4LF9 | Genus

Total Genus 53

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	53
sequence length	208
structure length	208
Chain Sequence	GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQLVIEFYSR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ribosome
publication title	Crystal Structure of 30S ribosomal subunit from Thermus thermophilus rcsb
molecule keywords	16S rRNA
total genus	53
structure length	208
sequence length	208
ec nomenclature
pdb deposition date	2013-06-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
D	PF00163	Ribosomal_S4	Ribosomal protein S4/S9 N-terminal domain
D	PF01479	S4	S4 domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1050.10	Mainly Alpha	Orthogonal Bundle	Ribosomal Protein S4 Delta 41; Chain A, domain 1	Ribosomal Protein S4 Delta 41; Chain A, domain 1	4lf9D01
3.10.290.10	Alpha Beta	Roll	Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A	RNA-binding S4 domain	4lf9D02

2UUAD 4DUYD 4DV5D 4JI6D 2E5LD 1XNQD 1C06A 4LF9D 4YY3D 2UUCD 4GKJD 4DR2D 4JI2D 4LF7D 1IBKD 4DV2D 1XNRD 1KSVA 4DR1D 3T1HD 4LFBD 4LFAD 1H3FA 4NXND 2ZM6D 4DV7D 2UXDD 4K0KD 3T1YD 2HHHD 2UXBD 1KSKA 1P9KA 2UXCD 4X64D 4DV1D 5LMND 2K6PA 4OX9D 1XMOD 3KBGA 1N32D 4JI0D 1JH3A 2ISTA 4JI1D 4JYAD 1DM9A 3HP7A 2VQED 4JI3D 4KHPD 4AQYD 2UU9D 1N33D 1HR0D 4LF6D 4LF5D 1XMQD 1H3EA 1N34D 4LGTA 4OUDA 4DV0D 1IBMD 4LFCD 5LMUD 4JV5D 5BR8D 4GKKD 3DH3A 4JI4D 4DR7D 1IBLD 4B3SD 4DR5D 4DUZD 1FJGD 4X65D 1N36D 4DR6D 1J5ED 4B3TD 4JI5D 2VQFD 2F4VD 4DV6D 1C05A 1HNXD 4DR4D 4YHHD 4NXMD 4X66D 4JI7D 4DV4D 4B3RD 1KSLA 1HNZD 2UUBD 3OTOD 5IWAD 1HNWD 4X62D 4JI8D 4DV3D 4LF4D 4DR3D 2JANA 1I94D 4B3MD 1FKAD 2KTLA 1VIOA 4LF8D
chains in the Genus database with same CATH superfamily

2L3NA 3FN1A 2UUAD 4DUYD 4DV5D 3ONHA 4JI6D 2NVUB 2E5LD 1XNQD 3J80E 1C06A 4LF9D 4YY3D 2UUCD 4GKJD 4DR2D 4JI2D 4LF7D 1IBKD 5FQ2B 4DV2D 1XNRD 1KSVA 4DR1D 3T1HD 4LFBD 4LFAD 1Y8QB 1H3FA 4NXND 2ZM6D 4DV7D 2UXDD 5IT9E 4K0KD 3T1YD 2HHHD 2UXBD 4II2A 2I1SA 1KSKA 1P9KA 2UXCD 4X64D 4DV1D 5LMND 2K6PA 5LL6S 4OX9D 5FLXE 1XMOD 3KBGA 1N32D 5KNLA 4JI0D 2LQ7A 1JH3A 2ISTA 4JI1D 4JYAD 1DM9A 3HP7A 2VQED 4JI3D 4KHPD 3KYCB 4AQYD 2UU9D 1N33D 1HR0D 2ZTBA 4LF6D 5A2QE 4LF5D 1XMQD 1Y8RB 1H3EA 1N34D 4LGTA 1Y8XB 4OUDA 4DV0D 1IBMD 4LFCD 5LMUD 4JV5D 5BR8D 4GKKD 3DH3A 3J81E 4JI4D 4DR7D 3JAME 1IBLD 3KYDB 3ONGA 4B3SD 4W5VB 4DR5D 4DUZD 1FJGD 4X65D 1N36D 4DR6D 1J5ED 4B3TD 4II3A 4JI5D 2VQFD 2F4VD 4DV6D 1C05A 1HNXD 4DR4D 4YHHD 4NXMD 4NNJA 4X66D 4JI7D 4DV4D 4B3RD 1KSLA 1HNZD 2UUBD 3OTOD 5IWAD 1HNWD 4X62D 4JI8D 4DV3D 3J7AF 3CMMA 4LF4D 4DR3D 2JANA 1I94D 4B3MD 1FKAD 2KTLA 1VIOA 4LF8D
chains in the Genus database with same CATH topology

2L3NA 2UUAD 4DUYD 4DV5D 4JI6D 2E5LD 1XNQD 1C06A 4LF9D 4YY3D 2UUCD 4GKJD 4DR2D 4JI2D 4LF7D 1IBKD 4DV2D 1XNRD 1KSVA 4DR1D 3T1HD 4LFBD 4LFAD 1H3FA 4NXND 2ZM6D 4DV7D 2UXDD 4K0KD 3T1YD 2HHHD 2UXBD 1KSKA 1P9KA 2UXCD 4X64D 4DV1D 5LMND 2K6PA 4OX9D 1XMOD 3KBGA 1N32D 4JI0D 1JH3A 2ISTA 4JI1D 4JYAD 1DM9A 3HP7A 2VQED 4JI3D 4KHPD 4AQYD 2UU9D 1N33D 1HR0D 4LF6D 4LF5D 1XMQD 1H3EA 1N34D 4LGTA 4OUDA 4DV0D 1IBMD 4LFCD 5LMUD 4JV5D 5BR8D 4GKKD 3DH3A 4JI4D 4DR7D 1IBLD 4B3SD 4DR5D 4DUZD 1FJGD 4X65D 1N36D 4DR6D 1J5ED 4B3TD 4JI5D 2VQFD 2F4VD 4DV6D 1C05A 1HNXD 4DR4D 4YHHD 4NXMD 4X66D 4JI7D 4DV4D 4B3RD 1KSLA 1HNZD 2UUBD 3OTOD 5IWAD 1HNWD 4X62D 4JI8D 4DV3D 4LF4D 4DR3D 2JANA 1I94D 4B3MD 1FKAD 2KTLA 1VIOA 4LF8D
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2UUA D;  4DUY D;  4DV5 D;  4JI6 D;  2E5L D;  1XNQ D;  1C06 A;  4LF9 D;  4YY3 D;  2UUC D;  4GKJ D;  4DR2 D;  4JI2 D;  4LF7 D;  1IBK D;  4DV2 D;  1XNR D;  1KSV A;  4DR1 D;  3T1H D;  4LFB D;  4LFA D;  1H3F A;  4NXN D;  2ZM6 D;  4DV7 D;  2UXD D;  4K0K D;  3T1Y D;  2HHH D;  2UXB D;  1KSK A;  1P9K A;  2UXC D;  4X64 D;  4DV1 D;  5LMN D;  2K6P A;  4OX9 D;  1XMO D;  3KBG A;  1N32 D;  4JI0 D;  1JH3 A;  2IST A;  4JI1 D;  4JYA D;  1DM9 A;  3HP7 A;  2VQE D;  4JI3 D;  4KHP D;  4AQY D;  2UU9 D;  1N33 D;  1HR0 D;  4LF6 D;  4LF5 D;  1XMQ D;  1H3E A;  1N34 D;  4LGT A;  4OUD A;  4DV0 D;  1IBM D;  4LFC D;  5LMU D;  4JV5 D;  5BR8 D;  4GKK D;  3DH3 A;  4JI4 D;  4DR7 D;  1IBL D;  4B3S D;  4DR5 D;  4DUZ D;  1FJG D;  4X65 D;  1N36 D;  4DR6 D;  1J5E D;  4B3T D;  4JI5 D;  2VQF D;  2F4V D;  4DV6 D;  1C05 A;  1HNX D;  4DR4 D;  4YHH D;  4NXM D;  4X66 D;  4JI7 D;  4DV4 D;  4B3R D;  1KSL A;  1HNZ D;  2UUB D;  3OTO D;  5IWA D;  1HNW D;  4X62 D;  4JI8 D;  4DV3 D;  4LF4 D;  4DR3 D;  2JAN A;  1I94 D;  4B3M D;  1FKA D;  2KTL A;  1VIO A;  4LF8 D; 
#chains in the Genus database with same CATH topology
 2L3N A;  3FN1 A;  2UUA D;  4DUY D;  4DV5 D;  3ONH A;  4JI6 D;  2NVU B;  2E5L D;  1XNQ D;  3J80 E;  1C06 A;  4LF9 D;  4YY3 D;  2UUC D;  4GKJ D;  4DR2 D;  4JI2 D;  4LF7 D;  1IBK D;  5FQ2 B;  4DV2 D;  1XNR D;  1KSV A;  4DR1 D;  3T1H D;  4LFB D;  4LFA D;  1Y8Q B;  1H3F A;  4NXN D;  2ZM6 D;  4DV7 D;  2UXD D;  5IT9 E;  4K0K D;  3T1Y D;  2HHH D;  2UXB D;  4II2 A;  2I1S A;  1KSK A;  1P9K A;  2UXC D;  4X64 D;  4DV1 D;  5LMN D;  2K6P A;  5LL6 S;  4OX9 D;  5FLX E;  1XMO D;  3KBG A;  1N32 D;  5KNL A;  4JI0 D;  2LQ7 A;  1JH3 A;  2IST A;  4JI1 D;  4JYA D;  1DM9 A;  3HP7 A;  2VQE D;  4JI3 D;  4KHP D;  3KYC B;  4AQY D;  2UU9 D;  1N33 D;  1HR0 D;  2ZTB A;  4LF6 D;  5A2Q E;  4LF5 D;  1XMQ D;  1Y8R B;  1H3E A;  1N34 D;  4LGT A;  1Y8X B;  4OUD A;  4DV0 D;  1IBM D;  4LFC D;  5LMU D;  4JV5 D;  5BR8 D;  4GKK D;  3DH3 A;  3J81 E;  4JI4 D;  4DR7 D;  3JAM E;  1IBL D;  3KYD B;  3ONG A;  4B3S D;  4W5V B;  4DR5 D;  4DUZ D;  1FJG D;  4X65 D;  1N36 D;  4DR6 D;  1J5E D;  4B3T D;  4II3 A;  4JI5 D;  2VQF D;  2F4V D;  4DV6 D;  1C05 A;  1HNX D;  4DR4 D;  4YHH D;  4NXM D;  4NNJ A;  4X66 D;  4JI7 D;  4DV4 D;  4B3R D;  1KSL A;  1HNZ D;  2UUB D;  3OTO D;  5IWA D;  1HNW D;  4X62 D;  4JI8 D;  4DV3 D;  3J7A F;  3CMM A;  4LF4 D;  4DR3 D;  2JAN A;  1I94 D;  4B3M D;  1FKA D;  2KTL A;  1VIO A;  4LF8 D; 
#chains in the Genus database with same CATH homology
 2L3N A;  2UUA D;  4DUY D;  4DV5 D;  4JI6 D;  2E5L D;  1XNQ D;  1C06 A;  4LF9 D;  4YY3 D;  2UUC D;  4GKJ D;  4DR2 D;  4JI2 D;  4LF7 D;  1IBK D;  4DV2 D;  1XNR D;  1KSV A;  4DR1 D;  3T1H D;  4LFB D;  4LFA D;  1H3F A;  4NXN D;  2ZM6 D;  4DV7 D;  2UXD D;  4K0K D;  3T1Y D;  2HHH D;  2UXB D;  1KSK A;  1P9K A;  2UXC D;  4X64 D;  4DV1 D;  5LMN D;  2K6P A;  4OX9 D;  1XMO D;  3KBG A;  1N32 D;  4JI0 D;  1JH3 A;  2IST A;  4JI1 D;  4JYA D;  1DM9 A;  3HP7 A;  2VQE D;  4JI3 D;  4KHP D;  4AQY D;  2UU9 D;  1N33 D;  1HR0 D;  4LF6 D;  4LF5 D;  1XMQ D;  1H3E A;  1N34 D;  4LGT A;  4OUD A;  4DV0 D;  1IBM D;  4LFC D;  5LMU D;  4JV5 D;  5BR8 D;  4GKK D;  3DH3 A;  4JI4 D;  4DR7 D;  1IBL D;  4B3S D;  4DR5 D;  4DUZ D;  1FJG D;  4X65 D;  1N36 D;  4DR6 D;  1J5E D;  4B3T D;  4JI5 D;  2VQF D;  2F4V D;  4DV6 D;  1C05 A;  1HNX D;  4DR4 D;  4YHH D;  4NXM D;  4X66 D;  4JI7 D;  4DV4 D;  4B3R D;  1KSL A;  1HNZ D;  2UUB D;  3OTO D;  5IWA D;  1HNW D;  4X62 D;  4JI8 D;  4DV3 D;  4LF4 D;  4DR3 D;  2JAN A;  1I94 D;  4B3M D;  1FKA D;  2KTL A;  1VIO A;  4LF8 D;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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4LF9D

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations