Orthogonal Bundle	Ribosomal Protein S4 Delta 41; Chain A, domain 1	Ribosomal Protein S4 Delta 41; Chain A, domain 1	4duyD01
3.10.290.10	Alpha Beta	Roll	Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A	RNA-binding S4 domain	4duyD02

4B3TD 1H3FA 1P9KA 4X64D 4DV7D 4DUYD 1HNXD 2F4VD 1HNWD 1N33D 2VQED 4DV0D 1I94D 2JANA 3OTOD 1HR0D 3HP7A 4X65D 4GKJD 4DV2D 2UXBD 5IWAD 2KTLA 4JI7D 4JI4D 4JI2D 4LGTA 1FKAD 4LFCD 1H3EA 5BR8D 4X62D 4LF7D 4LF5D 4LF8D 4DR5D 1XNRD 5LMND 4DV3D 4JI5D 1IBLD 4DR7D 1KSKA 2K6PA 2UXCD 4LFAD 1XMOD 4GKKD 1N32D 2UUAD 3T1HD 4B3RD 2E5LD 1N34D 3KBGA 4JV5D 3DH3A 1IBKD 5LMUD 1N36D 2UU9D 4JI3D 4DR4D 1C05A 3T1YD 4B3MD 4LF6D 1IBMD 4YY3D 4JI8D 4DV1D 4NXMD 4OX9D 4OUDA 4X66D 4JI1D 1XNQD 4DR3D 1XMQD 4YHHD 4LFBD 2UXDD 4DR1D 1KSLA 4DR6D 4KHPD 4DUZD 4LF9D 4JI6D 4AQYD 4DV6D 4JYAD 2ISTA 4DR2D 4NXND 4LF4D 1VIOA 1JH3A 4DV4D 1HNZD 4JI0D 1C06A 1KSVA 4DV5D 4B3SD 2UUBD 1DM9A 2ZM6D 2UUCD 4K0KD 2VQFD 1J5ED 1FJGD 2HHHD
chains in the Genus database with same CATH superfamily

4B3TD 1H3FA 1P9KA 4X64D 4DV7D 4DUYD 1HNXD 2L3NA 2F4VD 1HNWD 1N33D 2VQED 4DV0D 1I94D 2JANA 3OTOD 1HR0D 2I1SA 3HP7A 4X65D 4GKJD 4DV2D 2UXBD 3ONHA 5IWAD 2KTLA 4JI7D 4NNJA 4JI4D 4JI2D 5A2QE 4LGTA 1FKAD 4LFCD 1H3EA 5BR8D 4X62D 4LF7D 4LF5D 4LF8D 4DR5D 1XNRD 5LMND 4DV3D 4JI5D 3J80E 1Y8RB 1IBLD 4DR7D 1KSKA 2K6PA 2UXCD 4LFAD 1XMOD 4GKKD 1N32D 2UUAD 3CMMA 3T1HD 2ZTBA 5LL6S 4B3RD 3KYCB 2E5LD 1N34D 3KBGA 4JV5D 3DH3A 1Y8XB 2LQ7A 3J81E 1IBKD 5LMUD 5FLXE 1N36D 2UU9D 4JI3D 3JAME 4DR4D 1C05A 3T1YD 4B3MD 4LF6D 4W5VB 1IBMD 5FQ2B 4YY3D 4II2A 4JI8D 4DV1D 4NXMD 4OX9D 4OUDA 5IT9E 4X66D 4JI1D 1XNQD 3KYDB 4DR3D 1XMQD 4YHHD 4LFBD 2UXDD 4DR1D 1KSLA 4DR6D 4KHPD 4DUZD 5KNLA 4LF9D 3FN1A 4JI6D 4AQYD 4DV6D 4JYAD 2ISTA 4DR2D 4NXND 4II3A 4LF4D 1VIOA 1JH3A 4DV4D 1HNZD 4JI0D 1C06A 2NVUB 1KSVA 1Y8QB 4DV5D 4B3SD 3J7AF 2UUBD 1DM9A 2ZM6D 2UUCD 4K0KD 2VQFD 3ONGA 1J5ED 1FJGD 2HHHD
chains in the Genus database with same CATH topology

4B3TD 1H3FA 1P9KA 4X64D 4DV7D 4DUYD 1HNXD 2L3NA 2F4VD 1HNWD 1N33D 2VQED 4DV0D 1I94D 2JANA 3OTOD 1HR0D 3HP7A 4X65D 4GKJD 4DV2D 2UXBD 5IWAD 2KTLA 4JI7D 4JI4D 4JI2D 4LGTA 1FKAD 4LFCD 1H3EA 5BR8D 4X62D 4LF7D 4LF5D 4LF8D 4DR5D 1XNRD 5LMND 4DV3D 4JI5D 1IBLD 4DR7D 1KSKA 2K6PA 2UXCD 4LFAD 1XMOD 4GKKD 1N32D 2UUAD 3T1HD 4B3RD 2E5LD 1N34D 3KBGA 4JV5D 3DH3A 1IBKD 5LMUD 1N36D 2UU9D 4JI3D 4DR4D 1C05A 3T1YD 4B3MD 4LF6D 1IBMD 4YY3D 4JI8D 4DV1D 4NXMD 4OX9D 4OUDA 4X66D 4JI1D 1XNQD 4DR3D 1XMQD 4YHHD 4LFBD 2UXDD 4DR1D 1KSLA 4DR6D 4KHPD 4DUZD 4LF9D 4JI6D 4AQYD 4DV6D 4JYAD 2ISTA 4DR2D 4NXND 4LF4D 1VIOA 1JH3A 4DV4D 1HNZD 4JI0D 1C06A 1KSVA 4DV5D 4B3SD 2UUBD 1DM9A 2ZM6D 2UUCD 4K0KD 2VQFD 1J5ED 1FJGD 2HHHD
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4B3T D;  1H3F A;  1P9K A;  4X64 D;  4DV7 D;  4DUY D;  1HNX D;  2F4V D;  1HNW D;  1N33 D;  2VQE D;  4DV0 D;  1I94 D;  2JAN A;  3OTO D;  1HR0 D;  3HP7 A;  4X65 D;  4GKJ D;  4DV2 D;  2UXB D;  5IWA D;  2KTL A;  4JI7 D;  4JI4 D;  4JI2 D;  4LGT A;  1FKA D;  4LFC D;  1H3E A;  5BR8 D;  4X62 D;  4LF7 D;  4LF5 D;  4LF8 D;  4DR5 D;  1XNR D;  5LMN D;  4DV3 D;  4JI5 D;  1IBL D;  4DR7 D;  1KSK A;  2K6P A;  2UXC D;  4LFA D;  1XMO D;  4GKK D;  1N32 D;  2UUA D;  3T1H D;  4B3R D;  2E5L D;  1N34 D;  3KBG A;  4JV5 D;  3DH3 A;  1IBK D;  5LMU D;  1N36 D;  2UU9 D;  4JI3 D;  4DR4 D;  1C05 A;  3T1Y D;  4B3M D;  4LF6 D;  1IBM D;  4YY3 D;  4JI8 D;  4DV1 D;  4NXM D;  4OX9 D;  4OUD A;  4X66 D;  4JI1 D;  1XNQ D;  4DR3 D;  1XMQ D;  4YHH D;  4LFB D;  2UXD D;  4DR1 D;  1KSL A;  4DR6 D;  4KHP D;  4DUZ D;  4LF9 D;  4JI6 D;  4AQY D;  4DV6 D;  4JYA D;  2IST A;  4DR2 D;  4NXN D;  4LF4 D;  1VIO A;  1JH3 A;  4DV4 D;  1HNZ D;  4JI0 D;  1C06 A;  1KSV A;  4DV5 D;  4B3S D;  2UUB D;  1DM9 A;  2ZM6 D;  2UUC D;  4K0K D;  2VQF D;  1J5E D;  1FJG D;  2HHH D; 
#chains in the Genus database with same CATH topology
 4B3T D;  1H3F A;  1P9K A;  4X64 D;  4DV7 D;  4DUY D;  1HNX D;  2L3N A;  2F4V D;  1HNW D;  1N33 D;  2VQE D;  4DV0 D;  1I94 D;  2JAN A;  3OTO D;  1HR0 D;  2I1S A;  3HP7 A;  4X65 D;  4GKJ D;  4DV2 D;  2UXB D;  3ONH A;  5IWA D;  2KTL A;  4JI7 D;  4NNJ A;  4JI4 D;  4JI2 D;  5A2Q E;  4LGT A;  1FKA D;  4LFC D;  1H3E A;  5BR8 D;  4X62 D;  4LF7 D;  4LF5 D;  4LF8 D;  4DR5 D;  1XNR D;  5LMN D;  4DV3 D;  4JI5 D;  3J80 E;  1Y8R B;  1IBL D;  4DR7 D;  1KSK A;  2K6P A;  2UXC D;  4LFA D;  1XMO D;  4GKK D;  1N32 D;  2UUA D;  3CMM A;  3T1H D;  2ZTB A;  5LL6 S;  4B3R D;  3KYC B;  2E5L D;  1N34 D;  3KBG A;  4JV5 D;  3DH3 A;  1Y8X B;  2LQ7 A;  3J81 E;  1IBK D;  5LMU D;  5FLX E;  1N36 D;  2UU9 D;  4JI3 D;  3JAM E;  4DR4 D;  1C05 A;  3T1Y D;  4B3M D;  4LF6 D;  4W5V B;  1IBM D;  5FQ2 B;  4YY3 D;  4II2 A;  4JI8 D;  4DV1 D;  4NXM D;  4OX9 D;  4OUD A;  5IT9 E;  4X66 D;  4JI1 D;  1XNQ D;  3KYD B;  4DR3 D;  1XMQ D;  4YHH D;  4LFB D;  2UXD D;  4DR1 D;  1KSL A;  4DR6 D;  4KHP D;  4DUZ D;  5KNL A;  4LF9 D;  3FN1 A;  4JI6 D;  4AQY D;  4DV6 D;  4JYA D;  2IST A;  4DR2 D;  4NXN D;  4II3 A;  4LF4 D;  1VIO A;  1JH3 A;  4DV4 D;  1HNZ D;  4JI0 D;  1C06 A;  2NVU B;  1KSV A;  1Y8Q B;  4DV5 D;  4B3S D;  3J7A F;  2UUB D;  1DM9 A;  2ZM6 D;  2UUC D;  4K0K D;  2VQF D;  3ONG A;  1J5E D;  1FJG D;  2HHH D; 
#chains in the Genus database with same CATH homology
 4B3T D;  1H3F A;  1P9K A;  4X64 D;  4DV7 D;  4DUY D;  1HNX D;  2L3N A;  2F4V D;  1HNW D;  1N33 D;  2VQE D;  4DV0 D;  1I94 D;  2JAN A;  3OTO D;  1HR0 D;  3HP7 A;  4X65 D;  4GKJ D;  4DV2 D;  2UXB D;  5IWA D;  2KTL A;  4JI7 D;  4JI4 D;  4JI2 D;  4LGT A;  1FKA D;  4LFC D;  1H3E A;  5BR8 D;  4X62 D;  4LF7 D;  4LF5 D;  4LF8 D;  4DR5 D;  1XNR D;  5LMN D;  4DV3 D;  4JI5 D;  1IBL D;  4DR7 D;  1KSK A;  2K6P A;  2UXC D;  4LFA D;  1XMO D;  4GKK D;  1N32 D;  2UUA D;  3T1H D;  4B3R D;  2E5L D;  1N34 D;  3KBG A;  4JV5 D;  3DH3 A;  1IBK D;  5LMU D;  1N36 D;  2UU9 D;  4JI3 D;  4DR4 D;  1C05 A;  3T1Y D;  4B3M D;  4LF6 D;  1IBM D;  4YY3 D;  4JI8 D;  4DV1 D;  4NXM D;  4OX9 D;  4OUD A;  4X66 D;  4JI1 D;  1XNQ D;  4DR3 D;  1XMQ D;  4YHH D;  4LFB D;  2UXD D;  4DR1 D;  1KSL A;  4DR6 D;  4KHP D;  4DUZ D;  4LF9 D;  4JI6 D;  4AQY D;  4DV6 D;  4JYA D;  2IST A;  4DR2 D;  4NXN D;  4LF4 D;  1VIO A;  1JH3 A;  4DV4 D;  1HNZ D;  4JI0 D;  1C06 A;  1KSV A;  4DV5 D;  4B3S D;  2UUB D;  1DM9 A;  2ZM6 D;  2UUC D;  4K0K D;  2VQF D;  1J5E D;  1FJG D;  2HHH D;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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4DUYD

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations