4DV2 | Genus

Total Genus 54

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	54
sequence length	208
structure length	208
Chain Sequence	GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQLVIEFYSR

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ribosome
publication title	A structural basis for streptomycin resistance rcsb
molecule keywords	16S rRNA
total genus	54
structure length	208
sequence length	208
ec nomenclature
pdb deposition date	2012-02-22

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
D	PF00163	Ribosomal_S4	Ribosomal protein S4/S9 N-terminal domain
D	PF01479	S4	S4 domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1050.10	Mainly Alpha	Orthogonal Bundle	Ribosomal Protein S4 Delta 41; Chain A, domain 1	Ribosomal Protein S4 Delta 41; Chain A, domain 1	4dv2D01
3.10.290.10	Alpha Beta	Roll	Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A	RNA-binding S4 domain	4dv2D02

2VQED 1VIOA 1I94D 3T1HD 2HHHD 4JI1D 1H3FA 4JI8D 1P9KA 5LMUD 1XNQD 4DR5D 2UXCD 4DR3D 2F4VD 2ISTA 4JI6D 4JI2D 2KTLA 1H3EA 4JI5D 4LFCD 4DV6D 1J5ED 1IBMD 4DV0D 5IWAD 1XNRD 4JI7D 4NXMD 3OTOD 4LF7D 4LFAD 4DUZD 4X64D 1N32D 4DV2D 1IBKD 3T1YD 4DR6D 1KSKA 4LGTA 5LMND 2UU9D 2UUCD 4X66D 4JI3D 4B3SD 2UUAD 1N33D 4GKKD 2K6PA 2E5LD 4DR7D 4DR1D 2VQFD 1N36D 4KHPD 2ZM6D 2JANA 4B3RD 4JV5D 4OX9D 1KSVA 1XMOD 4DV1D 1IBLD 1HNZD 4YY3D 1XMQD 3HP7A 4B3MD 4X65D 1C06A 4GKJD 1DM9A 1C05A 2UXDD 4OUDA 4JI4D 4LF5D 4DV7D 4YHHD 4K0KD 2UXBD 4LF9D 3KBGA 1JH3A 4JI0D 4LF6D 4JYAD 1N34D 1HR0D 1FJGD 1KSLA 4DR4D 2UUBD 4X62D 1HNWD 4B3TD 1HNXD 4DV4D 4AQYD 4LF4D 1FKAD 4DUYD 5BR8D 4LFBD 4DV3D 4DR2D 4NXND 4LF8D 4DV5D 3DH3A
chains in the Genus database with same CATH superfamily

2VQED 1VIOA 1I94D 4II3A 3T1HD 2HHHD 4JI1D 1H3FA 4JI8D 3KYCB 1P9KA 3JAME 5LMUD 1XNQD 4DR5D 2UXCD 4DR3D 2F4VD 2ISTA 4JI6D 4JI2D 2KTLA 1H3EA 4JI5D 4LFCD 2I1SA 4DV6D 1J5ED 1IBMD 4DV0D 2L3NA 4II2A 5IWAD 5A2QE 3FN1A 1XNRD 4JI7D 4NXMD 3OTOD 4LF7D 4LFAD 4DUZD 4X64D 1N32D 4DV2D 1IBKD 3T1YD 4DR6D 1KSKA 4LGTA 1Y8QB 5LMND 2UU9D 2UUCD 5IT9E 4X66D 4JI3D 4B3SD 2UUAD 1N33D 4GKKD 2K6PA 2E5LD 4DR7D 3KYDB 4DR1D 2VQFD 4NNJA 1N36D 3ONHA 4KHPD 2ZM6D 2JANA 4B3RD 4JV5D 4OX9D 1KSVA 2LQ7A 5LL6S 1XMOD 4DV1D 1IBLD 1HNZD 2NVUB 4YY3D 1XMQD 3HP7A 4B3MD 4W5VB 4X65D 1C06A 4GKJD 5FQ2B 1DM9A 1C05A 5FLXE 2UXDD 3ONGA 4OUDA 4JI4D 3J7AF 4LF5D 4DV7D 4YHHD 4K0KD 2UXBD 4LF9D 3KBGA 3J81E 1JH3A 4JI0D 3J80E 4LF6D 4JYAD 1N34D 1HR0D 1FJGD 1KSLA 4DR4D 1Y8RB 2UUBD 4X62D 1HNWD 4B3TD 5KNLA 1HNXD 4DV4D 4AQYD 1Y8XB 4LF4D 1FKAD 4DUYD 5BR8D 4LFBD 4DV3D 4DR2D 4NXND 3CMMA 2ZTBA 4LF8D 4DV5D 3DH3A
chains in the Genus database with same CATH topology

2VQED 1VIOA 1I94D 3T1HD 2HHHD 4JI1D 1H3FA 4JI8D 1P9KA 5LMUD 1XNQD 4DR5D 2UXCD 4DR3D 2F4VD 2ISTA 4JI6D 4JI2D 2KTLA 1H3EA 4JI5D 4LFCD 4DV6D 1J5ED 1IBMD 4DV0D 2L3NA 5IWAD 1XNRD 4JI7D 4NXMD 3OTOD 4LF7D 4LFAD 4DUZD 4X64D 1N32D 4DV2D 1IBKD 3T1YD 4DR6D 1KSKA 4LGTA 5LMND 2UU9D 2UUCD 4X66D 4JI3D 4B3SD 2UUAD 1N33D 4GKKD 2K6PA 2E5LD 4DR7D 4DR1D 2VQFD 1N36D 4KHPD 2ZM6D 2JANA 4B3RD 4JV5D 4OX9D 1KSVA 1XMOD 4DV1D 1IBLD 1HNZD 4YY3D 1XMQD 3HP7A 4B3MD 4X65D 1C06A 4GKJD 1DM9A 1C05A 2UXDD 4OUDA 4JI4D 4LF5D 4DV7D 4YHHD 4K0KD 2UXBD 4LF9D 3KBGA 1JH3A 4JI0D 4LF6D 4JYAD 1N34D 1HR0D 1FJGD 1KSLA 4DR4D 2UUBD 4X62D 1HNWD 4B3TD 1HNXD 4DV4D 4AQYD 4LF4D 1FKAD 4DUYD 5BR8D 4LFBD 4DV3D 4DR2D 4NXND 4LF8D 4DV5D 3DH3A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2VQE D;  1VIO A;  1I94 D;  3T1H D;  2HHH D;  4JI1 D;  1H3F A;  4JI8 D;  1P9K A;  5LMU D;  1XNQ D;  4DR5 D;  2UXC D;  4DR3 D;  2F4V D;  2IST A;  4JI6 D;  4JI2 D;  2KTL A;  1H3E A;  4JI5 D;  4LFC D;  4DV6 D;  1J5E D;  1IBM D;  4DV0 D;  5IWA D;  1XNR D;  4JI7 D;  4NXM D;  3OTO D;  4LF7 D;  4LFA D;  4DUZ D;  4X64 D;  1N32 D;  4DV2 D;  1IBK D;  3T1Y D;  4DR6 D;  1KSK A;  4LGT A;  5LMN D;  2UU9 D;  2UUC D;  4X66 D;  4JI3 D;  4B3S D;  2UUA D;  1N33 D;  4GKK D;  2K6P A;  2E5L D;  4DR7 D;  4DR1 D;  2VQF D;  1N36 D;  4KHP D;  2ZM6 D;  2JAN A;  4B3R D;  4JV5 D;  4OX9 D;  1KSV A;  1XMO D;  4DV1 D;  1IBL D;  1HNZ D;  4YY3 D;  1XMQ D;  3HP7 A;  4B3M D;  4X65 D;  1C06 A;  4GKJ D;  1DM9 A;  1C05 A;  2UXD D;  4OUD A;  4JI4 D;  4LF5 D;  4DV7 D;  4YHH D;  4K0K D;  2UXB D;  4LF9 D;  3KBG A;  1JH3 A;  4JI0 D;  4LF6 D;  4JYA D;  1N34 D;  1HR0 D;  1FJG D;  1KSL A;  4DR4 D;  2UUB D;  4X62 D;  1HNW D;  4B3T D;  1HNX D;  4DV4 D;  4AQY D;  4LF4 D;  1FKA D;  4DUY D;  5BR8 D;  4LFB D;  4DV3 D;  4DR2 D;  4NXN D;  4LF8 D;  4DV5 D;  3DH3 A; 
#chains in the Genus database with same CATH topology
 2VQE D;  1VIO A;  1I94 D;  4II3 A;  3T1H D;  2HHH D;  4JI1 D;  1H3F A;  4JI8 D;  3KYC B;  1P9K A;  3JAM E;  5LMU D;  1XNQ D;  4DR5 D;  2UXC D;  4DR3 D;  2F4V D;  2IST A;  4JI6 D;  4JI2 D;  2KTL A;  1H3E A;  4JI5 D;  4LFC D;  2I1S A;  4DV6 D;  1J5E D;  1IBM D;  4DV0 D;  2L3N A;  4II2 A;  5IWA D;  5A2Q E;  3FN1 A;  1XNR D;  4JI7 D;  4NXM D;  3OTO D;  4LF7 D;  4LFA D;  4DUZ D;  4X64 D;  1N32 D;  4DV2 D;  1IBK D;  3T1Y D;  4DR6 D;  1KSK A;  4LGT A;  1Y8Q B;  5LMN D;  2UU9 D;  2UUC D;  5IT9 E;  4X66 D;  4JI3 D;  4B3S D;  2UUA D;  1N33 D;  4GKK D;  2K6P A;  2E5L D;  4DR7 D;  3KYD B;  4DR1 D;  2VQF D;  4NNJ A;  1N36 D;  3ONH A;  4KHP D;  2ZM6 D;  2JAN A;  4B3R D;  4JV5 D;  4OX9 D;  1KSV A;  2LQ7 A;  5LL6 S;  1XMO D;  4DV1 D;  1IBL D;  1HNZ D;  2NVU B;  4YY3 D;  1XMQ D;  3HP7 A;  4B3M D;  4W5V B;  4X65 D;  1C06 A;  4GKJ D;  5FQ2 B;  1DM9 A;  1C05 A;  5FLX E;  2UXD D;  3ONG A;  4OUD A;  4JI4 D;  3J7A F;  4LF5 D;  4DV7 D;  4YHH D;  4K0K D;  2UXB D;  4LF9 D;  3KBG A;  3J81 E;  1JH3 A;  4JI0 D;  3J80 E;  4LF6 D;  4JYA D;  1N34 D;  1HR0 D;  1FJG D;  1KSL A;  4DR4 D;  1Y8R B;  2UUB D;  4X62 D;  1HNW D;  4B3T D;  5KNL A;  1HNX D;  4DV4 D;  4AQY D;  1Y8X B;  4LF4 D;  1FKA D;  4DUY D;  5BR8 D;  4LFB D;  4DV3 D;  4DR2 D;  4NXN D;  3CMM A;  2ZTB A;  4LF8 D;  4DV5 D;  3DH3 A; 
#chains in the Genus database with same CATH homology
 2VQE D;  1VIO A;  1I94 D;  3T1H D;  2HHH D;  4JI1 D;  1H3F A;  4JI8 D;  1P9K A;  5LMU D;  1XNQ D;  4DR5 D;  2UXC D;  4DR3 D;  2F4V D;  2IST A;  4JI6 D;  4JI2 D;  2KTL A;  1H3E A;  4JI5 D;  4LFC D;  4DV6 D;  1J5E D;  1IBM D;  4DV0 D;  2L3N A;  5IWA D;  1XNR D;  4JI7 D;  4NXM D;  3OTO D;  4LF7 D;  4LFA D;  4DUZ D;  4X64 D;  1N32 D;  4DV2 D;  1IBK D;  3T1Y D;  4DR6 D;  1KSK A;  4LGT A;  5LMN D;  2UU9 D;  2UUC D;  4X66 D;  4JI3 D;  4B3S D;  2UUA D;  1N33 D;  4GKK D;  2K6P A;  2E5L D;  4DR7 D;  4DR1 D;  2VQF D;  1N36 D;  4KHP D;  2ZM6 D;  2JAN A;  4B3R D;  4JV5 D;  4OX9 D;  1KSV A;  1XMO D;  4DV1 D;  1IBL D;  1HNZ D;  4YY3 D;  1XMQ D;  3HP7 A;  4B3M D;  4X65 D;  1C06 A;  4GKJ D;  1DM9 A;  1C05 A;  2UXD D;  4OUD A;  4JI4 D;  4LF5 D;  4DV7 D;  4YHH D;  4K0K D;  2UXB D;  4LF9 D;  3KBG A;  1JH3 A;  4JI0 D;  4LF6 D;  4JYA D;  1N34 D;  1HR0 D;  1FJG D;  1KSL A;  4DR4 D;  2UUB D;  4X62 D;  1HNW D;  4B3T D;  1HNX D;  4DV4 D;  4AQY D;  4LF4 D;  1FKA D;  4DUY D;  5BR8 D;  4LFB D;  4DV3 D;  4DR2 D;  4NXN D;  4LF8 D;  4DV5 D;  3DH3 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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4DV2D

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations